View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20783_low_52 (Length: 319)
Name: NF20783_low_52
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_low_52 |
 | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 21)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 15 - 304
Target Start/End: Complemental strand, 11779654 - 11779365
Alignment:
| Q |
15 |
acttcacttgtgagtctttatttatggagtagttgtgatgcacttacatccttcccacttgatggtttccctgtgctccaaacacttgacttaagtgatt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11779654 |
acttcacttgtgagtctttatttatggagtagttgtgatgcacttacatccttcccacttgatggtttccctgtgctccaaacacttgacttaagtgatt |
11779555 |
T |
|
| Q |
115 |
gtaggagtctggattccatttatattttagaaacaccttcacctcagtcgtcgagcctccgacatcttgaaatcagatcccatgattcaattgaattgtt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
11779554 |
gtaggagtctggattccatttatattttagaaacaccttcacctcagtcgtcgagcctccgacatcttgaaatcagatcccatgatttaattgaattgtt |
11779455 |
T |
|
| Q |
215 |
taaagtcaagcttcggatgaactcgctcaccgctcttgagaagttgttcctgaatcaaggagtgttttcattttgtgaaggagtttgtct |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11779454 |
taaagtcaagcttcggatgaactcgctcactgctcttgagaagttgtttctgaatcaaggagtgttttcattttgtgaaagagtttgtct |
11779365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 15 - 304
Target Start/End: Original strand, 11771631 - 11771920
Alignment:
| Q |
15 |
acttcacttgtgagtctttatttatggagtagttgtgatgcacttacatccttcccacttgatggtttccctgtgctccaaacacttgacttaagtgatt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| || ||||| | || || || |
|
|
| T |
11771631 |
acttcacttgtgagtctttatttatggagtagttgtgatgcacttacatcctttccacttgatggtttccctgcgctcaaatcacttaccatagatggtt |
11771730 |
T |
|
| Q |
115 |
gtaggagtctggattccatttatattttagaaacaccttcacctcagtcgtcgagcctccgacatcttgaaatcagatcccatgattcaattgaattgtt |
214 |
Q |
| |
|
|||| ||||||||||||||| || ||||||||| ||||||||| ||| |||||||||| | ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11771731 |
gtagtagtctggattccattaatgttttagaaatgtcttcacctcggtcctcgagcctccaatatcttgagatcagatcccatgattcaattgaattgtt |
11771830 |
T |
|
| Q |
215 |
taaagtcaagcttcggatgaactcgctcaccgctcttgagaagttgttcctgaatcaaggagtgttttcattttgtgaaggagtttgtct |
304 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11771831 |
taaagtcaagcttcggatgaactcgcttaccgctcttgagaagttgtttctgaatcaaggagtgttttcattttgtgaaggagtttgtct |
11771920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 10091194 - 10091483
Alignment:
| Q |
18 |
tcacttgtgagtctttatttatggagtagttgtgatgcacttacatccttcccacttgatggtttccctgtgctccaaacacttgacttaagtgattgta |
117 |
Q |
| |
|
||||||||||| ||||||||| | ||| |||||||||||||||||||| ||||||||||||||||||| |||| || ||||| | || || ||||| |
|
|
| T |
10091194 |
tcacttgtgagactttatttaagtcatagctgtgatgcacttacatcctttccacttgatggtttccctgcgctcaaatcacttaccatagatggttgta |
10091293 |
T |
|
| Q |
118 |
ggagtctggattccatttatattttagaaacaccttcacctcagtcgtcgagcctccgacatcttgaaatcagatcccatgattcaattgaattgtttaa |
217 |
Q |
| |
|
