View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20783_low_78 (Length: 273)

Name: NF20783_low_78
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20783_low_78
NF20783_low_78
[»] chr3 (33 HSPs)
chr3 (121-266)||(43750136-43750281)
chr3 (122-260)||(198855-198993)
chr3 (121-251)||(29375137-29375267)
chr3 (115-260)||(3383069-3383214)
chr3 (121-254)||(19241813-19241946)
chr3 (121-260)||(13364842-13364981)
chr3 (122-260)||(36881282-36881418)
chr3 (122-260)||(23088070-23088208)
chr3 (122-260)||(46694249-46694387)
chr3 (129-226)||(32835129-32835226)
chr3 (137-243)||(13702784-13702890)
chr3 (122-200)||(27707363-27707441)
chr3 (182-257)||(37780997-37781072)
chr3 (173-250)||(1455297-1455374)
chr3 (182-259)||(19897067-19897144)
chr3 (121-175)||(12094581-12094635)
chr3 (172-250)||(44522491-44522567)
chr3 (121-175)||(44277455-44277509)
chr3 (122-175)||(19911509-19911562)
chr3 (182-259)||(24064284-24064361)
chr3 (120-209)||(37293435-37293524)
chr3 (182-259)||(52805166-52805243)
chr3 (122-175)||(38805245-38805298)
chr3 (122-163)||(44276775-44276816)
chr3 (139-207)||(48820444-48820512)
chr3 (224-260)||(48963223-48963259)
chr3 (120-163)||(19912174-19912217)
chr3 (120-163)||(38806341-38806384)
chr3 (197-259)||(18356007-18356069)
chr3 (145-259)||(54086577-54086690)
chr3 (215-260)||(27707127-27707172)
chr3 (122-150)||(21797556-21797584)
chr3 (219-259)||(52009189-52009229)
[»] chr1 (37 HSPs)
chr1 (122-266)||(24772038-24772182)
chr1 (123-260)||(27211103-27211240)
chr1 (120-260)||(46771635-46771775)
chr1 (122-254)||(284333-284465)
chr1 (133-265)||(23526251-23526383)
chr1 (122-260)||(23045418-23045556)
chr1 (121-260)||(40783796-40783935)
chr1 (122-260)||(321626-321764)
chr1 (129-260)||(47037991-47038120)
chr1 (142-266)||(33082765-33082889)
chr1 (137-266)||(52037255-52037382)
chr1 (129-260)||(1749314-1749445)
chr1 (182-250)||(7765073-7765141)
chr1 (173-250)||(1837978-1838053)
chr1 (182-259)||(18396755-18396832)
chr1 (182-247)||(40562733-40562797)
chr1 (119-175)||(9588667-9588723)
chr1 (170-259)||(3657125-3657212)
chr1 (121-175)||(3943059-3943113)
chr1 (170-259)||(52478016-52478103)
chr1 (172-259)||(27143151-27143239)
chr1 (122-230)||(51064925-51065033)
chr1 (170-259)||(31003926-31004012)
chr1 (129-175)||(13984991-13985037)
chr1 (190-259)||(31061594-31061662)
chr1 (122-175)||(41959078-41959131)
chr1 (120-163)||(44227846-44227889)
chr1 (170-259)||(14351900-14351989)
chr1 (170-251)||(40261419-40261501)
chr1 (130-175)||(1168369-1168414)
chr1 (190-259)||(24876633-24876699)
chr1 (120-163)||(41959809-41959852)
chr1 (128-175)||(44228228-44228275)
chr1 (170-259)||(34458863-34458950)
chr1 (122-163)||(3943763-3943804)
chr1 (121-154)||(10845480-10845513)
chr1 (136-188)||(40564241-40564293)
[»] chr2 (19 HSPs)
chr2 (122-260)||(1102503-1102641)
chr2 (121-266)||(12969872-12970017)
chr2 (119-266)||(3518905-3519052)
chr2 (122-260)||(39938170-39938308)
chr2 (123-260)||(23366790-23366927)
chr2 (122-249)||(37673887-37674014)
chr2 (150-260)||(1646317-1646425)
chr2 (182-259)||(18078116-18078193)
chr2 (199-266)||(22388268-22388335)
chr2 (182-259)||(14779839-14779914)
chr2 (122-175)||(34224378-34224431)
chr2 (182-244)||(35179090-35179152)
chr2 (182-259)||(39562027-39562102)
chr2 (211-270)||(4917851-4917910)
chr2 (173-259)||(32840312-32840401)
chr2 (170-259)||(19976380-19976468)
chr2 (185-254)||(34242040-34242107)
chr2 (180-248)||(14117753-14117819)
chr2 (122-150)||(44365157-44365185)
[»] chr5 (20 HSPs)
chr5 (121-270)||(37900753-37900902)
chr5 (122-260)||(12806992-12807130)
chr5 (122-260)||(25773649-25773787)
chr5 (133-266)||(7277555-7277688)
chr5 (122-260)||(30720631-30720769)
chr5 (120-260)||(10285196-10285336)
chr5 (129-260)||(36561238-36561369)
chr5 (129-260)||(40886749-40886880)
chr5 (168-266)||(25683361-25683459)
chr5 (121-242)||(16983257-16983380)
chr5 (170-259)||(30403101-30403191)
chr5 (120-247)||(23098386-23098505)
chr5 (128-259)||(734478-734608)
chr5 (121-259)||(39070882-39071020)
chr5 (182-259)||(1056422-1056498)
chr5 (128-259)||(11319565-11319696)
chr5 (120-230)||(11796449-11796559)
