View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_low_55 (Length: 316)
Name: NF20783_low_55
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_low_55 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 11627324 - 11627009
Alignment:
| Q |
1 |
ccatttcccgaacttttaaataggagctcccgtactgcaatggtgacaaacttctgctaggtaaggccatcatatctgtaacatgatctttagtagtgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11627324 |
ccatttcccgaacttttaaataggagctcccgtactgcaatggtgacaaacttctgctaggtaaggccatcatatctgtaacatgatctttagtagtgaa |
11627225 |
T |
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| Q |
101 |
ttggataattgcaaatgctgttcgaatacgggctttgccttctcttatctttatagcaaccacacttccttcaccagtatactgctctacaaatctctta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11627224 |
ttggataattgcaaatgctgttcgaatacgggctttgccttctcttatctttatagcaaccacacttccttcaccagtatactgctctacaaatctctta |
11627125 |
T |
|
| Q |
201 |
acatcaggcacggtcacataatgagggaatccatacaactcaattgttttacttttaaccatcttcaatgccaactcttttgattttcctaaataggata |
300 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11627124 |
acatcaggcacagtcacataatgagggaatccatacaactcaattgttttacttttaaccatcttcaatgccaactcttttgattttcctaaataggata |
11627025 |
T |
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| Q |
301 |
ggagaagaaaataatt |
316 |
Q |
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|||||||||||||||| |
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| T |
11627024 |
ggagaagaaaataatt |
11627009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 11686698 - 11686983
Alignment:
| Q |
1 |
ccatttcccgaacttttaaataggagctcccgtactgcaatggtgacaaacttctgctaggtaaggccatcatatctgtaacatgatctttagtagtgaa |
100 |
Q |
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| T |
11686698 |
ccatttcccgaacttttaaatcgtagcccccataccgccatgttggcaaacttatgttagacaaggtcatcatatacgtagcatgtttagcagtggtgaa |
11686797 |
T |
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| Q |
101 |
ttggataattgcaaatgctgttcgaatacgggctttgccttctcttatctttatagcaaccacacttccttcaccagtatactgctctacaaatctctta |
200 |
Q |
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||| ||||||||||||||| |||||| | || ||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| || ||||| |
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| T |
11686798 |
ttgaataattgcaaatgctcttcgaacatggcctttgccttctcttatcttcatagcaaccacacttccttcaccggtatagtgctctacgaaactcttt |
11686897 |
T |
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| Q |
201 |
acatcaggcacggtcacataatgagggaatccatacaactcaattgttttacttttaaccatcttcaatgccaactcttttgattt |
286 |
Q |
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| T |
11686898 |
acatcatatacagtctcataacaagggaatccagataactcaattgttttacttttacccatcctcaatgccaactcttttgattt |
11686983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 11690710 - 11690999
Alignment:
| Q |
1 |
ccatttcccgaacttttaaataggagctcccgtactgcaatggtgacaaacttctgctaggtaaggccatcatatctgtaacatgatctttagtagtgaa |
100 |
Q |
| |
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||||||||||||||||||||| | ||| ||||||| || ||| || ||||||| || ||| |||| |||||||| |||| |||| | ||||||||| |
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| T |
11690710 |
ccatttcccgaacttttaaatcgtagcccccgtaccgccatgttggcaaacttatgttagacaaggtcatcatatatgtagcatgtttagcagtagtgaa |
11690809 |
T |
|
| Q |
101 |
ttggataattgcaaatgctgttcgaatacgggctttgccttctcttatctttatagcaaccacacttccttcaccagtatactgctctacaaatctctta |
200 |
Q |
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||| ||||||||||||| | |||||| | || |||||||||| |||||||| ||||||||||||||||||||||| ||||| |||||||| || ||||| |
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| T |
11690810 |
ttgaataattgcaaatgttcttcgaacatggcctttgccttcccttatcttcatagcaaccacacttccttcaccggtatagtgctctacgaaactcttt |
11690909 |
T |
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| Q |
201 |
acatcaggcacggtcacataatgagggaatccatacaactcaattgttttacttttaaccatcttcaatgccaactcttttgattttcct |
290 |
Q |
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| T |
11690910 |
acatcatatacagtctcataacaagggaatccagataactcaattgttttacttttacccatcctcaatgctaactcttttgattctcct |
11690999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 52 - 311
Target Start/End: Complemental strand, 11635061 - 11634801
Alignment:
| Q |
52 |
ttctgctaggtaaggccatcatatctgtaacatgatctttagtagtgaattggataattgcaaatgctgttcgaatacgggctttgccttctcttatctt |
151 |
Q |
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|||||||||||||||||||||| |||| |||| | | ||||||||| || ||||||||||||||| || || ||| | |||||| |||| ||||| |
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| T |
11635061 |
ttctgctaggtaaggccatcatgaatgtagcatgttttgcagtagtgaactgaataattgcaaatgctcttttaacccggccattgcctactctaatctt |
11634962 |
T |
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| Q |
152 |
tatagcaaccacacttccttcaccagtatactgctctacaaatctcttaacatcaggcacggtcacataatgagggaatccatacaactcaattgtttta |
251 |
Q |
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| T |
11634961 |
catagcaaccacacttccttcaccggtataatgctctacaaatatctttacttgagacacgttcacaaaagaagggaatccatacaactcaattgtttta |
11634862 |
T |
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| Q |
252 |
cttttaaccatcttcaatgccaac-tcttttgattttcctaaataggataggagaagaaaa |
311 |
Q |
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|||||| |||| |||| ||| ||| | |||| | |||||| |||||||||| ||||||||| |
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| T |
11634861 |
cttttacccatgttcagtgctaacttatttttactttcctgaataggatagcagaagaaaa |
11634801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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