| ||||||||||||||| || ||||||||| ||||||||| ||| |||||||||| | ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10091294 |
gtagtctggattccattaatgttttagaaatgtcttcacctcggtcctcgagcctccaatatcttgagatcagatcccatgattcaattgaattgtttaa |
10091393 |
T |
|
| Q |
218 |
agtcaagcttcggatgaactcgctcaccgctcttgagaagttgttcctgaa---tcaaggagtgttttcattttgtgaaggagtttgtct |
304 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||||||||| ||||| || ||||||||| ||||||||||||||||||||||| |
|
|
| T |
10091394 |
agtcaagcttcagatgaactcgctcaccgcccttgagaagttgtttctgaaatgtcgaggagtgttgtcattttgtgaaggagtttgtct |
10091483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 10198076 - 10198365
Alignment:
| Q |
18 |
tcacttgtgagtctttatttatggagtagttgtgatgcacttacatccttcccacttgatggtttccctgtgctccaaacacttgacttaagtgattgta |
117 |
Q |
| |
|
||||||||||| ||||||||| | ||| |||||||||||||||||||| ||||||||||||||||||| |||| || ||||| | || || ||||| |
|
|
| T |
10198076 |
tcacttgtgagactttatttaagtcatagctgtgatgcacttacatcctttccacttgatggtttccctgcgctcaaatcacttaccatagatggttgta |
10198175 |
T |
|
| Q |
118 |
ggagtctggattccatttatattttagaaacaccttcacctcagtcgtcgagcctccgacatcttgaaatcagatcccatgattcaattgaattgtttaa |
217 |
Q |
| |
|
| ||||||||||||||| || ||||||||| ||||||||| ||| |||||||||| | ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10198176 |
gtagtctggattccattaatgttttagaaatgtcttcacctcggtcctcgagcctccaatatcttgagatcagatcccatgattcaattgaattgtttaa |
10198275 |
T |
|
| Q |
218 |
agtcaagcttcggatgaactcgctcaccgctcttgagaagttgttcctgaa---tcaaggagtgttttcattttgtgaaggagtttgtct |
304 |
Q |
| |
|
||||||||||| ||||||| |||||||||| |||||||||||||| ||||| || |||| |||| ||||||||||||||||||||||| |
|
|
| T |
10198276 |
agtcaagcttcagatgaacgcgctcaccgcccttgagaagttgtttctgaaatgtcgaggactgttgtcattttgtgaaggagtttgtct |
10198365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 10431710 - 10431468
Alignment:
| Q |
18 |
tcacttgtgagtctttatttatggagtagttgtgatgcacttacatccttcccacttgatggtttccctgtgctccaaacacttgacttaagtgattgta |
117 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||| ||||||||||||| ||||| ||||||||||||| |||||| ||||||| || | |||| | |
|
|
| T |
10431710 |
tcacttgtcagtctttatttatggagcagttgtgattcacttacatcctttccactcgatggtttccctgccctccaattacttgacatatttaattgca |
10431611 |
T |
|
| Q |
118 |
ggagtctggattccatttatattttagaaacaccttcacctcagtcgtcgagcctccgacatcttgaaatcagatcccatgattcaattgaattgtttaa |
217 |
Q |
| |
|
| |||||||||||||||||||||| ||||| ||||||||| ||||||||||||| | ||| | |||||||||||| ||||||||||||| ||| | |
|
|
| T |
10431610 |
gaagtctggattccatttatatttcagaaaggtcttcacctcggtcgtcgagcctcgaatcactttatatcagatcccattattcaattgaattatttga |
10431511 |
T |
|
| Q |
218 |
agtcaagcttcggatgaactcgctcaccgctcttgagaagttg |
260 |
Q |
| |
|
|||||||||| |||| || ||||||||||||||| |||||| |
|
|
| T |
10431510 |
agtcaagcttaagatggacatgctcaccgctcttgaaaagttg |
10431468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 9841258 - 9841493
Alignment:
| Q |
18 |
tcacttgtgagtctttatttatggagtagttgtgatgcacttacatccttcccacttgatggtttccctgtgctccaaacacttgacttaagtgattgta |