chr5 (182-259)||(16054174-16054249)
chr5 (122-171)||(15305216-15305265)
chr5 (197-257)||(3763214-3763274)
[»] scaffold1431 (1 HSPs)
scaffold1431 (121-260)||(38-177)
[»] chr4 (28 HSPs)
chr4 (121-260)||(40122624-40122763)
chr4 (121-260)||(25704650-25704789)
chr4 (121-254)||(21310424-21310557)
chr4 (122-266)||(20249146-20249289)
chr4 (120-260)||(21661674-21661814)
chr4 (120-260)||(21670438-21670578)
chr4 (120-260)||(24706386-24706526)
chr4 (121-266)||(12071560-12071705)
chr4 (129-266)||(22321400-22321537)
chr4 (121-260)||(14261043-14261182)
chr4 (129-260)||(44568844-44568975)
chr4 (122-266)||(34324715-34324860)
chr4 (120-260)||(50767862-50768002)
chr4 (128-260)||(31892244-31892372)
chr4 (152-238)||(1988065-1988151)
chr4 (182-259)||(20714488-20714565)
chr4 (194-260)||(21064834-21064898)
chr4 (122-251)||(26676714-26676843)
chr4 (147-259)||(19692748-19692860)
chr4 (147-259)||(19703333-19703445)
chr4 (172-255)||(6129092-6129175)
chr4 (173-259)||(32543532-32543617)
chr4 (190-259)||(18507404-18507472)
chr4 (219-253)||(51777715-51777749)
chr4 (170-259)||(48652268-48652356)
chr4 (173-209)||(3929595-3929631)
chr4 (182-237)||(34284179-34284234)
chr4 (137-175)||(19361662-19361700)
[»] chr6 (23 HSPs)
chr6 (122-260)||(8626482-8626620)
chr6 (121-266)||(1605578-1605723)
chr6 (121-260)||(29260191-29260330)
chr6 (121-266)||(13757207-13757352)
chr6 (129-260)||(30734622-30734753)
chr6 (120-266)||(15064827-15064973)
chr6 (121-260)||(7761300-7761437)
chr6 (137-260)||(8235639-8235762)
chr6 (126-238)||(30734771-30734881)
chr6 (121-260)||(17942442-17942583)
chr6 (122-260)||(4129435-4129565)
chr6 (137-254)||(31559881-31559998)
chr6 (173-255)||(11370629-11370711)
chr6 (120-175)||(19996715-19996770)
chr6 (182-252)||(3798163-3798233)
chr6 (173-259)||(21277574-21277659)
chr6 (196-259)||(30235447-30235510)
chr6 (182-259)||(14287049-14287125)
chr6 (172-262)||(1814645-1814735)
chr6 (121-163)||(19996321-19996363)
chr6 (172-259)||(26860819-26860902)
chr6 (182-211)||(33845471-33845500)
chr6 (122-150)||(22054772-22054800)
[»] chr8 (30 HSPs)
chr8 (122-254)||(3585451-3585583)
chr8 (129-260)||(7146920-7147051)
chr8 (114-260)||(2540070-2540216)
chr8 (121-254)||(11646470-11646603)
chr8 (122-266)||(27034997-27035140)
chr8 (120-260)||(40058442-40058582)
chr8 (122-260)||(43275538-43275674)
chr8 (122-260)||(11174362-11174500)
chr8 (122-260)||(37345571-37345709)
chr8 (129-266)||(30999656-30999791)
chr8 (121-260)||(40918870-40919007)
chr8 (122-254)||(36068080-36068212)
chr8 (122-260)||(20546428-20546564)
chr8 (170-259)||(28326797-28326883)
chr8 (129-259)||(35866621-35866751)
chr8 (128-255)||(28562427-28562555)
chr8 (122-175)||(40486453-40486506)
chr8 (121-175)||(8697898-8697952)
chr8 (182-259)||(13881094-13881172)
chr8 (121-175)||(41307961-41308015)
chr8 (122-175)||(45278701-45278754)
chr8 (128-175)||(10646598-10646645)
chr8 (182-258)||(10180998-10181073)
chr8 (120-163)||(41305760-41305803)
chr8 (170-260)||(37510314-37510404)
chr8 (128-231)||(28567925-28568029)
chr8 (128-231)||(28575518-28575622)
chr8 (182-255)||(30268529-30268602)
chr8 (182-259)||(39151466-39151542)
chr8 (122-150)||(40494384-40494412)
[»] chr7 (19 HSPs)
chr7 (121-260)||(10981507-10981646)
chr7 (120-260)||(27813809-27813949)
chr7 (129-260)||(40348967-40349098)
chr7 (128-260)||(36453263-36453395)
chr7 (122-260)||(47110451-47110587)
chr7 (129-260)||(25614492-25614621)
chr7 (182-258)||(3091577-3091653)
chr7 (181-260)||(27942178-27942257)
chr7 (186-266)||(3498887-3498967)
chr7 (182-251)||(16360444-16360511)
chr7 (120-175)||(25060133-25060188)
chr7 (182-259)||(16662156-16662231)
chr7 (182-259)||(17636516-17636591)
chr7 (172-259)||(37983206-37983289)
chr7 (121-175)||(2911548-2911602)
chr7 (182-255)||(7743541-7743613)
chr7 (121-163)||(2910858-2910900)
chr7 (120-150)||(25566781-25566811)
chr7 (122-163)||(25059450-25059491)
[»] scaffold0054 (1 HSPs)
scaffold0054 (121-266)||(45453-45598)
[»] scaffold1770 (1 HSPs)
scaffold1770 (122-260)||(170-300)
[»] scaffold0062 (1 HSPs)
scaffold0062 (137-260)||(404-525)
