View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_low_63 (Length: 303)
Name: NF20783_low_63
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_low_63 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 4537442 - 4537731
Alignment:
| Q |
1 |
ttgattattaagaaccaaaatttattataacttttaatctcgattttattaaattataagtaattttgatatggattcaagaaattacgctatgttatat |
100 |
Q |
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| T |
4537442 |
ttgattattaagaatcaaaatttattataacttttaatctcgattttattaaattataagttattttgatatggattcaagaaattacgttatgttataa |
4537541 |
T |
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| Q |
101 |
atcaaacttgttatatgacta-aaacattcatacataaattcatttcattctcaaactcaactttaactatcaattttacaaaacagagtttacaaaatt |
199 |
Q |
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| T |
4537542 |
atcaaacttgttatatgactgcaaacattcatacataaattcatttcattctcaaactcaactttaactatcaattttacaaaacagagtttacaaaatt |
4537641 |
T |
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| Q |
200 |
acgattaacaaatattcgtccaataaacactaaatttcttttactcaatcaccaaaatctataaactcgggtacttcccatcctatgcat |
289 |
Q |
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| T |
4537642 |
acgattaacaaatattcgtccaataaacactaaatttcttttactcaatcaccaaaatctatcaactcaggtacttcccatcctatgcat |
4537731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 33648774 - 33648724
Alignment:
| Q |
169 |
atcaattttacaaaacagagtttacaaaattacgattaacaaatattcgtc |
219 |
Q |
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| T |
33648774 |
atcaattttacaaaacagaatttacaaaatcacgattaacaaatgttcgtc |
33648724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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