117 |
Q |
| |
|
||||||||||||||| | |||||| | || |||||| ||||||||||||||||||||||||||||||||| ||||||||||||| | || |||||||| |
|
|
| T |
9841258 |
tcacttgtgagtcttcagttatggtggagctgtgatacacttacatccttcccacttgatggtttccctgcgctccaaacacttaccatacttgattgta |
9841357 |
T |
|
| Q |
118 |
ggagtctggattccatttatattttagaaacaccttcacctcagtcgtcgagcctccgacatcttgaaatcagatcccatgattcaattgaattgtttaa |
217 |
Q |
| |
|
||||||| |||||||||||||||| ||||| ||||||||| ||||||||||||| | ||| |||| ||||||||||||||||||||| ||| | |
|
|
| T |
9841358 |
ggagtctagattccatttatatttcagaaaggtcttcacctctgtcgtcgagcctcgaatcacttataatcgaatcccatgattcaattgaattatttga |
9841457 |
T |
|
| Q |
218 |
agtcaagcttcggatgaactcgctcaccgctcttga |
253 |
Q |
| |
|
|||||||||| |||| || |||||| |||||||| |
|
|
| T |
9841458 |
agtcaagcttaagatggacatgctcacagctcttga |
9841493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 10034403 - 10034638
Alignment:
| Q |
18 |
tcacttgtgagtctttatttatggagtagttgtgatgcacttacatccttcccacttgatggtttccctgtgctccaaacacttgacttaagtgattgta |
117 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| | || | |||||| |
|
|
| T |
10034403 |
tcacttgtgagtctttatttaattcatagttgtgatgcacttacatcctttccacttgatggtttccctgtcctccaaacacttcagatatggaattgta |
10034502 |
T |
|
| Q |
118 |
ggagtctggattccatttatattttagaaacaccttcacctcagtcgtcgagcctccgacatcttgaaatcagatcccatgattcaattgaattgtttaa |
217 |
Q |
| |
|
||||||||| |||||||||||||| ||||| ||||||||| ||||||||||||| | ||| | ||| ||||||||||||||||||||| ||| | |
|
|
| T |
10034503 |
ggagtctggtttccatttatatttcagaaaggtcttcacctcggtcgtcgagcctcgaatcacttcatatcgaatcccatgattcaattgaattatttga |
10034602 |
T |
|
| Q |
218 |
agtcaagcttcggatgaactcgctcaccgctcttga |
253 |
Q |
| |
|
|||||||||| |||| || |||||| |||||||| |
|
|
| T |
10034603 |
agtcaagcttaagatggacatgctcacagctcttga |
10034638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 10129325 - 10129531
Alignment:
| Q |
18 |
tcacttgtgagtctttatttatggagtagttgtgatgcacttacatccttcccacttgatggtttccctgtgctccaaacacttgacttaagtgattgta |
117 |
Q |
| |
|
|||||||||||| || ||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| | || | |||||| |
|
|
| T |
10129325 |
tcacttgtgagtattgatttacggagtagttgtgatgcacttacatcctttccacttgatggtttccctgcgctccaaacacttaccatacataattgta |
10129424 |
T |
|
| Q |
118 |
ggagtctggattccatttatattttagaaacaccttcacctcagtcgtcgagcctccgacatcttgaaatcagatcccatgattcaattgaattgtttaa |
217 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||| |||||| |||| | ||| | |||| ||||||||||||||||||||| ||| | |
|
|
| T |
10129425 |
ggagtctggattccatttatatttcagaaaggtcttcacctcggtcgtc---cctcaaatcactttatatcatatcccatgattcaattgaattatttga |
10129521 |
T |
|
| Q |
218 |
agtcaagctt |
227 |
Q |
| |
|
|||||||||| |
|
|
| T |
10129522 |
agtcaagctt |
10129531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 45 - 260
Target Start/End: Original strand, 10665893 - 10666108
Alignment:
| Q |
45 |
agttgtgatgcacttacatccttcccacttgatggtttccctgtgctccaaacacttgacttaagtgattgtaggagtctggattccatttatattttag |
