View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_low_67 (Length: 293)
Name: NF20783_low_67
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_low_67 |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 13 - 275
Target Start/End: Original strand, 43704210 - 43704472
Alignment:
| Q |
13 |
gataatactaacaaaggtcatttcgacaagtattattgggttatagttggaattaatgctctaaatctattgtattacttagtatgcagttgggcttatg |
112 |
Q |
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| T |
43704210 |
gataatattaacaaaggtcatttcgacaagtattattgggttatagttggaattaatgctctaaatctattgtattacttagtatgcagttgggcttatg |
43704309 |
T |
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| Q |
113 |
gacctacagttgatgaagtatccaatgtgagtaaagaaaatggttccaaagtggaagaatcaactgaattcaagcatatgaatccacactttgatgacaa |
212 |
Q |
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| T |
43704310 |
gacctacagttgatgaagtatccaatgtgagtaaagaaaatggttccaaagtggaagaatcaactgaattcaagcatatgaatccacactttgatgacaa |
43704409 |
T |
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| Q |
213 |
ggttagtggtgaaactagttcaaaggagaaagagttaactgaattcaagaacggggcccaggt |
275 |
Q |
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| T |
43704410 |
ggttagtggtgaaactagttcaaaggagaaagagttaactgaattcaagaatggggcccaggt |
43704472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 13 - 275
Target Start/End: Original strand, 43715181 - 43715443
Alignment:
| Q |
13 |
gataatactaacaaaggtcatttcgacaagtattattgggttatagttggaattaatgctctaaatctattgtattacttagtatgcagttgggcttatg |
112 |
Q |
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| T |
43715181 |
gataatattaacaaaggtcatttcgacaagtattattgggttatagttggaattaatgctctaaatctattgtattacttagtatgcagttgggcttatg |
43715280 |
T |
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| Q |
113 |
gacctacagttgatgaagtatccaatgtgagtaaagaaaatggttccaaagtggaagaatcaactgaattcaagcatatgaatccacactttgatgacaa |
212 |
Q |
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| T |
43715281 |
gacctacagttgatgaagtatccaatgtgagtaaagaaaatggttccaaagtggaagaatcaactgaattcaagcatatgaatccacactttgatgacaa |
43715380 |
T |
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| Q |
213 |
ggttagtggtgaaactagttcaaaggagaaagagttaactgaattcaagaacggggcccaggt |
275 |
Q |
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| T |
43715381 |
ggttagtggtgaaactagttcaaaggagaaagagttaactgaattcaagaatggggcccaggt |
43715443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 13 - 268
Target Start/End: Original strand, 43687352 - 43687610
Alignment:
| Q |
13 |
gataatactaacaaaggtcatttcgacaagtattattgggttatagttggaattaatgctctaaatctattgtattacttagtatgcagttgggcttatg |
112 |
Q |
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||||||| |||||| |||||||||||||| |||| |||||||||| ||||||||||| ||| |||||| |||||||||||||||||||||||||||||| |
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| T |
43687352 |
gataatattaacaagggtcatttcgacaaatatttatgggttatagctggaattaatgttcttaatctactgtattacttagtatgcagttgggcttatg |
43687451 |
T |
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| Q |
113 |
gacctacagttgatgaagtatccaatgtgagt---aaagaaaatggttccaaagtggaagaatcaactgaattcaagcatatgaatccacactttgatga |
209 |
Q |
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||||||||| |||| |||||||||| |||||| |||||||||||||||| | |||| | |||||||||||||| || | |||||||| ||||||| |
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| T |
43687452 |
gacctacagctgatcaagtatccaaagtgagtgaagaagaaaatggttccaaggaggaaaattcaactgaattcaaaaatgtcaatccacaaattgatga |
43687551 |
T |
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| Q |
210 |
caaggttagtggtgaaactagttcaaaggagaaagagttaactgaattcaagaacgggg |
268 |
Q |
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| T |
43687552 |
caaggttagtgatgaaactagttcaaaggagaaagagttaactgaattcaagaatgggg |
43687610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 209
Target Start/End: Original strand, 43728915 - 43729111
Alignment:
| Q |
13 |
gataatactaacaaaggtcatttcgacaagtattattgggttatagttggaattaatgctctaaatctattgtattacttagtatgcagttgggcttatg |
112 |
Q |
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||||||| |||||| |||| || ||||||||| ||| |||||||| |||| ||| |||||| ||| | |||||| ||||| |||||||||||||||| |
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| T |
43728915 |
gataatattaacaagggtcgttacgacaagtactatatggttatagctggagttagtgctcttaatttgctgtattttttagtttgcagttgggcttatg |
43729014 |
T |
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| Q |
113 |
gacctacagttgatgaagtatccaatgtgagtaaagaaaatggttccaaagtggaagaatcaactgaattcaagcatatgaatccacactttgatga |
209 |
Q |
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|||||||||||||| ||||||| || ||||| | ||||||| |||||| | | |||| ||||||||||||||| | ||||||||| |||||||| |
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| T |
43729015 |
gacctacagttgatcaagtatctaaggtgagcgacgaaaatgattccaaggagaaagattcaactgaattcaagaaggtgaatccactatttgatga |
43729111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 125
Target Start/End: Complemental strand, 23432 - 23329
Alignment:
| Q |
22 |
aacaaaggtcatttcgacaagtattattgggttatagttggaattaatgctctaaatctattgtattacttagtatgcagttgggcttatggacctacag |
121 |
Q |
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||||| |||||||| |||||||| | |||| |||||| |||||||| ||| || ||| || | ||||| |||| ||||||||||||||||||||| ||| |
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| T |
23432 |
aacaagggtcattttgacaagtactcttggcttatagctggaattagtgcccttaatatactctattatctagtttgcagttgggcttatggacctgcag |
23333 |
T |
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| Q |
122 |
ttga |
125 |
Q |
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|||| |
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| T |
23332 |
ttga |
23329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 125
Target Start/End: Original strand, 25274296 - 25274399
Alignment:
| Q |
22 |
aacaaaggtcatttcgacaagtattattgggttatagttggaattaatgctctaaatctattgtattacttagtatgcagttgggcttatggacctacag |
121 |
Q |
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||||| |||||||| |||||||| | |||| |||||| |||||||| ||| | ||| || | ||||| || | ||||||||||||||||||||| ||| |
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| T |
25274296 |
aacaagggtcattttgacaagtactcttggcttatagctggaattagtgcctttaatatactctattatataatttgcagttgggcttatggacctgcag |
25274395 |
T |
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| Q |
122 |
ttga |
125 |
Q |
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|||| |
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| T |
25274396 |
ttga |
25274399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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