View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_low_49 (Length: 328)
Name: NF20783_low_49
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 11 - 312
Target Start/End: Original strand, 27559780 - 27560081
Alignment:
| Q |
11 |
cacagacaggtgcttcttttcactacttagaacaacaagtccaataataacattaactagactaaactctgccactactgaacaacctctgataagcata |
110 |
Q |
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| T |
27559780 |
cacagacaggtgcttcttttcattacttagaacaacaagtccaataataacattaactagactaaactctgccactactgaacaacctctgataagcata |
27559879 |
T |
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| Q |
111 |
cctttttctgatgatcctccaggccatacattcccagaacaaattccaactcctgattctcctcctgtaacttttcaatctgtaacaaaacaccttaatg |
210 |
Q |
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| T |
27559880 |
cctttttctgatgatcctccaggccatacatttccagaacaaattccaactcctgattctcctcctgtaacttttcaatctgtaacaaaacaccttaatg |
27559979 |
T |
|
| Q |
211 |
agttgtttgaaattatagacaatcttgaaggcctctaaaatcacaatgcagataatgtttgagaaatatggaaagtataggagcagatacacatgcaaaa |
310 |
Q |
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| T |
27559980 |
agttgtttgaaattatagacaatcttgaaggcctctaaaatcacaatgcagataatgtttgagaaatatggaaagtataggagcagatacacatgcaaaa |
27560079 |
T |
|
| Q |
311 |
ca |
312 |
Q |
| |
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|| |
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| T |
27560080 |
ca |
27560081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 38 - 312
Target Start/End: Original strand, 36667371 - 36667643
Alignment:
| Q |
38 |
tagaacaacaagtccaataataacattaactagactaaactctgccactactgaacaacctctgataagcatacctttttctgatgatcctccaggccat |
137 |
Q |
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| T |
36667371 |
tagaataacgagtccaataattacattaactagactaaactctgccactactgaacaacttcagatcagcatacctttt-ctgataatcctccagaccat |
36667469 |
T |
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| Q |
138 |
acattcccagaacaaattccaactcctgattctcctcctgtaacttttcaatctgtaacaaaacaccttaatgagttgtttgaaattatagacaatcttg |
237 |
Q |
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|||| ||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36667470 |
acatatccaaaacaaattctaactcctggttctcctcctgtaacttttcaatctgtaacaaaacaccttaatgagttgtttgaaattagagacaatctt- |
36667568 |
T |
|
| Q |
238 |
aaggcctctaaaatcacaatgcagataatgtttgagaaatatggaaagtataggagcagatacacatgcaaaaca |
312 |
Q |
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|||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
36667569 |
aaggcctctaaaatcagaatgcagataatgtttgagaatcatggaaagtatagttgcagatacacatgcaaaaca |
36667643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 38 - 312
Target Start/End: Original strand, 29409207 - 29409485
Alignment:
| Q |
38 |
tagaacaacaagtccaataataacattaactagactaaactctgccactactgaacaacctctgataagcatacctttttctgatgatcctccaggccat |
137 |
Q |
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||||| |||||||| || ||| |||||||||||||||| ||||||||||||||||||||| | ||| |||||||||||| ||||| ||| || ||||||| |
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| T |
29409207 |
tagaataacaagtcaaaaaattacattaactagactaagctctgccactactgaacaaccccagatcagcatacctttt-ctgataatcttctaggccat |
29409305 |
T |
|
| Q |
138 |
acattcccagaacaaattccaactcctgattctcctcctgtaacttttcaatctgtaacaaaacaccttaatgagttgtttgaaa-----ttatagacaa |
232 |
Q |
| |
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|||| ||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||| |
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| T |
29409306 |
acatatccaaaacaaattctaactcccgattctcctcctgtaacttttcaatctgtaacaaaacatcttaatgagttggttgaaaattagttatagacaa |
29409405 |
T |
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| Q |
233 |
tcttgaaggcctctaaaatcacaatgcagataatgtttgagaaatatggaaagtataggagcagatacacatgcaaaaca |
312 |
Q |
| |
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||||||||||| ||||||||| |||||| |||||||||||||| ||||||| |||||| ||||||||||| |||||||| |
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| T |
29409406 |
tcttgaaggccactaaaatcataatgcatataatgtttgagaatcatggaaaatataggtgcagatacacaagcaaaaca |
29409485 |
T |
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