144 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| || ||||||||||||||| |||||||| |||||||| |
|
|
| T |
10665893 |
agttgtgatgcacttacatcctttccacttgatggtttccctgcgctccaaacactttggatacagaattgtaggagtctggtttccatttgtattttag |
10665992 |
T |
|
| Q |
145 |
aaacaccttcacctcagtcgtcgagcctccgacatcttgaaatcagatcccatgattcaattgaattgtttaaagtcaagcttcggatgaactcgctcac |
244 |
Q |
| |
|
||| |||||| |||||||||||| ||| | | |||| |||||||||||||||||||||||||| ||| ||||||||||| |||| || |||||| |
|
|
| T |
10665993 |
aaagtccttcatgtcagtcgtcgagactcgaagaacttgtgatcagatcccatgattcaattgaattatttgaagtcaagcttaagatggacatgctcac |
10666092 |
T |
|
| Q |
245 |
cgctcttgagaagttg |
260 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
10666093 |
tgctcttgaaaagttg |
10666108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 21 - 253
Target Start/End: Original strand, 10531064 - 10531296
Alignment:
| Q |
21 |
cttgtgagtctttatttatggagtagttgtgatgcacttacatccttcccacttgatggtttccctgtgctccaaacacttgacttaagtgattgtagga |
120 |
Q |
| |
|
|||| ||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||| || |||| || | || |||||||| |
|
|
| T |
10531064 |
cttgagagtcttattttatggagtagctgtgatgcacttacatccttccaacttgatggtttccctgcactccgaatactttacatttgtttttgtagga |
10531163 |
T |
|
| Q |
121 |
gtctggattccatttatattttagaaacaccttcacctcagtcgtcgagcctccgacatcttgaaatcagatcccatgattcaattgaattgtttaaagt |
220 |
Q |
| |
|
|| ||||||| ||| ||||| ||||| ||| ||| || ||| || ||||||||| ||| |||||| ||||||||||||||||| |||| ||||||| |
|
|
| T |
10531164 |
gtatggattcggtttttatttcagaaagtcctccacgtcggtcatcaagcctccgatcacttaaaatcaaatcccatgattcaattggattgcttaaagt |
10531263 |
T |
|
| Q |
221 |
caagcttcggatgaactcgctcaccgctcttga |
253 |
Q |
| |
|
||||||||||||| || ||||||| |||||||| |
|
|
| T |
10531264 |
caagcttcggatggacacgctcactgctcttga |
10531296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 10519885 - 10520120
Alignment:
| Q |
18 |
tcacttgtgagtctttatttatggagtagttgtgatgcacttacatccttcccacttgatggtttccctgtgctccaaacacttgacttaagtgattgta |
117 |
Q |
| |
|
||||||||||||||| | || | |||| |||||| ||||||||||||| ||||| ||||||||||||| ||||||||||||| | || |||| || | |
|
|
| T |
10519885 |
tcacttgtgagtcttaagttctatcgtagctgtgatacacttacatcctttccactcgatggtttccctgcgctccaaacacttaccatatgtgagtgca |
10519984 |
T |
|
| Q |
118 |
ggagtctggattccatttatattttagaaacaccttcacctcagtcgtcgagcctccgacatcttgaaatcagatcccatgattcaattgaattgtttaa |
217 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||| ||||||||||||| | ||||| |||| ||||| ||||||||||||||| ||| | |
|
|
| T |
10519985 |
ggagtctggattccatttatatttcagaaaggtcttcacctcggtcgtcgagcctcgaatcacttgagatcatatcccctgattcaattgaattatttga |
10520084 |
T |
|
| Q |
218 |
agtcaagcttcggatgaactcgctcaccgctcttga |
253 |
Q |
| |
|
|||||||||| |||| || |||||| |||||||| |
|
|
| T |
10520085 |
agtcaagcttaagatggacatgctcacagctcttga |
10520120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 43 - 253
Target Start/End: Original strand, 9852164 - 9852374
Alignment:
| Q |
43 |