[»] scaffold0056 (1 HSPs)
scaffold0056 (172-259)||(70874-70961)
[»] scaffold0025 (1 HSPs)
scaffold0025 (188-266)||(65296-65375)
[»] scaffold0257 (1 HSPs)
scaffold0257 (122-175)||(23467-23520)


Alignment Details
Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 121 - 266
Target Start/End: Original strand, 43750136 - 43750281
Alignment:
Q  121 atactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgtt 220  Q
    |||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  43750136 atactcccttcgtttcaaaatacatgtccattttggagaaattggagtaaccaagaaaccaaataaattttgttatttttgatgaaattatatgtgtgtt 43750235  T
Q  221 ttctataatactcttaaccatttattatttcattctatttcttctc 266  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||    
T  43750236 ttctataatacacttaaccatttattatttcattctattttttctc 43750281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 122 - 260
Target Start/End: Original strand, 198855 - 198993
Alignment:
Q  122 tactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttt 221  Q
    ||||| |||||||||||||||||||||||||||| |||||||| | | ||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  198855 tactccctccgtttcaaaatacatgtccattttggagaaattgcactgaccaagaaaccaaataaattttgttatttttgatgaaaatatatgtgtgttt 198954  T
Q  222 tctataatactcttaaccatttattatttcattctattt 260  Q
    |||||||||| ||||| |||||||||||||||| |||||    
T  198955 tctataatacccttaatcatttattatttcattttattt 198993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 121 - 251
Target Start/End: Original strand, 29375137 - 29375267
Alignment:
Q  121 atactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgtt 220  Q
    |||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||| ||||||||||||||| ||| ||||||||    
T  29375137 atactccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttcttatttttgatgaaaatatgtgtgtgtt 29375236  T
Q  221 ttctataatactcttaaccatttattatttc 251  Q
    ||||||||||| |||||||||||||||||||    
T  29375237 ttctataatacccttaaccatttattatttc 29375267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 115 - 260
Target Start/End: Original strand, 3383069 - 3383214
Alignment:
Q  115 aaatgaatactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatg 214  Q
    |||| |||||||  |||||||||||||| |||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||| ||| ||    
T  3383069 aaattaatactccttccgtttcaaaatatatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtg 3383168  T
Q  215 tgtgttttctataatactcttaaccatttattatttcattctattt 260  Q
    ||||||||||||||||| ||||| |||||||||||||||| |||||    
T  3383169 tgtgttttctataatacccttaaacatttattatttcattttattt 3383214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 121 - 254
Target Start/End: Complemental strand, 19241946 - 19241813
Alignment:
Q  121 atactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgtt 220  Q
    |||||| ||||||||||||||||||||||||||||  ||||||| | ||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  19241946 atactccctccgtttcaaaatacatgtccattttggtgaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatatgtgtgtt 19241847  T
Q  221 ttctataatactcttaaccatttattatttcatt 254  Q
    ||||||||||| ||||| ||||||||||||||||    
T  19241846 ttctataatacccttaatcatttattatttcatt 19241813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 121 - 260
Target Start/End: Original strand, 13364842 - 13364981
Alignment:
Q  121 atactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgtt 220  Q
    |||||| |||||||||||||||||||| ||||||| |||||||| | ||||||||||||| |||||||||||||||||||||||||| ||| ||||||||    
T  13364842 atactccctccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtt 13364941  T
Q  221 ttctataatactcttaaccatttattatttcattctattt 260  Q
    ||||||||||| ||||| |||||||||||||||| |||||    
T  13364942 ttctataatacccttaatcatttattatttcattttattt 13364981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 122 - 260
Target Start/End: Original strand, 36881282 - 36881418
Alignment:
Q  122 tactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttt 221  Q
    ||||| |||||||||||||||||||||||||||| |||||||| | ||||||||||||| ||||||||||||||||||||||||||  ||||||||||||    
