View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20783_low_76 (Length: 277)

Name: NF20783_low_76
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20783_low_76
NF20783_low_76
[»] chr2 (13 HSPs)
chr2 (53-178)||(28171381-28171506)
chr2 (181-259)||(28156746-28156824)
chr2 (60-171)||(28174594-28174706)
chr2 (63-169)||(28214379-28214485)
chr2 (65-177)||(28182989-28183102)
chr2 (63-169)||(28221799-28221905)
chr2 (63-168)||(32310351-32310456)
chr2 (63-168)||(32564364-32564469)
chr2 (75-168)||(32786819-32786912)
chr2 (63-168)||(32814027-32814132)
chr2 (181-227)||(28163873-28163919)
chr2 (60-159)||(32306215-32306314)
chr2 (4-36)||(28171357-28171389)


Alignment Details
Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 53 - 178
Target Start/End: Original strand, 28171381 - 28171506
Alignment:
Q  53 tgactaatgtgatttcattcgacaaaggctgtacatctttcaaggaacagcgcaaccagacctgagtatatttcttgatttgcttagtcagatgaggcaa 152  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  28171381 tgactaatgtgatttcattcgacgaagactgtacatctttcaaggaacagcgcaaccagacctgagtatacttcttgatttgcttagtaagatgaggcaa 28171480  T
Q  153 aactgtcaagacaacaagaacatcaa 178  Q
    |||||||||||||||||||| |||||    
T  28171481 aactgtcaagacaacaagaatatcaa 28171506  T

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Target: chr2; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 181 - 259
Target Start/End: Original strand, 28156746 - 28156824
Alignment:
Q  181 ataaactttcatatttgcacaactgtttcaacacaatgccccatgtgatccgaaatagagaactagttcaatagatata 259  Q
    |||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  28156746 ataaactttcatatttgcacaactgtgtcaaagcaatgccccatgtgatccgaaatagagaactagttcaatagatata 28156824  T

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Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 60 - 171
Target Start/End: Original strand, 28174594 - 28174706
Alignment:
Q  60 tgtgatttcattcgacaaaggctgtacatctttcaaggaacagcgcaaccagacctg-agtatatttcttgatttgcttagtcagatgaggcaaaactgt 158  Q
    |||||||| ||| ||||||| ||||||| |||| |||||||||||||||||||||||  |||||  ||||||||| |||||||||||||||| |||||||    
T  28174594 tgtgatttgatttgacaaagtctgtacaactttaaaggaacagcgcaaccagacctgtcgtatagctcttgattttcttagtcagatgaggctaaactgt 28174693  T
Q  159 caagacaacaaga 171  Q
    | |||||||||||    
T  28174694 ccagacaacaaga 28174706  T

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Target: chr2; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 63 - 169
Target Start/End: Complemental strand, 28214485 - 28214379
Alignment:
Q  63 gatttcattcgacaaaggctgtacatctttcaaggaacagcgcaaccagacctgagtatatttcttgatttgcttagtcagatgaggcaaaactgtcaag 162  Q
    ||||||||||  ||||||||||||  |||||||||||||| ||||||||||| |||||||  ||| ||||| |||||||||||||||||||||||||  |    
T  28214485 gatttcattcagcaaaggctgtacgactttcaaggaacagggcaaccagacccgagtatacctctcgatttccttagtcagatgaggcaaaactgtcctg 28214386  T
Q  163 acaacaa 169  Q
    |||||||    
T  28214385 acaacaa 28214379  T

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Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 65 - 177
Target Start/End: Original strand, 28182989 - 28183102
Alignment:
Q  65 tttcattcgacaaaggctgtacatctttcaaggaacagcgcaaccagacctgagtatat--ttcttgatttgcttagtcagatgaggcaaaactgtcaag 162  Q
    |||||||||||||||| | |||| | |||||||||||  |||||| || ||||||||||  |||||||||| ||||||||||||||||||||||||| ||    
T  28182989 tttcattcgacaaaggatttaca-cattcaaggaacaaggcaaccggatctgagtatatacttcttgatttccttagtcagatgaggcaaaactgtccag 28183087  T
Q  163 acaacaagaacatca 177  Q
    |||||||||| ||||    
T  28183088 acaacaagaatatca 28183102  T

