View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_low_44 (Length: 341)
Name: NF20783_low_44
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 12 - 260
Target Start/End: Original strand, 30730473 - 30730721
Alignment:
| Q |
12 |
atcatcagaggttgcttctaaatgttgataacagtgctatcaagcaaagaatcgcagccctagcccaagacaaaatcttcaaagatggtatgctacaccc |
111 |
Q |
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| T |
30730473 |
atcatcagaggttgcttctaaatgttgataacagtgctatcaagcaaagaatcgcagccctagcccaagacaaaatcttcaaagatggtatgctacatcc |
30730572 |
T |
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| Q |
112 |
taaatatattctcatttcaccttttacactgtcatgtagtataagtcttctgattcattaattaatgactgtttagattttgttgtatatatatggtcat |
211 |
Q |
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| T |
30730573 |
taaatatattctcatttcaccttttacactgtcatgtagtataagttttctgattcattaattaatcactgtttagattttggtgtatatatatggtcat |
30730672 |
T |
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| Q |
212 |
tgatacgtagttttatactttcagtatgtcatgttcaagagaaagttta |
260 |
Q |
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| T |
30730673 |
tgatacgtagttttatactttcagtatgtcatgttcaagagaaagttta |
30730721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 327
Target Start/End: Original strand, 30730716 - 30730753
Alignment:
| Q |
290 |
agtttatagagatgtacttttcaattgtacaactaatt |
327 |
Q |
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| T |
30730716 |
agtttatagagatgtacttttcaattgtaccactaatt |
30730753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 39028960 - 39029038
Alignment:
| Q |
23 |
ttgcttctaaatgttgataacagtgctatcaagcaaagaatcgcagccctagcccaagacaaaatcttcaaagatggta |
101 |
Q |
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| T |
39028960 |
ttgcttctaaatgttgataacagtgctctcaagcaaagaattgcagcccttgcacaagacaagctattcaaagatggta |
39029038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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