View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_low_68 (Length: 292)
Name: NF20783_low_68
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_low_68 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 5719318 - 5719034
Alignment:
| Q |
1 |
ggaagccaatcaaatattgtacagacatcatgggatataatagctttgattcatgctggccaggtaccttcacctgttattttaaattaaaattcatgct |
100 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5719318 |
ggaagccaatcaaatattgtacagacatcatgggctctaatagctttgattcatgctggccaggtaccttcacctgttattttaaattaaaattcatgct |
5719219 |
T |
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| Q |
101 |
ttgtcactatctaactacaaatgaatgttgtgtnnnnnnnnctactaatgaatacataaaaatatggttatttctatatatatctgtacaggcggagaga |
200 |
Q |
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| T |
5719218 |
ttgtcactatctaactacaaatgaatgttgtgtaaaaaaaactactaatgaatacataaaaatatggttatttttatatatatctgtacaggcggagaga |
5719119 |
T |
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| Q |
201 |
gacgctactcctcttcatcgtgctgtaaaattaatcatcaatctccaacaagaggagggtgattggccccaacaggttcatctca |
285 |
Q |
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| T |
5719118 |
gacgctactcctcttcatcgtgctgtaaaattaatcatcaatctccaacaagaggagggtgattggccccaacaggttcatctca |
5719034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 5687201 - 5686918
Alignment:
| Q |
1 |
ggaagccaatcaaatattgtacagacatcatgggatataatagctttgattcatgctggccaggtaccttcacctgttattttaaattaaaattcatgct |
100 |
Q |
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||||||||||||||||||||||||||| |||||| | |||| |||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
5687201 |
ggaagccaatcaaatattgtacagacagcatgggctctaatggctttgattcatgccggccaggtaccttcacctgtcattgtaaattaaaattcatgct |
5687102 |
T |
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| Q |
101 |
ttgtcactatctaactacaaatgaatgttgtgtnnnnnnnnctactaatgaatacataaaaatatggttatttctatatatatctgtacaggcggagaga |
200 |
Q |
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| T |
5687101 |
ttgttactatataactacaaatgaatgttgtgtaaaaaaa-ctactaatgaatacatataaatatggttatttctatatatatctgtacaggcggagaga |
5687003 |
T |
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| Q |
201 |
gacgctactcctcttcatcgtgctgtaaaattaatcatcaatctccaacaagaggagggtgattggccccaacaggttcatctca |
285 |
Q |
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| T |
5687002 |
gaccctactcctcttcatcgtgctgtaaaattaatcatcaatctccaacaagaggagggtgattggccccaacaggtttatctca |
5686918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 187 - 285
Target Start/End: Complemental strand, 5666042 - 5665944
Alignment:
| Q |
187 |
tacaggcggagagagacgctactcctcttcatcgtgctgtaaaattaatcatcaatctccaacaagaggagggtgattggccccaacaggttcatctca |
285 |
Q |
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| T |
5666042 |
tacaggcggagagagacgctactcctcttcatcgtgctgtaaaattaatcatcaatctccaactaaaggagggtgattggccccaacaggttcatctca |
5665944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 5666194 - 5666062
Alignment:
| Q |
1 |
ggaagccaatcaaatattgtacagacatcatgggatataatagctttgattcatgctggccaggtaccttcacctgttattttaaattaaaattcatgct |
100 |
Q |
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|||||||||||||||||||||||||||||||||| | |||| |||||||||||||| |||||||||||||| || ||| | |||||||||||||||||| |
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| T |
5666194 |
ggaagccaatcaaatattgtacagacatcatgggctctaatggctttgattcatgccggccaggtaccttcgccgtttactgtaaattaaaattcatgct |
5666095 |
T |
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| Q |
101 |
ttgtcactatctaactacaaatgaatgttgtgt |
133 |
Q |
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|| | |||||||||||||||||||||||||||| |
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| T |
5666094 |
tttttactatctaactacaaatgaatgttgtgt |
5666062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 189 - 281
Target Start/End: Complemental strand, 5652258 - 5652166
Alignment:
| Q |
189 |
caggcggagagagacgctactcctcttcatcgtgctgtaaaattaatcatcaatctccaacaagaggagggtgattggccccaacaggttcat |
281 |
Q |
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|||||||||| |||| | ||| ||||||||||||||| |||||||||||||||| |||| ||| |||||||| |||||||||||||||||| |
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| T |
5652258 |
caggcggagatagacccaactactcttcatcgtgctgcaaaattaatcatcaattcccaattagaagagggtgactggccccaacaggttcat |
5652166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 281
Target Start/End: Original strand, 5601497 - 5601589
Alignment:
| Q |
189 |
caggcggagagagacgctactcctcttcatcgtgctgtaaaattaatcatcaatctccaacaagaggagggtgattggccccaacaggttcat |
281 |
Q |
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| T |
5601497 |
caggcgaagatagaccctactcctcttcatcgtgctgcaaatttaattatcaattcgcaactagaagatggcggctggccccaacaggttcat |
5601589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 281
Target Start/End: Complemental strand, 5639123 - 5639031
Alignment:
| Q |
189 |
caggcggagagagacgctactcctcttcatcgtgctgtaaaattaatcatcaatctccaacaagaggagggtgattggccccaacaggttcat |
281 |
Q |
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|||||| ||| |||| ||||||||||||||||||||| ||| ||||| |||||| |||| ||| || || | |||||||||||||||||| |
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| T |
5639123 |
caggcgaagatagaccctactcctcttcatcgtgctgcaaatttaattatcaattcgcaactagaagatggcggctggccccaacaggttcat |
5639031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 283
Target Start/End: Original strand, 166763 - 166857
Alignment:
| Q |
189 |
caggcggagagagacgctactcctcttcatcgtgctgtaaaattaatcatcaatctccaacaagaggagggtgattggccccaacaggttcatct |
283 |
Q |
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| T |
166763 |
caggcagagagagaccctactcctcttcatcgtgctgcaaaattgctcatcaattcccagttggaagaaggcaattggccccaacaggttcatct |
166857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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