gtagttgtgatgcacttacatccttcccacttgatggtttccctgtgctccaaacacttgacttaagtgattgtaggagtctggattccatttatatttt |
142 |
Q |
| |
|
|||| |||||| |||||| |||||| ||||| |||||||||||||||||||||||||||||| | |||||| || ||||||||||||||||||||||| |
|
|
| T |
9852164 |
gtagctgtgattcacttaaatcctttccactcgatggtttccctgtgctccaaacacttgacattgatgattggagaagtctggattccatttatatttt |
9852263 |
T |
|
| Q |
143 |
agaaacaccttcacctcagtcgtcgagcctccgacatcttgaaatcagatcccatgattcaattgaattgtttaaagtcaagcttcggatgaactcgctc |
242 |
Q |
| |
|
||||| ||||||||| |||||| ||||||| | ||| |||| ||||||| ||||||||||||| ||| ||||||||||| |||| || |||| |
|
|
| T |
9852264 |
agaaaggtcttcacctcggtcgtcaagcctccaatcacttcggatcaaatcccataattcaattgaattatttgaagtcaagcttaagatggacatgctc |
9852363 |
T |
|
| Q |
243 |
accgctcttga |
253 |
Q |
| |
|
||||||||||| |
|
|
| T |
9852364 |
accgctcttga |
9852374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 55 - 253
Target Start/End: Complemental strand, 10361433 - 10361235
Alignment:
| Q |
55 |
cacttacatccttcccacttgatggtttccctgtgctccaaacacttgacttaagtgattgtaggagtctggattccatttatattttagaaacaccttc |
154 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||| ||||| ||||||| | || ||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
10361433 |
cacttacatcctttccactcgatggtttccctgcgctccgaacacttaccatacgtgattgtaggagtctggattccatttatatttcagaaaggtcttc |
10361334 |
T |
|
| Q |
155 |
acctcagtcgtcgagcctccgacatcttgaaatcagatcccatgattcaattgaattgtttaaagtcaagcttcggatgaactcgctcaccgctcttga |
253 |
Q |
| |
|
||||| ||||||||||||| | ||| ||||| ||||||||||||||||||||| ||| ||||||||||| |||| || |||| |||||||||| |
|
|
| T |
10361333 |
acctcggtcgtcgagcctcgaatcacttataatcatatcccatgattcaattgaattatttgaagtcaagcttaagatggacacgcttgccgctcttga |
10361235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 10263101 - 10263345
Alignment:
| Q |
18 |
tcacttgtgagtctttatttatggagtagttgtgatgcacttacatccttcccacttgatggtttccctgtgctccaaacacttgacttaagtgattgta |
117 |
Q |
| |
|
||||||||||||||| | ||| |||| |||||| ||||||||||||| ||||| ||||||||||||| ||||||||||||||| || | | |||| |
|
|
| T |
10263101 |
tcacttgtgagtcttgagttaaatcgtagctgtgattcacttacatcctttccactcgatggtttccctgccctccaaacacttgacatatataagtgta |
10263200 |
T |
|
| Q |
118 |
ggagtctggattccatttatattttagaaacaccttcacctcagtcgtcgagcctccgacatcttgaaatcagatcccatgattcaattgaattgtttaa |
217 |
Q |
| |
|
| |||||||||||||||||||||||||||| ||||||||| ||||||||||||| | ||| |||| ||||||||||||||||||||| ||| | |
|
|
| T |
10263201 |
gaagtctggattccatttatattttagaaaggtcttcacctcggtcgtcgagcctcgaatcacttactatcaaatcccatgattcaattgaattatttga |
10263300 |
T |
|
| Q |
218 |
agtcaagcttcggatgaactcgctcaccgctcttgagaagttgtt |
262 |
Q |
| |
|
|||||||||| |||| | ||||||||||||||| | |||||| |
|
|
| T |
10263301 |
agtcaagcttaagatggaaatgctcaccgctcttgaaaggttgtt |
10263345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 21 - 253
Target Start/End: Original strand, 10679863 - 10680095
Alignment:
| Q |
21 |
cttgtgagtctttatttatggagtagttgtgatgcacttacatccttcccacttgatggtttccctgtgctccaaacacttgacttaagtgattgtagga |
