View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_low_48 (Length: 333)
Name: NF20783_low_48
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_low_48 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 8e-89; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 161 - 326
Target Start/End: Complemental strand, 44253398 - 44253233
Alignment:
| Q |
161 |
atttttgcactcaatcttctattcactgctacctatagctctaatttgtctatacttttacttccactcatttgctccatttttcactcccatcactcac |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44253398 |
atttttgcactcaatcttctattcactgctacctatagctctaatttgtctatacttttacttccactcatttgctccatttttcactcccatcactcac |
44253299 |
T |
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| Q |
261 |
caatcttcactttctgcttcccctcctttgagaaaaggtaaattcattagtaatgtgcctttgcta |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44253298 |
caatcttcactttctgcttcccctcctttgagaaaaggtaaattcattagtaatgtgcctttgcta |
44253233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 161 - 326
Target Start/End: Complemental strand, 44249788 - 44249623
Alignment:
| Q |
161 |
atttttgcactcaatcttctattcactgctacctatagctctaatttgtctatacttttacttccactcatttgctccatttttcactcccatcactcac |
260 |
Q |
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|||| ||| |||||| ||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
44249788 |
atttgtgccctcaattttctattcactactacctttcgctctaatttgtctatacttttacttccactcatttgctccaattttcacttccatcactcac |
44249689 |
T |
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| Q |
261 |
caatcttcactttctgcttcccctcctttgagaaaaggtaaattcattagtaatgtgcctttgcta |
326 |
Q |
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| T |
44249688 |
caatcttcactttttgcttcccctcctttgagaaaaggtaaactcactagcaatgtacctttgcta |
44249623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 44253558 - 44253475
Alignment:
| Q |
1 |
taaaaaatagtaaataattaatgtcagcacggtnnnnnnnngggaataaaccaatcttagaatgatcaccacttgaccaagtga |
84 |
Q |
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| T |
44253558 |
taaaaaatagtaaataattaatgtcagcacggtaaaaccaagggaataaaccaatcttagaatgatcaccccttgaccaagtga |
44253475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 170 - 326
Target Start/End: Original strand, 15273641 - 15273800
Alignment:
| Q |
170 |
ctcaatcttctattcactgctacctatagctctaatttgtctatacttttacttccactcatttgctccatttttcactcccatca---ctcaccaatct |
266 |
Q |
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|||||| |||||||| ||| ||| | |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
15273641 |
ctcaattttctattcgctgttacttgtagctctattttgcctatacttttacttccactcatttgctccatttttcactcccatcatccctcaccaatct |
15273740 |
T |
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| Q |
267 |
tcactttctgcttcccctcctttgagaaaaggtaaattcattagtaatgtgcctttgcta |
326 |
Q |
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||||||||| ||||||||||||||||||||||| || ||| ||| | ||| ||||||||| |
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| T |
15273741 |
tcactttcttcttcccctcctttgagaaaaggtgaactcactagcactgtacctttgcta |
15273800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 177 - 326
Target Start/End: Complemental strand, 11821510 - 11821361
Alignment:
| Q |
177 |
ttctattcactgctacctatagctctaatttgtctatacttttacttccactcatttgctccatttttcactcccatcactcaccaatcttcactttctg |
276 |
Q |
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|||||||| |||||||| |||||||| |||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
11821510 |
ttctattctttgctacctttagctctagtttgcctatacttttacttctcctcatttgctccattttacactcccatcactcaccaaccttcactttcta |
11821411 |
T |
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| Q |
277 |
cttcccctcctttgagaaaaggtaaattcattagtaatgtgcctttgcta |
326 |
Q |
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|||||||| ||| | |||||||||||| | ||| ||||| |||||||| |
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| T |
11821410 |
tttcccctcatttaacaaaaggtaaattaactagcaatgtaactttgcta |
11821361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 216 - 280
Target Start/End: Original strand, 51381538 - 51381602
Alignment:
| Q |
216 |
ttttacttccactcatttgctccatttttcactcccatcactcaccaatcttcactttctgcttc |
280 |
Q |
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||||||| ||||| |||||||||||||||| | ||||||||||||| ||||||||||||||||| |
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| T |
51381538 |
ttttactgtcactcttttgctccatttttcagtaccatcactcaccactcttcactttctgcttc |
51381602 |
T |
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