View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20783_low_47 (Length: 333)

Name: NF20783_low_47
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20783_low_47
NF20783_low_47
[»] chr3 (17 HSPs)
chr3 (13-321)||(30914585-30914893)
chr3 (13-295)||(19812248-19812527)
chr3 (13-246)||(20016069-20016302)
chr3 (13-255)||(20036471-20036713)
chr3 (13-251)||(20046135-20046370)
chr3 (13-276)||(19956071-19956334)
chr3 (13-255)||(19848998-19849240)
chr3 (118-252)||(26647015-26647146)
chr3 (13-255)||(26653160-26653399)
chr3 (13-254)||(19818566-19818804)
chr3 (13-255)||(19951132-19951371)
chr3 (178-255)||(24840007-24840084)
chr3 (44-253)||(19853522-19853731)
chr3 (184-255)||(19858080-19858151)
chr3 (191-255)||(19943728-19943792)
chr3 (186-253)||(19989532-19989599)
chr3 (184-276)||(19838380-19838472)
[»] chr1 (1 HSPs)
chr1 (13-247)||(1717230-1717461)
[»] chr5 (2 HSPs)
chr5 (32-253)||(9815047-9815265)
chr5 (121-253)||(26354903-26355035)
[»] chr8 (3 HSPs)
chr8 (184-255)||(22652127-22652198)
chr8 (118-243)||(22685656-22685778)
chr8 (54-253)||(22689564-22689763)
[»] chr7 (6 HSPs)
chr7 (123-231)||(12581424-12581529)
chr7 (123-231)||(12497241-12497346)
chr7 (123-231)||(12521106-12521211)
chr7 (178-231)||(12519825-12519878)
chr7 (178-231)||(12580114-12580167)
chr7 (20-92)||(12581560-12581632)
[»] chr4 (2 HSPs)
chr4 (156-251)||(6397749-6397844)
chr4 (142-244)||(6398280-6398382)


Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 321
Target Start/End: Complemental strand, 30914893 - 30914585
Alignment:
Q  13 ctatcaccaccaacttgatattttgataaaccaactattgttttcttaaataaacttagatctttatatatgctagccaannnnnnnggtgctaatgcaa 112  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||| ||||||||||||||       |||||||||||||    
T  30914893 ctatcaccaccaacttgatattttgacaaaccaactattgttttcttaaacaaacttaaatctttgtatatgctagccaatttttttggtgctaatgcaa 30914794  T
Q  113 caatgttccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaag 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30914793 caatgttccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaag 30914694  T
Q  213 gaatgcttcatgttcaatttcactaactttatcaatgaaaatactcatctctattgatgttctaaccttaccttgtttactcttataaagttcttgtctt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30914693 gaatgcttcatgttcaatttcactaactttatcaatgaaaatactcatctctattgatgttctaaccttaccttgtttactcttataaagttcttgtctt 30914594  T
Q  313 gcgatgatg 321  Q
    |||||||||    
T  30914593 gcgatgatg 30914585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 13 - 295
Target Start/End: Complemental strand, 19812527 - 19812248
Alignment:
Q  13 ctatcaccaccaacttgatattttgataaaccaactattgttttcttaaataaacttagatctttatatatgctagccaannnnnnnggtgctaatgcaa 112  Q
    ||||||||||||||  |||||||||| ||| |||| |||||||||||||| ||||||| |||||||||||||||||||||       ||||| || ||||    
T  19812527 ctatcaccaccaacaggatattttgacaaatcaacaattgttttcttaaacaaacttaaatctttatatatgctagccaagacagctggtgccaaagcaa 19812428  T
Q  113 caatgttccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaag 212  Q
     |   | ||||||||||||| ||||||   | || ||||||||| |  |||||||||||| ||| ||||| ||||||||||||||||||||||||| |||    
T  19812427 taggataccctctagcaagaagaatag---cgatcggaaacaaagactttttcaccaaatatttatgaggaaaaacaaaaattgacaaccaagtagcaag 19812331  T
