View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_low_26 (Length: 415)
Name: NF20783_low_26
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 29 - 389
Target Start/End: Original strand, 40577901 - 40578261
Alignment:
| Q |
29 |
gtaattcaattccgattcaaacaaaaatcgttcctgcagaattgtatgagattttcgaaccactttgtgaagaaataaatttcagattcatcttcacatt |
128 |
Q |
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| T |
40577901 |
gtaattcaattccgattcaaacaataatcgttcctgcagaattgtatgagattttcgaaccactttgtgaagaaataaatttcagattcatctttacatt |
40578000 |
T |
|
| Q |
129 |
ttcgtgcaatttggtccctgaaagtttctgtttgaaatttctgcatccctgttgttatttatttatttgcttttgtttctttcatccttatttattcatt |
228 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40578001 |
ttcgtgcaatttggtccctgaaagtttctgtttgcaatttctgcatctctgttcttatttatttatttgcttttgtttctttcattcttatttattcatc |
40578100 |
T |
|
| Q |
229 |
caatttccattgagtctctttactattattcatcgttgtttgattgctagctactttaatccatattattcatgtgctattgctggtgctgtaagacaca |
328 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| | |
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| T |
40578101 |
caatttccattgagtctctttactattattcatagttgtttgattgctagctactttaatccctattattcatgtgctattgctggtgccgtaagacata |
40578200 |
T |
|
| Q |
329 |
ttgcttttgatcccttagctttttgatttagttttcattgtcgtgtcaattcattgccttt |
389 |
Q |
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||||||||||| || ||||||||||||||||| ||||||| ||||| |||||||||||||| |
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| T |
40578201 |
ttgcttttgattccatagctttttgatttagtgttcattgccgtgtaaattcattgccttt |
40578261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 23 - 389
Target Start/End: Complemental strand, 19805165 - 19804799
Alignment:
| Q |
23 |
ctcactgtaattcaattccgattcaaacaaaaatcgttcctgcagaattgtatgagattttcgaaccactttgtgaagaaataaatttcagattcatctt |
122 |
Q |
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| T |
19805165 |
ctcactgtaattcaattccgattcaaacaaaaatcgttcctgcagaattgtatgagattttcgaaccactttgtgaagaaataaatttcagattcatctt |
19805066 |
T |
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| Q |
123 |
cacattttcgtgcaatttggtccctgaaagtttctgtttgaaatttctgcatccctgttgttatttatttatttgcttttgtttctttcatccttattta |
222 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||| |
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| T |
19805065 |
tacattttcgtgcaattcggtccctgaaagtttctgtttgcaatttctgcatccctgttcttatttatttatttgcctttgtttctttcattcttattta |
19804966 |
T |
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| Q |
223 |
ttcattcaatttccattgagtctctttactattattcatcgttgtttgattgctagctactttaatccatattattcatgtgctattgctggtgctgtaa |
322 |
Q |
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||||| |||||| |||||||||||||||||||||||| | ||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
19804965 |
ttcatccaatttacattgagtctctttactattattcttagttgttttattgctagctactttaatccctattattcatgtgctattgctggtgccgtaa |
19804866 |
T |
|
| Q |
323 |
gacacattgcttttgatcccttagctttttgatttagttttcattgtcgtgtcaattcattgccttt |
389 |
Q |
| |
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|||| |||||||||||| |||||||||||||||||||| ||||||| ||||| |||||||||||||| |
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| T |
19804865 |
gacatattgcttttgattccttagctttttgatttagtgttcattgccgtgtaaattcattgccttt |
19804799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 23 - 389
Target Start/End: Complemental strand, 27775639 - 27775273
Alignment:
| Q |
23 |
ctcactgtaattcaattccgattcaaacaaaaatcgttcctgcagaattgtatgagattttcgaaccactttgtgaagaaataaatttcagattcatctt |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27775639 |
ctcactgtaattcaattccgattcaaacaaaaatcgttcctgcagaattgtatgagattttcgaaccactttgtgaagaaataaatttcagattcatctt |
27775540 |
T |
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| Q |
123 |
cacattttcgtgcaatttggtccctgaaagtttctgtttgaaatttctgcatccctgttgttatttatttatttgcttttgtttctttcatccttattta |
222 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||| |
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| T |
27775539 |
tacattttcgtgcaattcggtccctgaaagtttctgtttgcaatttctgcatccctgttcttatttatttatttgcctttgtttctttcattcttattta |
27775440 |
T |
|
| Q |
223 |
ttcattcaatttccattgagtctctttactattattcatcgttgtttgattgctagctactttaatccatattattcatgtgctattgctggtgctgtaa |
322 |
Q |
| |
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||||| |||||| |||||||||||||||||||||||| | ||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
27775439 |
ttcatccaatttacattgagtctctttactattattcttagttgttttattgctagctactttaatccctattattcatgtgctattgctggtgccgtaa |
27775340 |
T |
|
| Q |
323 |
gacacattgcttttgatcccttagctttttgatttagttttcattgtcgtgtcaattcattgccttt |
389 |
Q |
| |
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|||| |||||||||||| |||||||||||||||||||| ||||||| ||||| |||||||||||||| |
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| T |
27775339 |
gacatattgcttttgattccttagctttttgatttagtgttcattgccgtgtaaattcattgccttt |
27775273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 236 - 326
Target Start/End: Complemental strand, 32879422 - 32879332
Alignment:
| Q |
236 |
cattgagtctctttactattattcatcgttgtttgattgctagctactttaatccatattattcatgtgctattgctggtgctgtaagaca |
326 |
Q |
| |
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|||| ||| |||||||| |||||||| |||||||||||||||||||||||||||| | ||||||||||| |||||||||||| ||||||| |
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| T |
32879422 |
cattaagtttctttactgttattcattgttgtttgattgctagctactttaatccttgttattcatgtgttattgctggtgccataagaca |
32879332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 389
Target Start/End: Complemental strand, 19312563 - 19312466
Alignment:
| Q |
294 |
ttattcatgtgctattgctggtgctgtaagacacattgcttttgatcccttagcttttt---gatttagttttcattgtcgtgtcaattcattgccttt |
389 |
Q |
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||||||||| | | |||||||||| |||||||| ||||||||| |||| || ||||| | |||||||||||| ||| |||||||||||||||||||| |
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| T |
19312563 |
ttattcatgagttgttgctggtgccgtaagacatattgcttttaatcc-ttggctttataatgatttagttttcgttgccgtgtcaattcattgccttt |
19312466 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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