120 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||| || |||| || | || |||||||| |
|
|
| T |
10679863 |
cttgtgagtcttattttatggagtagctgtgatgcacttacatccttccaacttgatggtttccctgcactccgaatactttacatttgtttttgtagga |
10679962 |
T |
|
| Q |
121 |
gtctggattccatttatattttagaaacaccttcacctcagtcgtcgagcctccgacatcttgaaatcagatcccatgattcaattgaattgtttaaagt |
220 |
Q |
| |
|
|| ||||||| ||| ||||| ||||| || |||| ||| |||| ||||||| | ||| |||||| ||| ||||||||||||| | || ||||||| |
|
|
| T |
10679963 |
gtatggattcagtttttatttcagaaagtccatcacatcaatcgttaagcctccaatcacttaaaatcaaatcacatgattcaattggactgcttaaagt |
10680062 |
T |
|
| Q |
221 |
caagcttcggatgaactcgctcaccgctcttga |
253 |
Q |
| |
|
||||||||||||| || ||||||| |||||||| |
|
|
| T |
10680063 |
caagcttcggatggacacgctcactgctcttga |
10680095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 21 - 253
Target Start/End: Original strand, 10502985 - 10503217
Alignment:
| Q |
21 |
cttgtgagtctttatttatggagtagttgtgatgcacttacatccttcccacttgatggtttccctgtgctccaaacacttgacttaagtgattgtagga |
120 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||| ||| |||||||| ||||||||||||||||||| ||||||| |||| || | ||| | ||||||| |
|
|
| T |
10502985 |
cttgtgagtcttgatttatggagtagctgtgatggactaacatcctttccacttgatggtttccctgcactccaaagacttaacattagtaactgtagga |
10503084 |
T |
|
| Q |
121 |
gtctggattccatttatattttagaaacaccttcacctcagtcgtcgagcctccgacatcttgaaatcagatcccatgattcaattgaattgtttaaagt |
220 |
Q |
| |
|
| |||||||||||| || |||| ||| |||| || || | |||||||||| | ||| | ||| ||||||||||||| |||||| ||| |||| |
|
|
| T |
10503085 |
atttggattccatttttactttaaaaagtcctttacaccaatattcgagcctccaatcacttcatatccaatcccatgattcagttgaatcatttgaagt |
10503184 |
T |
|
| Q |
221 |
caagcttcggatgaactcgctcaccgctcttga |
253 |
Q |
| |
|
|||||||| ||||||| ||||||| |||||||| |
|
|
| T |
10503185 |
caagcttcagatgaacacgctcacggctcttga |
10503217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 21 - 253
Target Start/End: Complemental strand, 13853127 - 13852895
Alignment:
| Q |
21 |
cttgtgagtctttatttatggagtagttgtgatgcacttacatccttcccacttgatggtttccctgtgctccaaacacttgacttaagtgattgtagga |
120 |
Q |
| |
|
|||| ||||||| |||| ||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||| |||| ||||||| ||||||| |
|
|
| T |
13853127 |
cttgcgagtcttactttacggagtagctgtgatgcacttacatccttccaacttgatggtttccctgcactccaaagacttcggataagtgagtgtagga |
13853028 |
T |
|
| Q |
121 |
gtctggattccatttatattttagaaacaccttcacctcagtcgtcgagcctccgacatcttgaaatcagatcccatgattcaattgaattgtttaaagt |
220 |
Q |
| |
|
||||||||||||| |||||||||||| ||| || || |||| || |||| | |||| ||||| ||||||||| ||||||| || ||||||| |
|
|
| T |
13853027 |
atctggattccattaatattttagaaagtcctccaagtcgaccgtcaagactccaaacacttgtaatcaaatcccatgactcaattggatcacttaaagt |
13852928 |
T |
|
| Q |
221 |
caagcttcggatgaactcgctcaccgctcttga |
253 |
Q |
| |
|
|||||||||||| || |||| ||||||||||| |
|
|
| T |
13852927 |
gaagcttcggatggacacgcttaccgctcttga |
13852895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 10373511 - 10373276
Alignment:
| Q |
18 |