Q  213 gaatgcttcatgttcaatttcactaactttatcaatgaaaatactcatctctattgatgttctaaccttaccttgtttactct 295  Q
     |||||||||||||||||||||||| ||||| ||| ||||||| | |||  | |||||||  || ||||||||| ||||||||    
T  19812330 aaatgcttcatgttcaatttcactacctttaccaacgaaaatattgatccattttgatgtggtagccttaccttttttactct 19812248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 13 - 246
Target Start/End: Original strand, 20016069 - 20016302
Alignment:
Q  13 ctatcaccaccaacttgatattttgataaaccaactattgttttcttaaataaacttagatctttatatatgctagccaannnnnnnggtgctaatgcaa 112  Q
    ||||||||||| || ||||||||||| ||| |||| |||||||||||||| ||||||| |||||||||||||||||||||       ||||| || ||||    
T  20016069 ctatcaccacccacatgatattttgacaaatcaacaattgttttcttaaacaaacttaaatctttatatatgctagccaagacagctggtgccaaagcaa 20016168  T
Q  113 caatgttccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaa---tctttgtgagggaaaacaaaaattgacaaccaagtagt 209  Q
     |   || | |||||||||||||||||   |||| ||||||||| ||||||||||  ||   | ||| |||||||||||||||||||||| ||||||||     
T  20016169 taggatttcgtctagcaagatgaatag---caatcggaaacaaacaacttttcacggaagagtatttatgagggaaaacaaaaattgacagccaagtagc 20016265  T
Q  210 aaggaatgcttcatgttcaatttcactaactttatca 246  Q
    ||| |||||||||||||||||||||||| ||||||||    
T  20016266 aagaaatgcttcatgttcaatttcactacctttatca 20016302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 20036471 - 20036713
Alignment:
Q  13 ctatcaccaccaacttgatattttgataaaccaactattgttttcttaaataaacttagatctttatatatgctagccaannnnnnnggtgctaatgcaa 112  Q
    |||||||||||||| ||| ||||||| ||| |||| |||||||||||||| ||| ||| ||| |||||||  ||||| ||       |||||||| ||||    
T  20036471 ctatcaccaccaacatgacattttgacaaatcaacaattgttttcttaaacaaagttaaatccttatatagactagctaaaacagcaggtgctaaagcaa 20036570  T
Q  113 caatgttccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatc---tttgtgagggaaaacaaaaattgacaaccaagtagt 209  Q
     |   || |||||||||||||  | ||   |||||||||||||| |||||||||||||||    ||| ||||| |||||||||| ||||||||||||||     
T  20036571 tacgatttcctctagcaagatatacag---caataggaaacaaagaacttttcaccaaatagtttttatgaggaaaaacaaaaagtgacaaccaagtagc 20036667  T
Q  210 aaggaatgcttcatgttcaatttcactaactttatcaatgaaaata 255  Q
    ||| |||||||||||||||||||||||| |||||||||||||||||    
T  20036668 aagaaatgcttcatgttcaatttcactacctttatcaatgaaaata 20036713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 20046370 - 20046135
Alignment:
Q  13 ctatcaccaccaacttgatattttgataaaccaactattgttttcttaaataaacttagatctttatatatgctagccaannnnnnnggtgctaatgcaa 112  Q
    ||||||||||||||  |||||||| | | | |||  ||||| |||||||||||||||| ||| |||||||||||| ||||       ||||| || ||||    
T  20046370 ctatcaccaccaaccggatattttaacagatcaataattgtgttcttaaataaacttaaatccttatatatgctacccaaaacagcaggtgccaaagcaa 20046271  T
Q  113 caatgttccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaag 212  Q
         || ||||||||||||| |||||   |||||| ||||||| || ||||||||| || ||| ||||| |||||||||||||||||||||||||||||    
T  20046270 ttggatttcctctagcaagattaatag---caatagaaaacaaacaatttttcaccatatttttatgaggaaaaacaaaaattgacaaccaagtagtaag 20046174  T
Q  213 gaatgcttcatgttcaatttcactaactttatcaatgaa 251  Q
    ||| ||||| ||||||||||||||| ||||||| |||||    
T  20046173 gaaggcttcgtgttcaatttcactacctttatcgatgaa 20046135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 13 - 276
Target Start/End: Complemental strand, 19956334 - 19956071
Alignment:
