View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20783_low_6 (Length: 618)
Name: NF20783_low_6
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 267 - 599
Target Start/End: Original strand, 28738822 - 28739161
Alignment:
| Q |
267 |
gtaatggtgtttgtagtgagcaagggaaaagagaattccaatggttacaaatgcattagtgatgtgacaaatgatgaaataatcggtagatagttgtta- |
365 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28738822 |
gtaatggtgtttgcagtgagcaagggaaaagagaattccaatggttacaaatgcattagtaatgtgacaaatgatgaaataatcggtagatagttgttat |
28738921 |
T |
|
| Q |
366 |
-atagcacaaaacaatctgtagatgaaataaaagaaataattgtgctgagtgtaacaccaaaacgctctcaaattgctgatgtcaaaagtttggccgaaa |
464 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28738922 |
aatagcacaaaacaacctgtagatgaaataaaagaaataattgtgctgagtgtaacaccaaaacgctctcaaattgctcatgtcaaaagtttggccgaaa |
28739021 |
T |
|
| Q |
465 |
ttttgcaaaactttgctaaagaaaaagatctgtaagagaaagaacatagagttgcaaagaatcc-----actaaaaatcatagtttcaggaaattgtttt |
559 |
Q |
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||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
28739022 |
ttttgcaaaactttgctaaagaaaaagatttgtaagagagagaacacagagttgcaaagaatccactaaactaaaaatcatagtttcaggaaattgtttt |
28739121 |
T |
|
| Q |
560 |
caactaaaggacacactactcccattgttgcaaccaaaac |
599 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
28739122 |
caactaaaggacacactactcccattattgcaaccaaaac |
28739161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 267 - 599
Target Start/End: Original strand, 28718511 - 28718844
Alignment:
| Q |
267 |
gtaatggtgtttgtagtgagcaagggaaaagagaattccaatggttacaaatgcattagtgatgtgacaaatgatgaaataatcggtagatagttgttaa |
366 |
Q |
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||||||||||||| ||||||||| ||||||||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
28718511 |
gtaatggtgtttgcagtgagcaattgaaaagagaattctaatggctacaaatgcatcagtgatgtgaccaatgatgaaataatcggtagacagttgttaa |
28718610 |
T |
|
| Q |
367 |
tagcacaaaacaatctgtagatgaaataaaagaaataattgtgctgagtgtaacaccaaaacgctctcaaattgctgatgtcaaaagtttggccgaaatt |
466 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||| || |||| ||||||||||||||||||| ||||||| |
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|
| T |
28718611 |
tagcacaaaacaatctgtagatgaaataaacgaaataattgtgccgagcgtaacaccaaaacgttcacaaaatgctgatgtcaaaagtttgtacgaaatt |
28718710 |
T |
|
| Q |
467 |
ttgcaaaactttgctaaagaaaaagatctgtaagagaaagaacataga-gttgcaaagaatccactaaaaatcatagtttcaggaaattgttttcaacta |
565 |
Q |
| |
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|||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||| | | |||||||||||| |||||||| |
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|
| T |
28718711 |
ttgcaaaaatttgctaaagaaaaagattcgtaagagaaagaacatagaggttgcaaagaatctactaaaaatcacaatgtcaggaaattgtattcaacta |
28718810 |
T |
|
| Q |
566 |
aaggacacactactcccattgttgcaaccaaaac |
599 |
Q |
| |
|
||| | | ||||||||| ||||| |||||||||| |
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|
| T |
28718811 |
aagtataaactactcccgttgtttcaaccaaaac |
28718844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 44 - 273
Target Start/End: Original strand, 28742319 - 28742548
Alignment:
| Q |
44 |
gttgcaggaaatacacatagcaatatagtaagagagaacttgcctgcagaacatcaccaatattaacagcaagagcctaaggtattggtggtacatcaat |
143 |
Q |
| |
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||||||||||||| |||| |||| ||||||| |||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||| |
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|
| T |
28742319 |
gttgcaggaaatagacattgcaaaatagtaatagagaacttgcctgcagaacatcaccaatattaataacaagagcctcaggtattggtggtacatcaat |
