View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20783_low_5 (Length: 651)
Name: NF20783_low_5
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_low_5 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 586; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 8 - 633
Target Start/End: Original strand, 4159629 - 4160254
Alignment:
| Q |
8 |
tgagatgaacataccaaatattatccacaatcatggcaaaccaattactctttccaacttagtttcaattcttcaaattccatcaaccaaagtcgataac |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4159629 |
tgagatgaacataccaaatattatccacaatcatggcaaaccaattactctttcaaacttagtttcaattcttcaaattccatcaaccaaagtcgataac |
4159728 |
T |
|
| Q |
108 |
gtgcagcgtctcatgcgttacctcgcacacaatggattctttgagataattacaaatcaagaattagaaaatgaagaagaagcttatgctctcactgttg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4159729 |
gtgcagcgtctcatgcgttacctcgcacacaatggattctttgagataattacaaatcaagaattagaaaatgaagaagaagcttatgctctcactgttg |
4159828 |
T |
|
| Q |
208 |
cttcagagcttcttgttaaaggaactgaactttgtttagctccaatggttgagtgtgttcttgatccaacactttcagcttcatttcataagttaaagaa |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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|
| T |
4159829 |
cttcagagcttcttgttaaaggaactgaactttgtttagctccaatggttgagtgtgttcttgatccaacactttcaacttcatttcataacttaaagaa |
4159928 |
T |
|
| Q |
308 |
atgggtttatgaggaagatctcactctatttactgtcaatttaggttgtgatttatgggagtttcttaacaaaaaccctgagtataatacattatacaat |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4159929 |
atgggtttatgaggaagatctcactctatttgctgtcaatttaggttgtgatttatgggagtttcttaacaaaaaccctgagtataatacattatacaat |
4160028 |
T |
|
| Q |
408 |
gatgctttggctagtgattcaaaaatgattaatttggcaatgaaagattgtaatttggtgtttgaggggttggaatcaattgtggatgttggtggtggaa |
507 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4160029 |
gatgctttggctagtgattccaaaatgattaatttggcaatgaaagattgcaatttggtgtttgaggggttggaatcaattgtggatgttggtggtggaa |
4160128 |
T |
|
| Q |
508 |
atggaacaactggtaagattatttgtgagacattttctaagttgaaatgtgttgtttttgatcgtccaaaggttgtagagaatttatgtggaaataacaa |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
4160129 |
atggaacaactggtaagattatttgtgagacatttcctaagttgacttgtgttgtttttgatcgtccaaaggttgtagagaatttatgtggaagtaacaa |
4160228 |
T |
|
| Q |
608 |
tttgacatatgttggtggggacatgt |
633 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
4160229 |
tttgacatatgttggtggggacatgt |
4160254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 16 - 633
Target Start/End: Complemental strand, 4172365 - 4171748
Alignment:
| Q |
16 |
acataccaaatattatccacaatcatggcaaaccaattactctttccaacttagtttcaattcttcaaattccatcaaccaaagtcgataacgtgcagcg |
115 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4172365 |
acataccaactattatctacaatcatggcaaaccaattactctttcaaacttagtttcaattcttcaaattccatcaaccaaagtcgataacgtgcagcg |
4172266 |
T |
|
| Q |
116 |
tctcatgcgttacctcgcacacaatggattctttgagataattacaaatcaagaattagaaaatgaagaagaagcttatgctctcactgttgcttcagag |
215 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||| | || ||||||||||| ||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
4172265 |
tctcatgcgtctccttgcacacaatggattctttgagatagtaacgaatcaagaattggaaaatgaagaagaagcttatgctctcacagttacttcagag |
4172166 |
T |
|
| Q |
216 |
cttcttgttaaaggaactgaactttgtttagctccaatggttgagtgtgttcttgatccaacactttcagcttcatttcataagttaaagaaatgggttt |
315 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | | || | |||||||||||| || ||||| ||| ||| |
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|
| T |
4172165 |
cttcttgttaaagggactgaactttgtttagctccaatggttgagtgtgttcttgatcctaaatttaatgtttcatttcataatttcaagaagtggattt |
4172066 |
T |
|
| Q |
316 |
atgaggaagatctcactctatttactgtcaatttaggttgtgatttatgggagtttcttaacaaaaaccctgagtataatacattatacaatgatgcttt |
415 |
Q |
| |
|
|||||||||||||||| || ||| || | |||||| ||||||||||||||||||||||||||||| ||||| ||||||| ||| | |||||||||| | |
|
|
| T |
4172065 |
atgaggaagatctcaccctctttgctacctctttaggatgtgatttatgggagtttcttaacaaaaatcctgaatataatagattgttcaatgatgctat |
4171966 |
T |
|
| Q |
416 |
ggctagtgattcaaaaatgattaatttggcaatgaaagattgtaatttggtgtttgaggggttggaatcaattgtggatgttggtggtggaaatggaaca |
515 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4171965 |
ggctagtgattccaaaatgattaatttggcattgaaagattgcaattttgtgtttgaggggttggattcaattgtggatgttggtggtggaaatggaaca |
4171866 |
T |
|
| Q |
516 |