Q  13 ctatcaccaccaacttgatattttgataaaccaactattgttttcttaaataaacttagatctttatatatgctagccaannnnnnnggtgctaatgcaa 112  Q
    ||||||||||| ||  |||||||||| ||| ||||| || ||||||| || ||| ||| ||| |||||||||||||| ||       ||||| || ||||    
T  19956334 ctatcaccacccacaggatattttgacaaatcaactgtttttttctttaacaaagttaaatccttatatatgctagctaaaacagctggtgccaaagcaa 19956235  T
Q  113 caatgttccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaa---tctttgtgagggaaaacaaaaattgacaaccaagtagt 209  Q
     |   || |||||||||||||||| |    |||||||||||||| ||||||||||  ||   | ||| |||||||||||||||||||||||||||||||     
T  19956234 taggatttcctctagcaagatgaacaa---caataggaaacaaataacttttcacggaagaatatttatgagggaaaacaaaaattgacaaccaagtagc 19956138  T
Q  210 aaggaatgcttcatgttcaatttcactaactttatcaatgaaaatactcatctctattgatgttcta 276  Q
    ||| || ||||||||||||||||||||| |||||||||||||||||  ||||  || ||||||||||    
T  19956137 aagaaaagcttcatgttcaatttcactacctttatcaatgaaaatatccatccatagtgatgttcta 19956071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 13 - 255
Target Start/End: Complemental strand, 19849240 - 19848998
Alignment:
Q  13 ctatcaccaccaacttgatattttgataaaccaactattgttttcttaaataaacttagatctttatatatgctagccaannnnnnnggtgctaatgcaa 112  Q
    |||||||||||||| ||| ||||||| ||| ||   |||||||||||||| ||| ||| ||| |||||||  ||||| ||       |||||||| ||||    
T  19849240 ctatcaccaccaacatgacattttgacaaatcagtgattgttttcttaaacaaagttaaatccttatatagactagctaaaacagcaggtgctaaagcaa 19849141  T
Q  113 caatgttccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatc---tttgtgagggaaaacaaaaattgacaaccaagtagt 209  Q
     |   || |||||||||||||  | ||   |||||||||||||| |||||||||||||||    ||| ||||| |||||||||| ||||||||||||||     
T  19849140 tacgatttcctctagcaagatatacag---caataggaaacaaagaacttttcaccaaatagtttttatgaggaaaaacaaaaagtgacaaccaagtagc 19849044  T
Q  210 aaggaatgcttcatgttcaatttcactaactttatcaatgaaaata 255  Q
    ||| |||||||||||||||||||||||| |||||||||||||||||    
T  19849043 aagaaatgcttcatgttcaatttcactacctttatcaatgaaaata 19848998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 118 - 252
Target Start/End: Complemental strand, 26647146 - 26647015
Alignment:
Q  118 ttccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatg 217  Q
    ||||||||||||||||||| ||   |||||||||||||| ||||||||||||||| |   ||||| |||||| ||| |||||||||||||| ||||||||    
T  26647146 ttccctctagcaagatgaacag---caataggaaacaaacaacttttcaccaaatttagatgaggaaaaacataaactgacaaccaagtagaaaggaatg 26647050  T
Q  218 cttcatgttcaatttcactaactttatcaatgaaa 252  Q
    |||||||||||||||||||| ||||||| ||||||    
T  26647049 cttcatgttcaatttcactacctttatccatgaaa 26647015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 13 - 255
Target Start/End: Complemental strand, 26653399 - 26653160
Alignment:
Q  13 ctatcaccaccaacttgatattttgataaaccaactattgttttcttaaataaacttagatctttatatatgctagccaannnnnnnggtgctaatgcaa 112  Q
    |||||||||||||| | ||||||||| |||||||| |||||||||||||| ||| | |  || |||||||| ||||| ||       ||||| || ||||    
T  26653399 ctatcaccaccaacataatattttgacaaaccaacaattgttttcttaaacaaagtcaagtccttatatatactagctaaaacagctggtgccaaagcaa 26653300  T
Q  113 caatgttccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaag 212  Q
     |   || |||||||||||||||| ||   |||||| ||||||| |||||||||| || ||| | ||||| ||||||||||||||||||||||  | |||    
