View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_low_43 (Length: 342)
Name: NF20783_low_43
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 332
Target Start/End: Complemental strand, 5649655 - 5649341
Alignment:
| Q |
18 |
aatgaacacaccactttttatggaatttccaactatctacacagaaagcttgacagcaaaacttagttcaacttttactatacacgcagcagcaattcct |
117 |
Q |
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| T |
5649655 |
aatgaacacaccactttttatggaatttccaactatctacacagaaagcttgacagcaaaacttagttcaacttttactatacacgcagcagcaattcct |
5649556 |
T |
|
| Q |
118 |
ttgagactgcaccaacatcaattctagacagtaaccattccagttgcatcaaagagacacactatgcctatattataagaaattatatctttaattacaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5649555 |
ttgagactgcaccaacatcaattctagacagtaaccattccagttgcatcaaagagacacactatgcctatattataagaaattatatctttaattacaa |
5649456 |
T |
|
| Q |
218 |
accacctactcaaaacttgccaagtataaacatgctatgtataaacgctcgtcgctaatcctgacagccaatatcccttcatggtaagttctgatttcaa |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5649455 |
accacctactcaaaacttgccaagtataaacatgctatgtatacacgctcgtcgctaatcctgacagccaatatcccttcatggtaacttctgatttcaa |
5649356 |
T |
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| Q |
318 |
gccaccctgttcatc |
332 |
Q |
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||||||||||||||| |
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| T |
5649355 |
gccaccctgttcatc |
5649341 |
T |
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