View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20783_low_65 (Length: 298)

Name: NF20783_low_65
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20783_low_65
NF20783_low_65
[»] chr3 (4 HSPs)
chr3 (149-282)||(35188905-35189038)
chr3 (1-117)||(35189071-35189187)
chr3 (149-230)||(3861150-3861231)
chr3 (160-205)||(49019534-49019579)
[»] chr1 (2 HSPs)
chr1 (149-235)||(5242576-5242662)
chr1 (158-230)||(37306351-37306423)
[»] chr7 (2 HSPs)
chr7 (149-225)||(46135143-46135219)
chr7 (149-230)||(37587446-37587527)
[»] chr5 (2 HSPs)
chr5 (149-225)||(1554767-1554843)
chr5 (149-205)||(9102340-9102396)
[»] chr6 (2 HSPs)
chr6 (149-224)||(8001329-8001404)
chr6 (158-216)||(20473497-20473555)
[»] chr2 (5 HSPs)
chr2 (150-224)||(13467436-13467510)
chr2 (149-225)||(4639993-4640069)
chr2 (149-225)||(34099066-34099142)
chr2 (149-216)||(9483989-9484056)
chr2 (150-229)||(13464697-13464776)
[»] chr4 (4 HSPs)
chr4 (149-223)||(50091284-50091358)
chr4 (149-230)||(36280257-36280338)
chr4 (151-213)||(11942579-11942641)
chr4 (174-222)||(10065288-10065336)
[»] chr8 (4 HSPs)
chr8 (158-223)||(15282133-15282198)
chr8 (158-223)||(15462502-15462567)
chr8 (150-212)||(15311441-15311503)
chr8 (150-212)||(15491810-15491872)


Alignment Details
Target: chr3 (Bit Score: 126; Significance: 5e-65; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 149 - 282
Target Start/End: Complemental strand, 35189038 - 35188905
Alignment:
Q  149 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagcttcttgtaaatttggtatttaatat 248  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  35189038 ttgctctcgttgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctacgagagcttcttgtgaatttggtatttaatat 35188939  T
Q  249 attatatattttgtgtgttaatattaaaaaatgt 282  Q
    ||||||||||||||||||||||||||||||||||    
T  35188938 attatatattttgtgtgttaatattaaaaaatgt 35188905  T

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Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 35189187 - 35189071
Alignment:
Q  1 tttgagttgtcgtttgatgatgttaagttaatgttcatgtttccctccctccgcaaaatcatcgttggggtctccccaataatccaagtgagcacgtgga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35189187 tttgagttgtcgtttgatgatgttaagttaatgttcatgtttccctccctccgcaaaatcatcgttggggtctccccaataatccaagtgagcacgtgga 35189088  T
Q  101 attgtctgtgcaaaaca 117  Q
    |||||||||||||||||    
T  35189087 attgtctgtgcaaaaca 35189071  T

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Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 149 - 230
Target Start/End: Original strand, 3861150 - 3861231
Alignment:
Q  149 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagcttcttgt 230  Q
    ||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||| |||||    
T  3861150 ttgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctatgaaagctgcttgt 3861231  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 49019534 - 49019579
Alignment:
Q  160 gagagttgaactcaagacctcccacttactaaacgggtgctctaac 205  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||    
T  49019534 gagagttgaactcaagacctcccgcttactaaacaggtgctctaac 49019579  T

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Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 149 - 235
Target Start/End: Complemental strand, 5242662 - 5242576
Alignment:
Q  149 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagcttcttgtaaatt 235  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  5242662 ttgctctcgttgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctacgagagctgcttgttaatt 5242576  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 158 - 230
Target Start/End: Complemental strand, 37306423 - 37306351
Alignment:
Q  158 ttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagcttcttgt 230  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||| ||||    
T  37306423 ttgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctatgaaagcttgttgt 37306351  T

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Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 46135219 - 46135143
Alignment:
Q  149 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagctt 225  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  46135219 ttgctctcgttgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctacgagagctt 46135143  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 149 - 230
Target Start/End: Original strand, 37587446 - 37587527
Alignment:
Q  149 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagcttcttgt 230  Q
    ||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||| ||||    
T  37587446 ttgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctatgaaagctttttgt 37587527  T

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Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 1554843 - 1554767
Alignment:
Q  149 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagctt 225  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1554843 ttgctctcgttgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctacgagagctt 1554767  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 9102396 - 9102340
Alignment:
Q  149 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaac 205  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9102396 ttgctctcgttgagagttgaactcaagacctcccgcttactaaacgggtgctctaac 9102340  T

