View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_low_31 (Length: 399)
Name: NF20783_low_31
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 43 - 386
Target Start/End: Complemental strand, 24997956 - 24997613
Alignment:
| Q |
43 |
gaaccaggagactcaagcatgagaacaaatgtcactcacgtagtggaaattggcatgaaagagcgaggaagtagtataagcaagcttgacggtggaaaca |
142 |
Q |
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| T |
24997956 |
gaaccaggagactcaagcatgagaacaaatgtcactcatgtagtggaaattggcatgaaagagcgaagtagtagtataagcaagcttgacagtggaaaca |
24997857 |
T |
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| Q |
143 |
atatggaaacaaagccacattgaaaatgtaaatcttcnnnnnnnnnnntagagggnnnnnnntgcaaatctttataattt-caatggtattggaaagtat |
241 |
Q |
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| T |
24997856 |
atatggaaacaaagccacgttgaaaatgcaaatcttcaaaaaaaaaaatagagggaaaaaaatgcaaatctttagagttttcaatggtattggaaagtat |
24997757 |
T |
|
| Q |
242 |
tagatnnnnnnnnnggtaactttgaaaatgtttttcattttgatatatccttgatctctctttcctcttcatgtttttaattaattgatgttctttgttt |
341 |
Q |
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| T |
24997756 |
tagatacaaaaaaaggtaactttgaaaatgtttttcatttagatatatccttgatctctctttcctcttcatgtttttaattaattgatgttc-ttgttt |
24997658 |
T |
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| Q |
342 |
ggttctggtcattgatgttaatttatagcttattatagcttagta |
386 |
Q |
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| T |
24997657 |
ggttctggtcattgatgttaatttatagcttattatagcttagta |
24997613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 286 - 373
Target Start/End: Original strand, 24999807 - 24999894
Alignment:
| Q |
286 |
atatccttgatctctctttcctcttcatgtttttaattaattgatgttctttgtttggttctggtcattgatgttaatttatagctta |
373 |
Q |
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| T |
24999807 |
atatcgttggtctctccttcctcttcacgtttttaaataattgatgttctttgtttggttctgatcattgatgttagtttagagctta |
24999894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 98
Target Start/End: Original strand, 24998294 - 24998358
Alignment:
| Q |
35 |
acatacatgaaccag-gagactcaagcatgagaacaaatgtcactcacgtagtggaaattggcat |
98 |
Q |
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| T |
24998294 |
acatacatgaaccggcgagactcaagcatgaaaacaaatgacgctcacgcaatggaaattggcat |
24998358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 133 - 176
Target Start/End: Original strand, 24999649 - 24999692
Alignment:
| Q |
133 |
ggtggaaacaatatggaaacaaagccacattgaaaatgtaaatc |
176 |
Q |
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| T |
24999649 |
ggtgcaaacaatatggaaataaagccacattgaaaatgcaaatc |
24999692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 359
Target Start/End: Original strand, 27366977 - 27367069
Alignment:
| Q |
267 |
aaatgtttttcattttgatatatccttgatctctctttcctcttcatgtttttaattaattgatgttctttgtttggttctggtcattgatgt |
359 |
Q |
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| T |
27366977 |
aaatgttatttattttggtatatccttggtctctctttcctctttatgctatcaattagttcatgtaatttttttggttcaattcattgatgt |
27367069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 359
Target Start/End: Original strand, 27457324 - 27457416
Alignment:
| Q |
267 |
aaatgtttttcattttgatatatccttgatctctctttcctcttcatgtttttaattaattgatgttctttgtttggttctggtcattgatgt |
359 |
Q |
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| T |
27457324 |
aaatgttatttattttggtatatccttggtctctctttcctctttatgctatcaattagttcatgtaatttttttggttcaattcattgatgt |
27457416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 256 - 386
Target Start/End: Complemental strand, 19218334 - 19218204
Alignment:
| Q |
256 |
ggtaactttgaaaatgtttttcattttgatatatccttgatctctctttcctcttcatgtttttaattaattgatgttctttgtttggttctggtcattg |
355 |
Q |
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| T |
19218334 |
ggtaactttgaacatgtttctcaatccggtataacgttggtttctatttcctcttcatgtttttaattaattgatgttctttgtttggttctattcattg |
19218235 |
T |
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| Q |
356 |
atgttaatttatagcttattatagcttagta |
386 |
Q |
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| T |
19218234 |
atgttaatttatagcttattaaagcttagta |
19218204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 310
Target Start/End: Complemental strand, 45074068 - 45074020
Alignment:
| Q |
262 |
tttgaaaatgtttttcattttgatatatccttgatctctctttcctctt |
310 |
Q |
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| T |
45074068 |
tttggaaatgttattcattttggtatatccttggtctctctttcctctt |
45074020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 302
Target Start/End: Original strand, 22631741 - 22631781
Alignment:
| Q |
262 |
tttgaaaatgtttttcattttgatatatccttgatctctct |
302 |
Q |
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| T |
22631741 |
tttgaaaatgttattcatttcgatatatcctttatctctct |
22631781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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