T  26653299 taggatttcctctagcaagatgaacag---caatagaaaacaaagaacttttcactaattctatatgaggaaaaacaaaaattgacaaccaagctgcaag 26653203  T
Q  213 gaatgcttcatgttcaatttcactaactttatcaatgaaaata 255  Q
    |||||| |||||||||||||||||| |||  ||||||||||||    
T  26653202 gaatgcatcatgttcaatttcactaccttagtcaatgaaaata 26653160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 13 - 254
Target Start/End: Complemental strand, 19818804 - 19818566
Alignment:
Q  13 ctatcaccaccaacttgatattttgataaaccaactattgttttcttaaataaacttagatctttatatatgctagccaannnnnnnggtgctaatgcaa 112  Q
    ||||||||||||||   ||||||||| ||| |||||||| |||||||||| ||||||| ||||||||| ||| |||||||       ||||| || ||||    
T  19818804 ctatcaccaccaacagaatattttgacaaatcaactatttttttcttaaacaaacttaaatctttataaatgttagccaaaacagccggtgccaaagcaa 19818705  T
Q  113 caatgttccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaag 212  Q
     |   |||||||||||||||| || ||   ||| |||||||| | || ||||||||||||  || ||||| |||||||||||||| |||||||||| |||    
T  19818704 taggattccctctagcaagattaacag---caacaggaaacagataatttttcaccaaattcttatgaggaaaaacaaaaattgataaccaagtagcaag 19818608  T
Q  213 gaatgcttcatgttcaatttcactaactttatcaatgaaaat 254  Q
     || |||||||||||||||||  || ||||| |||| |||||    
T  19818607 aaaagcttcatgttcaatttcggtacctttaccaataaaaat 19818566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 13 - 255
Target Start/End: Complemental strand, 19951371 - 19951132
Alignment:
Q  13 ctatcaccaccaacttgatattttgataaaccaactattgttttcttaaataaacttagatctttatatatgctagccaannnnnnnggtgctaatgcaa 112  Q
    ||||||||||| || ||||||||||| ||| |||| |||| ||| ||||| ||| ||| ||| |||||||||||||| ||       || || || ||||    
T  19951371 ctatcaccacccacatgatattttgacaaatcaacaattgcttttttaaacaaagttaaatccttatatatgctagctaaaacagctggagccaaagcaa 19951272  T
Q  113 caatgttccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaag 212  Q
     |   || |||||||||||||||||||   ||||||| | | || ||||  ||||||| |  || | ||| |||||||||| |||||||||||||  |||    
T  19951271 taggatttcctctagcaagatgaatag---caataggtagcgaataactcctcaccaatttattattaggaaaaacaaaaagtgacaaccaagtaacaag 19951175  T
Q  213 gaatgcttcatgttcaatttcactaactttatcaatgaaaata 255  Q
    ||| ||||||||||||||||||||| |||||||| ||||||||    
T  19951174 gaaggcttcatgttcaatttcactacctttatcagtgaaaata 19951132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 178 - 255
Target Start/End: Original strand, 24840007 - 24840084
Alignment:
Q  178 tgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaactttatcaatgaaaata 255  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||| |||| ||||||| ||||||| |||||||||    
T  24840007 tgagggaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaacttcactacctttatcgatgaaaata 24840084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 44 - 253
Target Start/End: Complemental strand, 19853731 - 19853522
Alignment:
Q  44 caactattgttttcttaaataaacttagatctttatatatgctagccaannnnnnnggtgctaatgcaacaatgttccctctagcaagatgaataggcgc 143  Q
    |||| ||| |||||||||| ||||| | ||| ||||||| |||||||||       ||||| || |||| | | || |||||||||||| ||||||   |    
T  19853731 caacaatttttttcttaaacaaactcaaatcgttatataagctagccaaaacagcaggtgccaaagcaatagtattacctctagcaagacgaatag---c 19853635  T
Q  144 aataggaaacaaaaaacttttcaccaaa---tctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaact 240  Q
    ||||||||||||| | |||||||| | |   | | | ||||| ||||||||||| ||||||||||||| ||| |||||||||||||||||||||||| ||    