T  36881282 tactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaa--atatgtgtgttt 36881379  T
Q  222 tctataatactcttaaccatttattatttcattctattt 260  Q
    |||||||||| |||||  ||||||||||||||| |||||    
T  36881380 tctataatacccttaattatttattatttcattttattt 36881418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 122 - 260
Target Start/End: Complemental strand, 23088208 - 23088070
Alignment:
Q  122 tactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttt 221  Q
    ||||| ||| ||||||||||| ||||| ||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||| ||| |||||||||    
T  23088208 tactccctctgtttcaaaatatatgtctattttgaagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 23088109  T
Q  222 tctataatactcttaaccatttattatttcattctattt 260  Q
    |||||||||| ||||| |||||||||||||||| |||||    
T  23088108 tctataatacccttaatcatttattatttcattttattt 23088070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 122 - 260
Target Start/End: Complemental strand, 46694387 - 46694249
Alignment:
Q  122 tactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttt 221  Q
    ||||| |||||||||||||||||||||| ||||| |||||||| | ||| ||||||||| |||||||||||||||||||||||||| ||| |||||||||    
T  46694387 tactccctccgtttcaaaatacatgtcctttttggagaaattgcactaatcaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 46694288  T
Q  222 tctataatactcttaaccatttattatttcattctattt 260  Q
    |||||||||| ||||| |||||||||||||||| |||||    
T  46694287 tctataatacccttaatcatttattatttcattttattt 46694249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 129 - 226
Target Start/End: Complemental strand, 32835226 - 32835129
Alignment:
Q  129 tccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctat 226  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||    
T  32835226 tccgtttcaaaatacatgtccattttggagaaattgcaataaccaagaaaacaaataaattttgttatttttgatgaaattatgtgtgtgttttctat 32835129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 137 - 243
Target Start/End: Original strand, 13702784 - 13702890
Alignment:
Q  137 aaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctataatactctta 236  Q
    |||||||||| | |||||| |||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||  |||    
T  13702784 aaaatacatgcctattttggagaaattgcagtaaccaagaaaccaaataaattttgatatttttgatgaaattatatgtttgttttctataataccttta 13702883  T
Q  237 accattt 243  Q
    |||||||    
T  13702884 accattt 13702890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 122 - 200
Target Start/End: Complemental strand, 27707441 - 27707363
Alignment:
Q  122 tactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttattttt 200  Q
    ||||| ||||||||| |||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||    
T  27707441 tactccctccgtttcgaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttattttt 27707363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 182 - 257
Target Start/End: Original strand, 37780997 - 37781072
Alignment:
Q  182 aataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcattcta 257  Q
    |||||||||| ||||||||||||||||| | ||||| |||||||||||||| ||||||||||||||||||||||||    
T  37780997 aataaattttattatttttgatgaaattctgtgtgttttttctataatactattaaccatttattatttcattcta 37781072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 173 - 250
Target Start/End: Complemental strand, 1455374 - 1455297
Alignment:
Q  173 aagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattattt 250  Q
    |||||| | |||||||||||||||||||||| ||||||| ||||| | ||||||||| ||||| ||||||||||||||    
T  1455374 aagaaatcaaataaattttgttatttttgataaaattatttgtgtttcttctataattctcttcaccatttattattt 1455297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 259
Target Start/End: Complemental strand, 19897144 - 19897067
Alignment:
Q  182 aataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcattctatt 259  Q
    ||||||||||||||||||| |||||||| | ||||| ||||||||||||| ||||  | |||||||||||||||||||    
T  19897144 aataaattttgttattttttatgaaattctttgtgttttttctataatacccttactcttttattatttcattctatt 19897067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 175
Target Start/End: Original strand, 12094581 - 12094635