28742418 |
T |
|
| Q |
144 |
ccacttttccttgtgaagaacttgaaggccaccaaaatggtcttgaagaagcttggcgaggaaactactatcagaatgtttggcggttcccatcgttaaa |
243 |
Q |
| |
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||||||| ||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28742419 |
ccactttcccttgtgaagaacttgaaggccaccaatatggtcttgaagaagcactgtgaggaaactactatcagaatgtttggcggttcccatcgttaaa |
28742518 |
T |
|
| Q |
244 |
tctagttcaggacaagcaggatagtaatgg |
273 |
Q |
| |
|
| | |||||||||||||||||||||||||| |
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|
| T |
28742519 |
tgtggttcaggacaagcaggatagtaatgg |
28742548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 76 - 272
Target Start/End: Original strand, 28735269 - 28735465
Alignment:
| Q |
76 |
agagaacttgcctgcagaacatcaccaatattaacagcaagagcctaaggtattggtggtacatcaatccacttttccttgtgaagaacttgaaggccac |
175 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||||| |||| ||||||||||| ||||||||||| | || |||||||||||| |||| |
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|
| T |
28735269 |
agagaacttgcctgcagaagatcaccaatattaacaacaagagcctcgggtaccggtggtacatcgatccacttttcttggtaaagaacttgaagaccac |
28735368 |
T |
|
| Q |
176 |
caaaatggtcttgaagaagcttggcgaggaaactactatcagaatgtttggcggttcccatcgttaaatctagttcaggacaagcaggatagtaatg |
272 |
Q |
| |
|
||| ||||||||| |||||| | ||| ||||||| |||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||| |
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|
| T |
28735369 |
caatatggtcttggagaagcactgtgagaaaactaccatcagaatgtttggtggttcccattgttaaatctggttcaggacaagcaggatagtaatg |
28735465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 76 - 272
Target Start/End: Original strand, 28700265 - 28700464
Alignment:
| Q |
76 |
agagaacttgcctgcagaacatcaccaatattaacagcaagagcctaaggtattggtggtacatcaatccacttttccttgtgaagaacttgaaggccac |
175 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||| |||||||| |||| ||||||||||| |||||||| || | |||||||||||||||||||| |
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|
| T |
28700265 |
agagaacttgcctgcagaagatcaccgatattaacaacaagagccccgggtaccggtggtacatcgatccacttgtcttggtgaagaacttgaaggccac |
28700364 |
T |
|
| Q |
176 |
caa-aat--ggtcttgaagaagcttggcgaggaaactactatcagaatgtttggcggttcccatcgttaaatctagttcaggacaagcaggatagtaatg |
272 |
Q |
| |
|
||| ||| ||||||| |||||| | ||| |||||| |||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||| |
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|
| T |
28700365 |
caataatacggtcttggagaagcactgtgagaaaactaacatcagaatgtttggtggttcccattgttaaatctggttcaggacaagcaggatagtaatg |
28700464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 78 - 272
Target Start/End: Original strand, 28783337 - 28783534
Alignment:
| Q |
78 |
agaacttgcctgcagaacatcaccaatattaacagcaagagcctaaggtattggtggtacatcaatccacttttccttgtgaagaacttgaaggccacca |
177 |
Q |
| |
|
|||||||||||| |||| |||||||| ||||||| ||||||| | ||||||||| |||| |||||||||||| | || ||||| |||||| ||||||||| |
|
|
| T |
28783337 |
agaacttgcctgtagaagatcaccaacattaacaacaagagcatcaggtattggaggtatatcaatccacttgttctggtgaaaaacttggaggccacca |
28783436 |
T |
|
| Q |
178 |
aaatg---gtcttgaagaagcttggcgaggaaactactatcagaatgtttggcggttcccatcgttaaatctagttcaggacaagcaggatagtaatg |
272 |
Q |
| |
|
| ||| |||||||||||| | ||| |||| ||||||||||||||| | ||||||||| ||||| ||| ||||||||||||||||||||||||| |
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|
| T |
28783437 |
atatgatcatcttgaagaagcaatgtgagaaaacaactatcagaatgttttgtggttcccatagttaattctggttcaggacaagcaggatagtaatg |
28783534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 84 - 195
Target Start/End: Original strand, 16414496 - 16414607
