View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20783_low_34 (Length: 393)
Name: NF20783_low_34
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_low_34 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 386
Target Start/End: Original strand, 5937665 - 5938046
Alignment:
| Q |
18 |
gttacacaaaagaagagctnnnnnnngctctaaaatatttaggttcttactatcctggatggagggccaatcgttgtttggttaaagctgatttcaacaa |
117 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5937665 |
gttacacaaaagaagagctaaaaaaagctctaaaagatttaggttcttactatcctggatggagggccaatcgttgtttggttaaagctgatttcaacaa |
5937764 |
T |
|
| Q |
118 |
agatggagaaatcagtggtgaggaaattgatactttaattgattatctccttacccgtggttttggaaagaattatatgtagtttgtgtttatgttgatt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5937765 |
agatggagaaatcagtggtgaggaaattgatactttaattgattatctccttacccgtggttttggaaagaattatatgtagtttgtgtttatgttgatt |
5937864 |
T |
|
| Q |
218 |
aattaatgtta-gactatgcttat----atacatgtaacgcagatgaaccggatgtatctaattaattcttcctgtgttgtgatatgcatgca------- |
305 |
Q |
| |
|
||||||| ||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5937865 |
aattaattttaggactatgcttatatacatacatgtaacgcagatgaaccggatgaatctaattaattcttcctgtgttgtgatatgcatgcatacttac |
5937964 |
T |
|
| Q |
306 |
-gctcataaaaataaaatagctaattatgtataatatgcatgaattttatcttatagtttcaatccaacttgtctatgaaag |
386 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5937965 |
tgctcttaaaaataaaatagctaattatgtataatatgcatgaattttatcttatagtttcaatccaacttgtctatgaaag |
5938046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 44 - 189
Target Start/End: Original strand, 5948882 - 5949027
Alignment:
| Q |
44 |
gctctaaaatatttaggttcttactatcctggatggagggccaatcgttgtttggttaaagctgatttcaacaaagatggagaaatcagtggtgaggaaa |
143 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||| ||||||||||||||| | ||||||||| ||| ||||| ||| ||||||||| ||||||| |
|
|
| T |
5948882 |
gctctaaaggatttaggttcttactaccctggatggagagccaatcgttgtttgatgaaagctgatgccaataaagacggactaatcagtggcgaggaaa |
5948981 |
T |
|
| Q |
144 |
ttgatactttaattgattatctccttacccgtggttttggaaagaa |
189 |
Q |
| |
|
| || |||||| ||||||||||||| || ||||||||||| ||||| |
|
|
| T |
5948982 |
tcgacactttagttgattatctcctcactcgtggttttggcaagaa |
5949027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 5954503 - 5954674
Alignment:
| Q |
18 |
gttacacaaaagaagagctnnnnnnngctctaaaatatttaggttcttactatcctggatggagggccaatcgttgtttggttaaagctgatttcaacaa |
117 |
Q |
| |
|
|||||||||| |||||||| |||||||| |||||||||||||||| ||||||| ||| |||| |||||| | ||||||||| |||||| |
|
|
| T |
5954503 |
gttacacaaaggaagagctcaaaaaagctctaaaggatttaggttcttactaccctggattgagagccatattttgtttcatgaaagctgatgccaacaa |
5954602 |
T |
|
| Q |
118 |
agatggagaaatcagtggtgaggaaattgatactttaattgattatctccttacccgtggttttggaaagaa |
189 |
Q |
| |
|
||| ||| |||||||||| |||||||| || ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5954603 |
agacggacaaatcagtggcgaggaaatcgacactttaattgattatctccttacccgtggttttggcaagaa |
5954674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 70 - 165
Target Start/End: Original strand, 5960799 - 5960894
Alignment:
| Q |
70 |
tcctggatggagggccaatcgttgtttggttaaagctgatttcaacaaagatggagaaatcagtggtgaggaaattgatactttaattgattatct |
165 |
Q |
| |
|
|||||||||||| |||| |||||| |||| || | |||| |||||| |||||| |||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
5960799 |
tcctggatggagagccatgcgttgtatggtcaatgttgatgccaacaatgatggacaaattagtggtgaggaaattgatactttagttgattatct |
5960894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University