Alignment:
Q  121 atactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaag 175  Q
    |||||| |||||||||||||||||||||||||||| |||||||| ||||||||||    
T  12094581 atactccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 12094635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 250
Target Start/End: Original strand, 44522491 - 44522567
Alignment:
Q  172 caagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattattt 250  Q
    ||||||| | |||||||||| |||||||| ||||||| ||  |||| |||||||||||||| |||||||||||||||||    
T  44522491 caagaaatcaaataaattttattattttttatgaaatcat--gtgttttttctataatacttttaaccatttattattt 44522567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 175
Target Start/End: Complemental strand, 44277509 - 44277455
Alignment:
Q  121 atactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaag 175  Q
    |||||| ||||||||||||||||||||| |||||| |||||||| ||||||||||    
T  44277509 atactccctccgtttcaaaatacatgtctattttggagaaattgcagtaaccaag 44277455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 175
Target Start/End: Original strand, 19911509 - 19911562
Alignment:
Q  122 tactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaag 175  Q
    ||||| |||||||||||||||||||| ||||||| |||||||| ||||||||||    
T  19911509 tactccctccgtttcaaaatacatgttcattttggagaaattgcagtaaccaag 19911562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 259
Target Start/End: Original strand, 24064284 - 24064361
Alignment:
Q  182 aataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcattctatt 259  Q
    ||||||||||||||| ||| || |||||   ||||| ||||||||||||| |||| ||||||||||||| ||||||||    
T  24064284 aataaattttgttatattttataaaattcactgtgttttttctataatacccttacccatttattattttattctatt 24064361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 209
Target Start/End: Original strand, 37293435 - 37293524
Alignment:
Q  120 aatactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaatt 209  Q
    ||||||| |||||||||| ||||| |||||||||||||||||||  |   |||||| || | ||||||| |||| |||||||||||||||    
T  37293435 aatactccctccgtttcacaatacttgtccattttgaagaaattacacataccaaggaatcaaataaatgttgtcatttttgatgaaatt 37293524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 259
Target Start/End: Complemental strand, 52805243 - 52805166
Alignment:
Q  182 aataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcattctatt 259  Q
    |||||||||||| ||||||||||||||| | ||  | ||||||||||||||||||  |||||||||||| ||| ||||    
T  52805243 aataaattttgtcatttttgatgaaattgtttgcattttttctataatactcttacacatttattattttattatatt 52805166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 175
Target Start/End: Original strand, 38805245 - 38805298
Alignment:
Q  122 tactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaag 175  Q
    ||||| |||||||| ||||||||||||||||||  |||||||| ||||||||||    
T  38805245 tactccctccgttttaaaatacatgtccattttagagaaattgcagtaaccaag 38805298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 163
Target Start/End: Original strand, 44276775 - 44276816
Alignment:
Q  122 tactctctccgtttcaaaatacatgtccattttgaagaaatt 163  Q
    |||||||||||||||||||||||||||||||||  |||||||    
T  44276775 tactctctccgtttcaaaatacatgtccattttagagaaatt 44276816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 207
Target Start/End: Complemental strand, 48820512 - 48820444
Alignment:
Q  139 aatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaa 207  Q
    |||||||||  |||||| |||||||   ||| |||| ||||| ||||||||||||||||||||||||||    
T  48820512 aatacatgtttattttggagaaattacggtatccaataaaccaaataaattttgttatttttgatgaaa 48820444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 260
Target Start/End: Original strand, 48963223 - 48963259
Alignment:
Q  224 tataatactcttaaccatttattatttcattctattt 260  Q
    ||||||| |||||||||||||||||||||||||||||    
T  48963223 tataataatcttaaccatttattatttcattctattt 48963259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 163
Target Start/End: Complemental strand, 19912217 - 19912174
Alignment:
Q  120 aatactctctccgtttcaaaatacatgtccattttgaagaaatt 163  Q
    ||||||| |||||||||||||||||||||||||||  |||||||    