tcacttgtgagtctttatttatggagtagttgtgatgcacttacatccttcccacttgatggtttccctgtgctccaaacacttgacttaagtgattgta |
117 |
Q |
| |
|
||||||||| | |||||||||| |||| |||||| |||||| |||||| |||||||||||||||||||| |||||||||||| || |||||| |
|
|
| T |
10373511 |
tcacttgtgtggctttatttatatcgtagctgtgattcacttatatcctttccacttgatggtttccctgtcctccaaacacttatgatactgaattgta |
10373412 |
T |
|
| Q |
118 |
ggagtctggattccatttatattttagaaacaccttcacctcagtcgtcgagcctccgacatcttgaaatcagatcccatgattcaattgaattgtttaa |
217 |
Q |
| |
|
||| |||||||||||||| ||||| ||||| |||||||||| ||||||||||||| | ||| | ||| ||||||| |||||||||||| ||| | |
|
|
| T |
10373411 |
ggaatctggattccatttgtatttcagaaagtccttcacctcggtcgtcgagcctcgaatcacttcagatcttctcccatgcttcaattgaattatttga |
10373312 |
T |
|
| Q |
218 |
agtcaagcttcggatgaactcgctcaccgctcttga |
253 |
Q |
| |
|
|||||||||| |||| || ||||||||||||||| |
|
|
| T |
10373311 |
agtcaagcttaagatggacatgctcaccgctcttga |
10373276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 88 - 227
Target Start/End: Original strand, 10085731 - 10085870
Alignment:
| Q |
88 |
tgctccaaacacttgacttaagtgattgtaggagtctggattccatttatattttagaaacaccttcacctcagtcgtcgagcctccgacatcttgaaat |
187 |
Q |
| |
|
||||||||||||||||| || ||||||||||| || |||||||||||| ||||||||||| |||||| || |||||| ||||||| | ||| |||| |
|
|
| T |
10085731 |
tgctccaaacacttgacatacgtgattgtaggtgtttggattccatttttattttagaaagtccttcatgtcggtcgtcaagcctccagccacttaaaat |
10085830 |
T |
|
| Q |
188 |
cagatcccatgattcaattgaattgtttaaagtcaagctt |
227 |
Q |
| |
|
|| ||||||| | |||||| ||||||||||||||||||| |
|
|
| T |
10085831 |
caaatcccataaagcaattggattgtttaaagtcaagctt |
10085870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 227
Target Start/End: Original strand, 10192651 - 10192790
Alignment:
| Q |
88 |
tgctccaaacacttgacttaagtgattgtaggagtctggattccatttatattttagaaacaccttcacctcagtcgtcgagcctcc-gacatcttgaaa |
186 |
Q |
| |
|
||||||||||||||||| || ||||||||||| || |||||||||||| ||||||||||| |||||| || |||||| ||||||| | || ||| ||| |
|
|
| T |
10192651 |
tgctccaaacacttgacatacgtgattgtaggtgtttggattccatttttattttagaaagtccttcatgtcggtcgtcaagcctccagtca-cttaaaa |
10192749 |
T |
|
| Q |
187 |
tcagatcccatgattcaattgaattgtttaaagtcaagctt |
227 |
Q |
| |
|
||| ||||||| | |||||| ||||||||||||||||||| |
|
|
| T |
10192750 |
tcaaatcccataaagcaattggattgtttaaagtcaagctt |
10192790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 10583011 - 10583094
Alignment:
| Q |
18 |
tcacttgtgagtctttatttatggagtagttgtgatgcacttacatccttcccacttgatggtttccctgtgctccaaacactt |
101 |
Q |
| |
|
||||||||||||||||| || | |||| |||||| ||||||||||||| ||||||||||||||||||| ||||| ||||||| |
|
|
| T |
10583011 |
tcacttgtgagtctttagttctatcgtagctgtgattcacttacatcctttccacttgatggtttccctgcgctccgaacactt |
10583094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 42 - 253
Target Start/End: Original strand, 11487453 - 11487664
Alignment:
| Q |
42 |
agtagttgtgatgcacttacatccttcccacttgatggtttccctgtgctccaaacacttgacttaagtgattgtaggagtctggattccatttatattt |