T  19853634 aataggaaacaaagatcttttcacaataaagtatctatgaggaaaaacaaaaatagacaaccaagtagcaagaaatgcttcatgttcaatttcactacct 19853535  T
Q  241 ttatcaatgaaaa 253  Q
    ||| ||| |||||    
T  19853534 ttaccaaagaaaa 19853522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 184 - 255
Target Start/End: Complemental strand, 19858151 - 19858080
Alignment:
Q  184 aaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaactttatcaatgaaaata 255  Q
    ||||||||||||||||||||||||| ||| ||||||||||| |||||||||||| ||||||| |||||||||    
T  19858151 aaaacaaaaattgacaaccaagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaata 19858080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 19943792 - 19943728
Alignment:
Q  191 aaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaactttatcaatgaaaata 255  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||| ||||||| |||||||||    
T  19943792 aaattgacaaccaagtagcaagaaatgcttcatgttcaatttcactacctttatcgatgaaaata 19943728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 253
Target Start/End: Complemental strand, 19989599 - 19989532
Alignment:
Q  186 aacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaactttatcaatgaaaa 253  Q
    ||||||||||||||||||||||| ||| |||||||||||||||| |||| || |||||||||||||||    
T  19989599 aacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaagttcattacctttatcaatgaaaa 19989532  T

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Target: chr3; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 276
Target Start/End: Complemental strand, 19838472 - 19838380
Alignment:
Q  184 aaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaactttatcaatgaaaatactcatctctattgatgttcta 276  Q
    |||||||||||||||||||||||||  || || ||||||||||||||||| ||| ||||||| |||||||||  ||||  || ||||||||||    
T  19838472 aaaacaaaaattgacaaccaagtagctagaaaagcttcatgttcaatttcgctacctttatcgatgaaaatatccatccatagtgatgttcta 19838380  T

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Target: chr1 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 13 - 247
Target Start/End: Complemental strand, 1717461 - 1717230
Alignment:
Q  13 ctatcaccaccaacttgatattttgataaaccaactattgttttcttaaataaacttagatctttatatatgctagccaannnnnnnggtgctaatgcaa 112  Q
    ||||| ||||||||  |||||||||| ||||||||||||||||||||||| ||| ||| ||| |||||||||||||| ||       ||||| || ||||    
T  1717461 ctatcgccaccaacaggatattttgacaaaccaactattgttttcttaaacaaagttaaatccttatatatgctagctaaaacagccggtgccaaagcaa 1717362  T
Q  113 caatgttccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaag 212  Q
     |   || |||||||||||||||| ||   |||||||||||||| |  ||||||||||| |||| ||||| |||||| |||  ||||||||||||| |||    
T  1717361 taggatttcctctagcaagatgaacag---caataggaaacaaagattttttcaccaaagctttatgaggaaaaacataaaccgacaaccaagtagcaag 1717265  T
Q  213 gaatgcttcatgttcaatttcactaactttatcaa 247  Q
     |||||||||||||||||||||||| |||||||||    
T  1717264 aaatgcttcatgttcaatttcactacctttatcaa 1717230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 32 - 253
Target Start/End: Complemental strand, 9815265 - 9815047
Alignment:
Q  32 attttgataaaccaactattgttttcttaaataaacttagatctttatatatgctagccaannnnnnnggtgctaatgcaacaatgttccctctagcaag 131  Q
    ||||||| |||  |||||||||||||||||| ||||||| ||| ||||| || ||||| ||       ||||| || |||| |   || |||||||||||    