T  19912217 aatactccctccgtttcaaaatacatgtccattttagagaaatt 19912174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 163
Target Start/End: Complemental strand, 38806384 - 38806341
Alignment:
Q  120 aatactctctccgtttcaaaatacatgtccattttgaagaaatt 163  Q
    ||||||| |||||||||||||||||||||||||||  |||||||    
T  38806384 aatactccctccgtttcaaaatacatgtccattttagagaaatt 38806341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 18356069 - 18356007
Alignment:
Q  197 ttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcattctatt 259  Q
    ||||| ||||||| | ||||| ||||||||||||| ||||  ||||||| |||||||||||||    
T  18356069 ttttggtgaaattctttgtgttttttctataatacccttactcatttatcatttcattctatt 18356007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 259
Target Start/End: Original strand, 54086577 - 54086690
Alignment:
Q  145 tgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccattta 244  Q
    |||||||||||||||||||  |    ||||| || | ||||||| |||| ||| ||||||||||| | ||| | ||||||||||||| ||||  || |||    
T  54086577 tgtccattttgaagaaattacacatgccaaggaatcaaataaatgttgtcattattgatgaaattctttgtattttttctataatacccttactca-tta 54086675  T
Q  245 ttatttcattctatt 259  Q
    |||||||||||||||    
T  54086676 ttatttcattctatt 54086690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 260
Target Start/End: Complemental strand, 27707172 - 27707127
Alignment:
Q  215 tgtgttttctataatactcttaaccatttattatttcattctattt 260  Q
    ||||||||||||||||  ||||||||||||||||||| || |||||    
T  27707172 tgtgttttctataatatccttaaccatttattatttctttttattt 27707127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 150
Target Start/End: Original strand, 21797556 - 21797584
Alignment:
Q  122 tactctctccgtttcaaaatacatgtcca 150  Q
    |||||||||||||||||||||||||||||    
T  21797556 tactctctccgtttcaaaatacatgtcca 21797584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 52009229 - 52009189
Alignment:
Q  219 ttttctataatactcttaaccatttattatttcattctatt 259  Q
    ||||||||||||| |||||| ||||||||||| ||||||||    
T  52009229 ttttctataatacacttaactatttattattttattctatt 52009189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 7e-55; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 122 - 266
Target Start/End: Complemental strand, 24772182 - 24772038
Alignment:
Q  122 tactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttt 221  Q
    ||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||| ||||| |||    
T  24772182 tactccctccgtttcaaaatacatgtccattttgaagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaattatgtgtgtattt 24772083  T
Q  222 tctataatactcttaaccatttattatttcattctatttcttctc 266  Q
    |||||||||| |||||||||||||||||| ||||||||| |||||    
T  24772082 tctataatacccttaaccatttattattttattctattttttctc 24772038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 123 - 260
Target Start/End: Complemental strand, 27211240 - 27211103
Alignment:
Q  123 actctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgtttt 222  Q
    |||| |||||||||||||||||||||||||||| |||||||| | ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  27211240 actccctccgtttcaaaatacatgtccattttggagaaattgcaataaccaagaaaccaaataaattttgttatttttgaggaaattatatgtgtgtttt 27211141  T
Q  223 ctataatactcttaaccatttattatttcattctattt 260  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  27211140 ctataatacccttaaccatttattattttattctattt 27211103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 120 - 260
Target Start/End: Original strand, 46771635 - 46771775
Alignment:
Q  120 aatactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgt 219  Q
    |||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||   |||||||||||||||||||||||||||||| |||||||    
T  46771635 aatactctatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaattaaataaattttgttatttttgatgaaattatgtgtgtgt 46771734  T
Q  220 tttctataatactcttaaccatttattatttcattctattt 260  Q
    |||||||||||| |||||||||||||| |||||||||||||    
T  46771735 tttctataatacccttaaccatttattttttcattctattt 46771775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 122 - 254
Target Start/End: Original strand, 284333 - 284465