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Target: chr6 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 8001404 - 8001329
Alignment:
Q  149 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagct 224  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8001404 ttgctctcgttgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctacgagagct 8001329  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 158 - 216
Target Start/End: Original strand, 20473497 - 20473555
Alignment:
Q  158 ttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagcta 216  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  20473497 ttgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagcta 20473555  T

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Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 150 - 224
Target Start/End: Original strand, 13467436 - 13467510
Alignment:
Q  150 tgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagct 224  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  13467436 tgctctcgttgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctacgagagct 13467510  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 149 - 225
Target Start/End: Original strand, 4639993 - 4640069
Alignment:
Q  149 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagctt 225  Q
    ||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||    
T  4639993 ttgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctatgaaagctt 4640069  T

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Target: chr2; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 34099142 - 34099066
Alignment:
Q  149 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagctt 225  Q
    ||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||    
T  34099142 ttgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctatgaaagctt 34099066  T

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Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 149 - 216
Target Start/End: Original strand, 9483989 - 9484056
Alignment:
Q  149 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagcta 216  Q
    ||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9483989 ttgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagcta 9484056  T

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Target: chr2; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 150 - 229
Target Start/End: Original strand, 13464697 - 13464776
Alignment:
Q  150 tgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagcttcttg 229  Q
    |||||||||| | ||||||| |||||||||||| ||||||||||  |||||||||||||||||||||| |||||||||||    
T  13464697 tgctctcgttaaaagttgaattcaagacctcccgcttactaaacaagtgctctaaccaactgagctacaagagcttcttg 13464776  T

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Target: chr4 (Bit Score: 67; Significance: 9e-30; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 149 - 223
Target Start/End: Complemental strand, 50091358 - 50091284
Alignment:
Q  149 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagc 223  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  50091358 ttgctctcgttgagagttgaactcaagacctcccgcttactaaacaggtgctctaaccaactgagctacgagagc 50091284  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 149 - 230
Target Start/End: Complemental strand, 36280338 - 36280257
Alignment:
Q  149 ttgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagcttcttgt 230  Q
    ||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||    
T  36280338 ttgctttcattgagagttgaactcaagacctcccgcttactaaacgggtgctctaaccaactgagctatgaaagcttcttgt 36280257  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 151 - 213
Target Start/End: Original strand, 11942579 - 11942641
Alignment:
Q  151 gctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgag 213  Q
    ||||||||||||||| ||||||||||| |||| ||||||||||||||| ||||||||||||||    
T  11942579 gctctcgttgagagtcgaactcaagacgtcccgcttactaaacgggtgatctaaccaactgag 11942641  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 10065336 - 10065288
Alignment:
Q  174 agacctcccacttactaaacgggtgctctaaccaactgagctacgagag 222  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  10065336 agacctcccgcttactaaacgggtgctctaaccaaatgagctacgagag 10065288  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 15282133 - 15282198
Alignment:
Q  158 ttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagc 223  Q
    |||||||||||| |||| |||||||| ||| |||||  ||||||||||||||||| |||| |||||    
T  15282133 ttgagagttgaattcaaaacctcccatttattaaacaagtgctctaaccaactgaactaccagagc 15282198  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 15462502 - 15462567
Alignment:
Q  158 ttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactgagctacgagagc 223  Q
    |||||||||||| |||| |||||||| ||| |||||  ||||||||||||||||| |||| |||||    
T  15462502 ttgagagttgaattcaaaacctcccatttattaaacaagtgctctaaccaactgaactaccagagc 15462567  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 15311441 - 15311503
Alignment:
Q  150 tgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactga 212  Q
    |||||||||||||||||||| |||| ||||| | || | ||||||| | ||||||||||||||    
T  15311441 tgctctcgttgagagttgaattcaaaacctctcgctcattaaacggattctctaaccaactga 15311503  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 212
Target Start/End: Original strand, 15491810 - 15491872
Alignment:
Q  150 tgctctcgttgagagttgaactcaagacctcccacttactaaacgggtgctctaaccaactga 212  Q
    |||||||||||||||||||| |||| ||||| | || | ||||||| | ||||||||||||||    
T  15491810 tgctctcgttgagagttgaattcaaaacctctcgctcattaaacggattctctaaccaactga 15491872  T

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