View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_low_37 (Length: 372)
Name: NF20783_low_37
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 11 - 352
Target Start/End: Complemental strand, 52118560 - 52118222
Alignment:
| Q |
11 |
agcagaacctgtgacatgtactatacgattataaatgcattgcaagttcatgtggaaacagcatcacattatagcttaagccaaggaccacaacaccagc |
110 |
Q |
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| T |
52118560 |
agcacaacctgtgacatgtactatacgattataaatgcattgcaagttcatgtggaaacagcatcacattatagcttaagccaaggaccacaacaccagc |
52118461 |
T |
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| Q |
111 |
taattatgcatgcataattaacatacatgtatatgtgtatggttcctttggtattttgtacatcaaagacaggtccacacttaaacaacttgacatacgc |
210 |
Q |
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| T |
52118460 |
taattatgcatgcat---taacatacatgtatatgtgtatggttcctttggtattttgtacatcaaagacaggtccacacttaaacaacttgacatacgc |
52118364 |
T |
|
| Q |
211 |
atgctctacgaatttatatataataattattagtttggaatgtggaaattattgaaataataatggatcaagtatgcaagaattccatgcaattcgaatt |
310 |
Q |
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| T |
52118363 |
atgctctacgaatttatatataataattattagtttggaatgtggaaattattgaaataataatggatcaagtatgcaagaattccatgcaattcgaatt |
52118264 |
T |
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| Q |
311 |
tagccataaataattaacttgataattggttggtacgtacag |
352 |
Q |
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| T |
52118263 |
tagccataaataattaacttgataattggttggtacgtacag |
52118222 |
T |
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