View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_low_38 (Length: 371)
Name: NF20783_low_38
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_low_38 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 41249722 - 41249364
Alignment:
| Q |
1 |
catattgacatgttttactgagtaatagaccgtccattatttcatcaaaagatagagaacagagcaaatttacagtgtataggtacatatatacaagaaa |
100 |
Q |
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| T |
41249722 |
catattgacatgttttactgagtaatagaccgtccattatttcatcaaaagatagagaacagagcaaatttacagtgta--ggtacatatatacaagaaa |
41249625 |
T |
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| Q |
101 |
aggaatacaaccacgttgcaagtaccaattatatccaagcaagatatccatgtaatgtactgattagcaaccacgttgtgaacagaggttggggagcatc |
200 |
Q |
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| T |
41249624 |
aggaatacaaccacgttgcaagtaccaattatatccaagcaagatatccatgtaatgtactgattagaaaccacgttgtgaacagaggttggggagcatc |
41249525 |
T |
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| Q |
201 |
tattctgtatatttttacatcacgatcagaaatatgagaggaccagcaaaacgagtctgccttagagtttatagtgatatatttaatttggtctaacaat |
300 |
Q |
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| T |
41249524 |
tattctgtatatttttacatcacgatcagaaatatgagaggaccagcaaaacgagtctgccttagagtttatagtgatat-----atttggtctaacaat |
41249430 |
T |
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| Q |
301 |
aacaagtttgtttgtgttcctgtatcatttcatttctgagtaagagtttcacgttggatacaatagtggat |
371 |
Q |
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| T |
41249429 |
aacaagtttgtttgtgttcctgta-----tcatttctgagtaagagtttcacattggatacaaaagtggat |
41249364 |
T |
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