141 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||||| |||||||| ||| | || |||||||||| ||||||||||||||| ||||| |
|
|
| T |
11487453 |
agtagctgtgatgcacttacatcctttccacttgatggtttccctgcgctccaaagactaaaactatatgattgtaggtgtctggattccatttttattt |
11487552 |
T |
|
| Q |
142 |
tagaaacaccttcacctcagtcgtcgagcctccgacatcttgaaatcagatcccatgattcaattgaattgtttaaagtcaagcttcggatgaactcgct |
241 |
Q |
| |
|
|||||| |||||| | |||||| ||||||||| ||||||||||| ||||||||| ||||||| || || ||||||| ||||||||| || ||| |
|
|
| T |
11487553 |
tagaaagtccttcatgttggtcgtcaagcctccgatctcttgaaatcaaatcccatgactcaattggatcacttcaagtcaaacttcggatggacatgct |
11487652 |
T |
|
| Q |
242 |
caccgctcttga |
253 |
Q |
| |
|
||| |||||||| |
|
|
| T |
11487653 |
cactgctcttga |
11487664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 42 - 233
Target Start/End: Complemental strand, 44955304 - 44955113
Alignment:
| Q |
42 |
agtagttgtgatgcacttacatccttcccacttgatggtttccctgtgctccaaacacttgacttaagtgattgtaggagtctggattccatttatattt |
141 |
Q |
| |
|
||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||| |||| || | |||| |||||||||||||||||| |||| |||| |
|
|
| T |
44955304 |
agtagctgtgatgcacttaaatcattcccacttgatggtttccctgtgctccaaagacttaacattagtggttgtaggagtctggattcaattttcattt |
44955205 |
T |
|
| Q |
142 |
tagaaacaccttcacctcagtcgtcgagcctccgacatcttgaaatcagatcccatgattcaattgaattgtttaaagtcaagcttcggatg |
233 |
Q |
| |
|
| |||| |||||||||| | |||| ||||| || ||| ||||| ||||||||| | ||||||| |||||||||| ||||||||| |
|
|
| T |
44955204 |
tggaaagtccttcacctcggccgtcaagcctttgatcacttacaatcacatcccatgactttattgaatcacttaaagtcaatcttcggatg |
44955113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 44 - 173
Target Start/End: Complemental strand, 55245 - 55116
Alignment:
| Q |
44 |
tagttgtgatgcacttacatccttcccacttgatggtttccctgtgctccaaacacttgacttaagtgattgtaggagtctggattccatttatatttta |
143 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||| |||||||| ||||| | |
|
|
| T |
55245 |
tagttgtgattcacttacatcctttccacttgatggtttccctgccctccaaacacttgacataagtagatgtaggagtctggtttccatttgtatttca |
55146 |
T |
|
| Q |
144 |
gaaacaccttcacctcagtcgtcgagcctc |
173 |
Q |
| |
|
|||| |||||||||| ||||||||||||| |
|
|
| T |
55145 |
gaaagtccttcacctcggtcgtcgagcctc |
55116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 111 - 253
Target Start/End: Original strand, 26909381 - 26909523
Alignment:
| Q |
111 |
gattgtaggagtctggattccatttatattttagaaacaccttcacctcagtcgtcgagcctccgacatcttgaaatcagatcccatgattcaattgaat |
210 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||| ||||||| || | |||| ||||| | ||| |||||| |||||||||||||||||||| |
|
|
| T |
26909381 |
gattgtaggagtgtggattccatttatatttcagaaactccttcacatcggccgtcaagccttgaatcacttaaaatcaaatcccatgattcaattgaat |
26909480 |
T |
|
| Q |
211 |
tgtttaaagtcaagcttcggatgaactcgctcaccgctcttga |
253 |
Q |
| |
|
| |||||||| |||||||||||| || ||||||| | |||||| |
|
|
| T |
26909481 |
tatttaaagtgaagcttcggatggacacgctcacagatcttga |
26909523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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