Alignment:
Q  122 tactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttt 221  Q
    ||||| |||||||||||||||||||||||||||| |||||||| | ||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  284333 tactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatatgtgtgttt 284432  T
Q  222 tctataatactcttaaccatttattatttcatt 254  Q
    |||||||||| ||||| ||||||||||||||||    
T  284433 tctataatacccttaatcatttattatttcatt 284465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 133 - 265
Target Start/End: Original strand, 23526251 - 23526383
Alignment:
Q  133 tttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctataatact 232  Q
    ||||||||||||||| ||||||| |||||||| ||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||     
T  23526251 tttcaaaatacatgttcattttggagaaattgcagtaatcaagaaaccaaataaattttgttatttttgatgaaattatgtgtgtgttttctataatacc 23526350  T
Q  233 cttaaccatttattatttcattctatttcttct 265  Q
    |||||||||||||||||||||||||||| ||||    
T  23526351 cttaaccatttattatttcattctattttttct 23526383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 122 - 260
Target Start/End: Complemental strand, 23045556 - 23045418
Alignment:
Q  122 tactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttt 221  Q
    ||||| |||||||||||||||||||||||||||| |||||||| | ||||||||||||| |||||||||||||||||||||||||| ||| |||||||||    
T  23045556 tactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 23045457  T
Q  222 tctataatactcttaaccatttattatttcattctattt 260  Q
    |||||||||| ||||| |||||||||||||||| |||||    
T  23045456 tctataatacccttaatcatttattatttcattttattt 23045418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 121 - 260
Target Start/End: Complemental strand, 40783935 - 40783796
Alignment:
Q  121 atactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgtt 220  Q
    |||||| |||||||||||||||||||| ||||||| |||||||| | ||||||||||| | |||||||||||||||||||||||||| ||| ||||||||    
T  40783935 atactccctccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaatcaaataaattttgttatttttgatgaaaatatgtgtgtgtt 40783836  T
Q  221 ttctataatactcttaaccatttattatttcattctattt 260  Q
    ||||||||||| ||||| |||||||||||||||| |||||    
T  40783835 ttctataatacccttaatcatttattatttcattttattt 40783796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 122 - 260
Target Start/End: Original strand, 321626 - 321764
Alignment:
Q  122 tactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttt 221  Q
    ||||| |||||||||||||||||||| ||||||| |||||||| | ||||||||||||| |||||||||||||||||||||||||| ||| |||||||||    
T  321626 tactccctccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 321725  T
Q  222 tctataatactcttaaccatttattatttcattctattt 260  Q
    |||||||||  ||||| |||||||||||||||| |||||    
T  321726 tctataatatccttaatcatttattatttcattttattt 321764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 129 - 260
Target Start/End: Complemental strand, 47038120 - 47037991
Alignment:
Q  129 tccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctataa 228  Q
    ||||||||||||||||||||||||||| |||||||| | |||| |||||| | ||||||||||||||||||||||||||  |||||||||||||||||||    
T  47038120 tccgtttcaaaatacatgtccattttggagaaattgtactaactaagaaatcaaataaattttgttatttttgatgaaa--atatgtgtgttttctataa 47038023  T
Q  229 tactcttaaccatttattatttcattctattt 260  Q
    ||| ||||| |||||||||||||||| |||||    
T  47038022 tacccttaatcatttattatttcattttattt 47037991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 142 - 266
Target Start/End: Original strand, 33082765 - 33082889
Alignment:
Q  142 acatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccat 241  Q
    ||||||| |||||| |||||||| | ||||||||||| | |||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||    
T  33082765 acatgtctattttggagaaattgcactaaccaagaaatcaaataaattttgttatttttgatgaaattatgtgtgtattttctataatacccttaaccat 33082864  T
Q  242 ttattatttcattctatttcttctc 266  Q
    ||||||||| ||||||||| |||||    
T  33082865 ttattattttattctattttttctc 33082889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 137 - 266
Target Start/End: Complemental strand, 52037382 - 52037255
