View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20783_low_30 (Length: 404)
Name: NF20783_low_30
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_low_30 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 156; Significance: 9e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 31753397 - 31753595
Alignment:
| Q |
1 |
cttccatctatgtctcttgatcagtccttttagctaagcacatattttacttnnnnnnnn--tatatattttcatgttgagtttttcaacatagaaatat |
98 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31753397 |
cttccatctatgtctcttgatcaatccttttagctaagcacatattttacttaaaaaaaaaatatatattttcatgttgagtttttcaacatggaaatat |
31753496 |
T |
|
| Q |
99 |
attttgtaaatgaattcattgttgaatatacataagagatcaatagaagtaactcatatacttgaatcataatgattcaaagtcttaagtgaaaatata |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31753497 |
attttgtaaatgaattcattgttgaatatacataagagatcaatagaagtaactcatatacttgaatcataatgattcaaagtcttaagtgaaaatata |
31753595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 220 - 397
Target Start/End: Original strand, 31753591 - 31753767
Alignment:
| Q |
220 |
atatatcattgattcgtagttgctcctgactcgcaacgcatgtccattaaactctattatgatggattacaaacgagctatggtcacttaaatggtgggt |
319 |
Q |
| |
|
||||| ||||| |||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31753591 |
atataccattggttcgtagttgcttct-actcgcaatgcatgtccattaaactctattatgatggattacaaacgagctatggtcacttaaatggtgggt |
31753689 |
T |
|
| Q |
320 |
gggtccagcaagtgcacggggggtgaagtgggtggttctttctatctctgcaagaacatatatgctctacctatgcta |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31753690 |
gggtccagcaagtgcacggggggtgaagtgggtggttctttctatctctgcaagaacatatatgctctacctatgcta |
31753767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University