Alignment:
| Q |
84 |
tgcctgcagaacatcaccaatattaacagcaagagcctaaggtattggtggtacatcaatccacttttccttgtgaagaacttgaaggccaccaaaatgg |
183 |
Q |
| |
|
||||||||||| ||| ||||||||||| ||||||| ||| || || ||||||||||||||| | ||| |||||||| |||||||||||| | ||| |
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|
| T |
16414496 |
tgcctgcagaaaatcgccaatattaacgattagagcctcaggcataggaggtacatcaatccacatgtccctgtgaagatattgaaggccacctacatga |
16414595 |
T |
|
| Q |
184 |
tcttgaagaagc |
195 |
Q |
| |
|
||||| |||||| |
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|
| T |
16414596 |
tcttgtagaagc |
16414607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 96 - 176
Target Start/End: Complemental strand, 16439346 - 16439266
Alignment:
| Q |
96 |
atcaccaatattaacagcaagagcctaaggtattggtggtacatcaatccacttttccttgtgaagaacttgaaggccacc |
176 |
Q |
| |
|
|||||| ||||||||| ||||||||| | ||| || ||||||||||||||| | || || ||||||||||| || ||||| |
|
|
| T |
16439346 |
atcaccgatattaacaacaagagcctcatgtagaggaggtacatcaatccacatatctttatgaagaacttggagaccacc |
16439266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 272
Target Start/End: Complemental strand, 10768639 - 10768505
Alignment:
| Q |
138 |
atcaatccacttttccttgtgaagaacttgaaggccaccaaaatggtcttgaagaagcttggcgaggaaactactatcagaatgtttggcggttcccatc |
237 |
Q |
| |
|
||||||||| || |||| | ||||||||| |||||||||| ||||||||| |||||| | ||||||| | |||||||||| |||| ||||||| |
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|
| T |
10768639 |
atcaatccatttatcctgataaagaacttggaggccaccaatatggtcttggagaagcacagtgaggaaatcattatcagaatgcttggttgttcccaca |
10768540 |
T |
|
| Q |
238 |
gttaaatctagttcaggacaagcaggatagtaatg |
272 |
Q |
| |
|
|| || ||| |||||||||||| |||||| ||||| |
|
|
| T |
10768539 |
gtcaattctggttcaggacaaggaggataataatg |
10768505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 159 - 273
Target Start/End: Complemental strand, 2050885 - 2050771
Alignment:
| Q |
159 |
aagaacttgaaggccaccaaaatggtcttgaagaagcttggcgaggaaactactatcagaatgtttggcggttcccatcgttaaatctagttcaggacaa |
258 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||| | ||||||| | |||||||||| || | ||||| | || || ||| ||||||||||| |
|
|
| T |
2050885 |
aagaacttggaggccaccaatatggtcttgaagaagcactgtgaggaaatcattatcagaatgctttgttgttccgacagtcaattctggttcaggacaa |
2050786 |
T |
|
| Q |
259 |
gcaggatagtaatgg |
273 |
Q |
| |
|
| |||||| |||||| |
|
|
| T |
2050785 |
ggaggataataatgg |
2050771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 159 - 273
Target Start/End: Complemental strand, 2055294 - 2055180
Alignment:
| Q |
159 |
aagaacttgaaggccaccaaaatggtcttgaagaagcttggcgaggaaactactatcagaatgtttggcggttcccatcgttaaatctagttcaggacaa |
258 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||| | ||||||| | |||||||||| || | ||||| | || || ||| ||||||||||| |
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|
| T |
2055294 |
aagaacttggaggccaccaatatggtcttgaagaagcactgtgaggaaatcattatcagaatgctttgttgttccgacagtcaattctggttcaggacaa |
2055195 |
T |
|
| Q |
259 |
gcaggatagtaatgg |
273 |
Q |
| |
|
| ||| ||||||||| |
|
|
| T |
2055194 |
ggagggtagtaatgg |
2055180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 267 - 343
Target Start/End: Original strand, 36467601 - 36467676
Alignment:
| Q |
267 |
gtaatggtgtttgtagtgagcaagggaaaagagaattccaatggttacaaatgcattagtgatgtgacaaatgatga |
343 |
Q |
| |
|
||||||||||||| | |||||||||||||| |||| | |||||||||||||||| | |||||||||| ||||||| |
|
|
| T |
36467601 |
gtaatggtgtttgcaatgagcaagggaaaa-agaactttgatggttacaaatgcatcaatgatgtgacagatgatga |
36467676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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