T  9815265 attttgacaaattaactattgttttcttaaacaaacttaaatcgttataaatactagctaaaacagctggtgccaaagcaatagaatttcctctagcaag 9815166  T
Q  132 atgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatt 231  Q
    ||||||||   |||||| ||||||| ||||||||||||||  ||| ||||  |||||||| ||||||||||| |||| || ||| |||||||| ||||||    
T  9815165 atgaatag---caatagaaaacaaagaacttttcaccaaagatttatgagttaaaacaaagattgacaaccacgtagcaatgaacgcttcatgctcaatt 9815069  T
Q  232 tcactaactttatcaatgaaaa 253  Q
    |||||| |||| || |||||||    
T  9815068 tcactacctttgtcgatgaaaa 9815047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 121 - 253
Target Start/End: Original strand, 26354903 - 26355035
Alignment:
Q  121 cctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaa-atc--tttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatg 217  Q
    |||||||||||||||||||   |||||||||||||| ||||||||||||| ||   |||   ||| |||||||||||||| ||||||| |  || |||||    
T  26354903 cctctagcaagatgaatag---caataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataaccaagcaacaatgaatg 26354999  T
Q  218 cttcatgttcaatttcactaactttatcaatgaaaa 253  Q
    |||||||||||| ||||||| ||||||| |||||||    
T  26355000 cttcatgttcaacttcactacctttatccatgaaaa 26355035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 184 - 255
Target Start/End: Original strand, 22652127 - 22652198
Alignment:
Q  184 aaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaactttatcaatgaaaata 255  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||| |||||||||    
T  22652127 aaaacaaaaattgacaaccaagtagcaaggaacgcttcatgttcaatttcactacctttatcgatgaaaata 22652198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 118 - 243
Target Start/End: Original strand, 22685656 - 22685778
Alignment:
Q  118 ttccctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatg 217  Q
    ||||||||||||||||||||||   |||| ||||||| | || |||||||||||  ||| ||||| |||||||||| ||||||||||| || ||| ||||    
T  22685656 ttccctctagcaagatgaatag---caatcggaaacatagaagttttcaccaaaattttatgaggaaaaacaaaaagtgacaaccaagcagcaagaaatg 22685752  T
Q  218 cttcatgttcaatttcactaacttta 243  Q
    ||||||| |||||||||||| |||||    
T  22685753 cttcatgctcaatttcactaccttta 22685778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 253
Target Start/End: Original strand, 22689564 - 22689763
Alignment:
Q  54 tttcttaaataaacttagatctttatatatgctagccaannnnnnnggtgctaatgcaacaatgttccctctagcaagatgaataggcgcaataggaaac 153  Q
    ||||||||| ||||| | ||| |||||||||||||||||       ||||| || |||| | | || |||||||| ||||||||||    ||||| ||||    
T  22689564 tttcttaaacaaactcaaatccttatatatgctagccaaaacagcaggtgccaaagcaatagtattgcctctagccagatgaataga---aatagtaaac 22689660  T
Q  154 aaaaaacttttcaccaa---atctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaactttatcaatga 250  Q
    ||| ||||||| ||| |   || ||| ||||| ||||||||||||||||||||||||| ||| |||||||||||||||| |||| || | ||||| ||||    
T  22689661 aaagaacttttgaccgacatatttttatgaggaaaaacaaaaattgacaaccaagtagcaagaaatgcttcatgttcaaattcattaccattatcgatga 22689760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 123 - 231
Target Start/End: Complemental strand, 12581529 - 12581424
Alignment:
Q  123 tctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttca 222  Q
    ||||||||||| |||||   |||||| ||||||| ||||||||||||  | | |  |||| ||||||||||||||||||||||||| |||||| ||||||    
