View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_low_59 (Length: 310)
Name: NF20783_low_59
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_low_59 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 9 - 292
Target Start/End: Complemental strand, 3063977 - 3063695
Alignment:
| Q |
9 |
agcagaagaagaggaagcccgtcgattagcagaagaggctcttgctnnnnnnnnnngcagaagaagaggaagcctgtcgattagcaaaagaggctcttgc |
108 |
Q |
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| T |
3063977 |
agcagaagaagaggaagcccgtcgattagcagaagaggcttttgctaaaaagaaa-gcagaagaagaggaagcccgtcgattagcaaaagaagctcttgc |
3063879 |
T |
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| Q |
109 |
tcnnnnnnnnctgcagtcccgcaaagcaaaagaggcagcagaaaagactcttactctaaattcactctgggcattggctgatgcatttcagcgtcgttcc |
208 |
Q |
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| T |
3063878 |
tcaaaaaaaactgcaggcccgcaaagcaaaagaggcagcagaaaagactcttactctaaattcactctgggcattggctgatgcatttcagcgtcgttcc |
3063779 |
T |
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| Q |
209 |
ttcccagacatgactagagaaacactttttcgaaaacttgttaaacttaacccagccgtaggttttcttaaaaattgctctagg |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3063778 |
ttcccagacatgactagagaaacactttttcgaaaacttgttaaacttaacccagccgtaggttttcttaaaatttgctctagg |
3063695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 3064031 - 3063932
Alignment:
| Q |
9 |
agcagaagaagaggaagcccgtcgattagcagaagaggctcttgctnnnnnnnnnngcagaagaagaggaagcctgtcgattagcaaaagaggctcttgc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||| |||| |
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| T |
3064031 |
agcagaagaagaggaagcccgtcgattagcagaagaggctcttgct-aaaaaaaaagcagaagaagaggaagcccgtcgattagcagaagaggcttttgc |
3063933 |
T |
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