View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_low_45 (Length: 338)
Name: NF20783_low_45
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 11 - 320
Target Start/End: Original strand, 23178206 - 23178516
Alignment:
| Q |
11 |
cacagaaggatatgtaaccattcattccaccactgcatgtatc-ataaataacatgagaaaatagtcgagcaagatcttcattttgtcattataaataga |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23178206 |
cacagaaggatatgtaaccattcattccaccactgcatgtatccataaataacatgagaaaatagtcgagcaagatcttcattttgtcattataaataga |
23178305 |
T |
|
| Q |
110 |
atatatgatgtatacttggacgataaaaaacatgccattctgcttgtccagagtttggaaaaataaacacccaccgtcaaaggtttcaaaactattggtt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23178306 |
atatatgatgtatacttggacgataaaaaacatgccattctgcttgtccagagtttggaaaaataaacacccaccgtcaaaggtttcaaaactattggtt |
23178405 |
T |
|
| Q |
210 |
ttttacttcccaattaacacaatcctcatcaaaagattgcaacaaagcatgtgcttaccaaataacgacggatgtctaactattaaatgctcgacagcaa |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
23178406 |
ttttacttcccaattaacacaatcctcatcaaaagattgcaacaaagcatgtgcttaccaaataatgacggatgtctaactattaaatgctcgacagcaa |
23178505 |
T |
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| Q |
310 |
agtactaattc |
320 |
Q |
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||||||||||| |
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| T |
23178506 |
agtactaattc |
23178516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 23891053 - 23891165
Alignment:
| Q |
11 |
cacagaaggatatgtaaccattcattccaccactgcatgtatc-ataaataacatgagaaaatagtcgagcaagatcttcattttgtcattataaataga |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
23891053 |
cacagaaggatatgtaaccattcattccaccactgcatgtatccataaatatcatcagaaaatagtcgagcaagatcttaattttgtcattataaatagg |
23891152 |
T |
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| Q |
110 |
atatatgatgtat |
122 |
Q |
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||||||||||||| |
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| T |
23891153 |
atatatgatgtat |
23891165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 7868805 - 7868716
Alignment:
| Q |
16 |
aaggatatgtaaccattcattccaccactgcatgtat-cataaataacatgagaaaatagtcgagcaagatcttcattttgtcattataa |
104 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||||||||| ||||| || |||||||||||||| | |||| |||||||| |
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| T |
7868805 |
aaggatatgtaaccattcattccaccactgcatgtatccctaaataacatcagaaagtaatcgagcaagatcttaaatttgccattataa |
7868716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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