T  12581529 tctagcaagattaatag---caatagaaaacaaataacttttcaccatttttctacgaggaaaaacaaaaattgacaaccaagtagcaaggaaggcttca 12581433  T
Q  223 tgttcaatt 231  Q
    |||||||||    
T  12581432 tgttcaatt 12581424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 231
Target Start/End: Complemental strand, 12497346 - 12497241
Alignment:
Q  123 tctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttca 222  Q
    ||||||||||| |||||   |||||| ||||||| ||||| ||||||  | | | ||||| |||||||||||||||||||| |||| |||||| ||||||    
T  12497346 tctagcaagattaatag---caatagaaaacaaataacttatcaccatttttctatgaggaaaaacaaaaattgacaaccaggtagcaaggaaggcttca 12497250  T
Q  223 tgttcaatt 231  Q
    |||||||||    
T  12497249 tgttcaatt 12497241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 231
Target Start/End: Complemental strand, 12521211 - 12521106
Alignment:
Q  123 tctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttca 222  Q
    ||||||||||| |||||   |||||| ||||||| ||||| ||||||  | | | ||||| |||||||||||||||||||| |||| |||||| ||||||    
T  12521211 tctagcaagattaatag---caatagaaaacaaataacttatcaccatttttctatgaggaaaaacaaaaattgacaaccaggtagcaaggaaggcttca 12521115  T
Q  223 tgttcaatt 231  Q
    |||||||||    
T  12521114 tgttcaatt 12521106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 12519825 - 12519878
Alignment:
Q  178 tgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatt 231  Q
    ||||| |||||||||||||||||||||||   |||||| |||||||||||||||    
T  12519825 tgaggaaaaacaaaaattgacaaccaagttaaaaggaaggcttcatgttcaatt 12519878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 12580114 - 12580167
Alignment:
Q  178 tgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatt 231  Q
    ||||| ||||||||||||||||||||||||  |||||| || ||||||||||||    
T  12580114 tgaggaaaaacaaaaattgacaaccaagtaaaaaggaaggcctcatgttcaatt 12580167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 12581632 - 12581560
Alignment:
Q  20 caccaacttgatattttgataaaccaactattgttttcttaaataaacttagatctttatatatgctagccaa 92  Q
    |||||||  |||||||||| | | |||  |||||||||||||||||| ||| ||| |||| ||||||||||||    
T  12581632 caccaacaagatattttgacagatcaataattgttttcttaaataaagttaaatccttatttatgctagccaa 12581560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 156 - 251
Target Start/End: Original strand, 6397749 - 6397844
Alignment:
Q  156 aaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaactttatcaatgaa 251  Q
    ||||||||||||||  | |||  |||| ||| || ||||||||||||| |||| |||||| ||||||||||||||||||||| ||||||| |||||    
T  6397749 aaaacttttcaccatttttttaggaggaaaagcacaaattgacaaccaggtagcaaggaaggcttcatgttcaatttcactacctttatcgatgaa 6397844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 244
Target Start/End: Complemental strand, 6398382 - 6398280
Alignment:
Q  142 gcaataggaaacaaaaaacttttcaccaaatctttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatgcttcatgttcaatttcactaactt 241  Q
    ||||||| ||||||| ||||||||||||    |||   ||| |||||||||||| |||||||| ||| |||||| ||||||||||||||||||||| |||    
T  6398382 gcaatagaaaacaaacaacttttcaccattgttttactaggaaaaacaaaaattaacaaccaattagcaaggaaggcttcatgttcaatttcactacctt 6398283  T
Q  242 tat 244  Q
    |||    
T  6398282 tat 6398280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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