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Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 63 - 169
Target Start/End: Original strand, 28221799 - 28221905
Alignment:
Q  63 gatttcattcgacaaaggctgtacatctttcaaggaacagcgcaaccagacctgagtatatttcttgatttgcttagtcagatgaggcaaaactgtcaag 162  Q
    ||||||||||  |||||||| |||  |||||||||||||| ||||||||||| |||||||  ||| ||||| || ||||||||||||||||||||||  |    
T  28221799 gatttcattcagcaaaggctctacgactttcaaggaacagggcaaccagacccgagtatacctctcgatttcctcagtcagatgaggcaaaactgtcctg 28221898  T
Q  163 acaacaa 169  Q
    |||||||    
T  28221899 acaacaa 28221905  T

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Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 168
Target Start/End: Original strand, 32310351 - 32310456
Alignment:
Q  63 gatttcattcgacaaaggctgtacatctttcaaggaacagcgcaaccagacctgagtatatttcttgatttgcttagtcagatgaggcaaaactgtcaag 162  Q
    ||||||||||  ||||||||||||  |||||||||||||| ||||||||| | |||||||  ||| ||||| || ||||||||||||| ||||||||  |    
T  32310351 gatttcattcagcaaaggctgtacgactttcaaggaacagggcaaccagatccgagtatacctctcgattttctcagtcagatgaggctaaactgtcctg 32310450  T
Q  163 acaaca 168  Q
    ||||||    
T  32310451 acaaca 32310456  T

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Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 63 - 168
Target Start/End: Complemental strand, 32564469 - 32564364
Alignment:
Q  63 gatttcattcgacaaaggctgtacatctttcaaggaacagcgcaaccagacctgagtatatttcttgatttgcttagtcagatgaggcaaaactgtcaag 162  Q
    ||||||||||  |||||| |||||  |||||||||||||| ||||||||| | |||||||  ||| ||||| || ||||||||||||| ||||||||  |    
T  32564469 gatttcattcagcaaaggttgtacgactttcaaggaacagggcaaccagatccgagtatacctctcgattttctcagtcagatgaggctaaactgtcctg 32564370  T
Q  163 acaaca 168  Q
    ||||||    
T  32564369 acaaca 32564364  T

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Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 75 - 168
Target Start/End: Complemental strand, 32786912 - 32786819
Alignment:
Q  75 caaaggctgtacatctttcaaggaacagcgcaaccagacctgagtatatttcttgatttgcttagtcagatgaggcaaaactgtcaagacaaca 168  Q
    ||||||||||||  |||||||||||||| |||||||||||  ||||||  ||| ||||| || ||||||||||||| ||||||||  |||||||    
T  32786912 caaaggctgtacgactttcaaggaacagggcaaccagacccaagtatacctctcgattttctcagtcagatgaggctaaactgtcctgacaaca 32786819  T

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Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 63 - 168
Target Start/End: Complemental strand, 32814132 - 32814027
Alignment:
Q  63 gatttcattcgacaaaggctgtacatctttcaaggaacagcgcaaccagacctgagtatatttcttgatttgcttagtcagatgaggcaaaactgtcaag 162  Q
    ||||||||||  |||||| |||||  |||||||||||||| ||||||||| | |||||||  ||| ||||| || ||||||||||||| ||||||||  |    
T  32814132 gatttcattcagcaaaggttgtacgactttcaaggaacagggcaaccagatccgagtatacctctcgattttctcagtcagatgaggctaaactgtcctg 32814033  T
Q  163 acaaca 168  Q
    ||||||    
T  32814032 acaaca 32814027  T

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Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 28163873 - 28163919
Alignment:
Q  181 ataaactttcatatttgcacaactgtttcaacacaatgccccatgtg 227  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||    
T  28163873 ataaactttcatatatgcacaactgtttcaaaacaatgccccatgtg 28163919  T

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Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 159
Target Start/End: Original strand, 32306215 - 32306314
Alignment:
Q  60 tgtgatttcattcgacaaaggctgtacatctttcaaggaacagcgcaaccagacctgagtatatttcttgatttgcttagtcagatgaggcaaaactgtc 159  Q
    |||||||||||||  |||||| |||||  |||||||||||||| ||||||||||| |||||||  ||| |||||  | |||| |||||| | ||||||||    
T  32306215 tgtgatttcattcagcaaaggttgtacgactttcaaggaacagggcaaccagacccgagtatacctctcgattttttcagtctgatgagactaaactgtc 32306314  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 28171357 - 28171389
Alignment:
Q  4 catgatgcaaccagaccttgaatatgactaatg 36  Q
    |||||||||||||||||||||||||||||||||    
T  28171357 catgatgcaaccagaccttgaatatgactaatg 28171389  T

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