actggtaagattatttgtgagacattttctaagttgaaatgtgttgtttttgatcgtccaaaggttgtagagaatttatgtggaaataacaatttgacat |
615 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4171865 |
actggtaagattatttgtgagacatatcctaagttgagatgtgttgtttttgatcgtccaaaggttgtagagaatttatgtggaagtaacaatttgacat |
4171766 |
T |
|
| Q |
616 |
atgttggtggggacatgt |
633 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
4171765 |
atgtcggtggggacatgt |
4171748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 12 - 633
Target Start/End: Complemental strand, 4177977 - 4177371
Alignment:
| Q |
12 |
atgaacataccaaatattatccacaatcatggcaaaccaattactctttccaacttagtttcaattcttcaaattccatcaaccaaagtcgataacgtgc |
111 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| | ||||| || |||||||||||||||||| ||||||| | ||| | | |||||||| |
|
|
| T |
4177977 |
atgaacataccaaatattattcacaatcatggcaaaccaatttcactttcaaatttagtttcaattcttcaagttccatcgtcgaaaataggtaacgtgc |
4177878 |
T |
|
| Q |
112 |
agcgtctcatgcgttacctcgcacacaatggattctttgagataattacaaatcaagaattagaaaatgaagaagaagcttatgctctcactgttgcttc |
211 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
4177877 |
ggcgtctcatgcgttacctcgcgcacaacggattctttgagataattacaaaa---------------gaagaagagtcttatgctctcactgttgcttc |
4177793 |
T |
|
| Q |
212 |
agagcttcttgttaaaggaactgaactttgtttagctccaatggttgagtgtgttcttgatccaacactttcagcttcatttcataagttaaagaaatgg |
311 |
Q |
| |
|
|||||||||||||| ||| | ||| ||||||||||| ||||||||||||||||||||||||||||| ||||| | ||| | |||| || | ||||||||| |
|
|
| T |
4177792 |
agagcttcttgttagaggtagtgatctttgtttagcaccaatggttgagtgtgttcttgatccaactctttcgggttcgtatcatgagctgaagaaatgg |
4177693 |
T |
|
| Q |
312 |
gtttatgaggaagatctcactctatttactgtcaatttaggttgtgatttatgggagtttcttaacaaaaaccctgagtataatacattatacaatgatg |
411 |
Q |
| |
|
|||||||||||||||| || || ||| ||| | |||||| | || ||| ||||| |||||| | ||||| ||||| ||||||| || || ||||||| |
|
|
| T |
4177692 |
atttatgaggaagatcttacactctttggtgttactttagggtctggtttttgggattttcttgataaaaatcctgaatataatagatcatttaatgatg |
4177593 |
T |
|
| Q |
412 |
ctttggctagtgattcaaaaatgattaatttggcaatgaaagattgtaatttggtgtttgaggggttggaatcaattgtggatgttggtggtggaaatgg |
511 |
Q |
| |
|
| ||||||||||||| ||| |||| || |||||| ||| ||||||| |||| |||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4177592 |
caatggctagtgattctaaattgataaacttggcattgagagattgtgattttgtgtttgatggattggaatcaattgtggatgttggtggtggaaatgg |
4177493 |
T |
|
| Q |
512 |
aacaactggtaagattatttgtgagacattttctaagttgaaatgtgttgtttttgatcgtccaaaggttgtagagaatttatgtggaaataacaatttg |
611 |
Q |
| |
|
||| |||||||| |||||||||||||| ||| |||||||||||||| |||| |||||| | ||| | ||||||||||| |||| ||||| || |||||| |
|
|
| T |
4177492 |
aaccactggtaaaattatttgtgagacttttcctaagttgaaatgtattgtgtttgataggccacaagttgtagagaacttatctggaagcaataatttg |
4177393 |
T |
|
| Q |
612 |
acatatgttggtggggacatgt |
633 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
4177392 |
acttatgttggtggggacatgt |
4177371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 415 - 585
Target Start/End: Original strand, 34343525 - 34343695
Alignment:
| Q |
415 |
tggctagtgattcaaaaatgattaatttggcaatgaaagattgtaatttggtgtttgaggggttggaatcaattgtggatgttggtggtggaaatggaac |
514 |
Q |
| |
|
||||||||||||| ||||| | |||||||| ||||| |||||| | ||||||||| ||| | || || |||||||||||||||||||||| |||||| |
|
|
| T |
34343525 |
tggctagtgattctcaaatggtgaatttggctttgaaaaattgtagtaaggtgtttgaagggattgattctattgtggatgttggtggtggaactggaac |
34343624 |
T |
|
| Q |
515 |
aactggtaagattatttgtgagacattttctaagttgaaatgtgttgtttttgatcgtccaaaggttgtag |
585 |
Q |
| |
|
|| | || ||||| |||||| | ||| ||||||||||||||||||||| ||||| |||| ||||||||| |
|
|
| T |
34343625 |
cacagctagaattatatgtgaggcttttcctaagttgaaatgtgttgtttatgatcttccacaggttgtag |
34343695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 468 - 568
Target Start/End: Original strand, 34330971 - 34331071
Alignment:
| Q |
468 |
tttgaggggttggaatcaattgtggatgttggtggtggaaatggaacaactggtaagattatttgtgagacattttctaagttgaaatgtgttgtttttg |
567 |
Q |
| |
|
||||||||| | ||||| ||||||||||||||||||||||||||||| || | ||| ||||| |||||| | ||| ||||| | |||||| ||||||||| |
|
|
| T |
34330971 |
tttgaggggatagaatctattgtggatgttggtggtggaaatggaacgacggctaaaattatatgtgaggcttttcctaaggtcaaatgtcttgtttttg |
34331070 |
T |
|
| Q |
568 |
a |
568 |
Q |
| |
|
| |
|
|
| T |
34331071 |
a |
34331071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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