View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_low_64 (Length: 301)
Name: NF20783_low_64
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_low_64 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 17 - 287
Target Start/End: Complemental strand, 29505898 - 29505628
Alignment:
| Q |
17 |
caaatttcgtgtgcttgtgttgtgatgtaaaggcaaacatgcattgagatggtaagataaactgtttttcttgttaatgacacggtattcattttctggc |
116 |
Q |
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| T |
29505898 |
caaatttcgtgtgcttgtgttgtgatgcaaaggcaaacatgcattgagatggtaagataaactgtttttcttgttaatgacacggtattcattttctggt |
29505799 |
T |
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| Q |
117 |
aattttaagattgaaatatttgaagaacaatatatctggtccaaactacatttctaattttgaaaatgaatcttgctgatatgaaaatttagctactcac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
29505798 |
aattttaagattgaaatatttgaagaacaatatatctggtccaaactacatttctaattttgaaaatgaatcttgcagatatgaaaacttagctactcac |
29505699 |
T |
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| Q |
217 |
cataattaagaagactcaaagaaccttcgaaagatgcttccatatttttcatctataacatctataaagtt |
287 |
Q |
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| T |
29505698 |
cataattaagaagactcaaagaacctttgaaagatgcttcgatatttttcatctataacatctataaagtt |
29505628 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 10241036 - 10241116
Alignment:
| Q |
123 |
aagattgaaatatttgaagaacaatatatctggtccaaactacatttctaattttgaaaatgaatcttgctgatatgaaaa |
203 |
Q |
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|||| ||| |||||||||||||||||||| |||||||| || ||||||||||| ||| | || ||||| |||||||||| |
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| T |
10241036 |
aagagtgagatatttgaagaacaatatatatggtccaagttaaatttctaatttggaagctaaaccttgcagatatgaaaa |
10241116 |
T |
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