Alignment:
Q  137 aaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctataatactctta 236  Q
    ||||||||||||||||||  |||||||| | || |||| ||||| |||||||||| ||||||||||| |||||||  |||||||||||||||||||||||    
T  52037382 aaaatacatgtccattttagagaaattgcattatccaaaaaaccaaataaattttattatttttgataaaattat--gtgtgttttctataatactctta 52037285  T
Q  237 accatttattatttcattctatttcttctc 266  Q
    |||||||||||||||||||||||| |||||    
T  52037284 accatttattatttcattctattttttctc 52037255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 129 - 260
Target Start/End: Original strand, 1749314 - 1749445
Alignment:
Q  129 tccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctataa 228  Q
    ||||||| ||||||||| |||||||  || ||||   ||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  1749314 tccgttttaaaatacatttccatttaaaaaaaatcacagtaatcaagaaatcaaataaattttgttatttttgatgaaattatatgtgtgttttctataa 1749413  T
Q  229 tactcttaaccatttattatttcattctattt 260  Q
    ||   ||||||||||||||||| |||||||||    
T  1749414 tagcattaaccatttattattttattctattt 1749445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 182 - 250
Target Start/End: Original strand, 7765073 - 7765141
Alignment:
Q  182 aataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattattt 250  Q
    |||||||||||||||||||| |||||||||||||||||||||  |||||| | ||||||||||||||||    
T  7765073 aataaattttgttatttttggtgaaattatatgtgtgttttccgtaatacccataaccatttattattt 7765141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 173 - 250
Target Start/End: Complemental strand, 1838053 - 1837978
Alignment:
Q  173 aagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattattt 250  Q
    |||||| | |||||||||||||||||||||||||||  ||||||| ||||||||||||| |||| |||||||||||||    
T  1838053 aagaaatcaaataaattttgttatttttgatgaaat--tatgtgttttttctataatacccttacccatttattattt 1837978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 259
Target Start/End: Original strand, 18396755 - 18396832
Alignment:
Q  182 aataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcattctatt 259  Q
    ||||||||||||||||||| |||||||||| ||||  ||||||||||||   ||||||||| ||||||||||||||||    
T  18396755 aataaattttgttattttttatgaaattatgtgtggtttttctataatatatttaaccattcattatttcattctatt 18396832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 40562797 - 40562733
Alignment:
Q  182 aataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttatta 247  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||  ||||||||||||||    
T  40562797 aataaattttgttatttttgat-aaattatatatgtgttttctataataccattaaccatttatta 40562733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 119 - 175
Target Start/End: Original strand, 9588667 - 9588723
Alignment:
Q  119 gaatactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaag 175  Q
    |||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||    
T  9588667 gaatactccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 9588723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 259
Target Start/End: Original strand, 3657125 - 3657212
Alignment:
Q  170 accaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcattctatt 259  Q
    ||||||||| | ||||||||||||||||||| |||||||| | | ||| ||||||||||||  ||||||||||||  |||||||||||||    
T  3657125 accaagaaatcaaataaattttgttatttttaatgaaattttgtatgttttttctataataaccttaaccattta--atttcattctatt 3657212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 175
Target Start/End: Original strand, 3943059 - 3943113
Alignment:
Q  121 atactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaag 175  Q
    |||||| |||||||||||||||||||||||||||| |||||||| ||||||||||    
T  3943059 atactccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 3943113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 259
Target Start/End: Original strand, 52478016 - 52478103
Alignment:
Q  170 accaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcattctatt 259  Q
    ||||||||| | |||||||||||||||||||||||||||  | ||||| ||||||||||||  |||||  |||||| |||||||||||||    
T  52478016 accaagaaatcaaataaattttgttatttttgatgaaat--tttgtgttttttctataataaccttaaaaatttatcatttcattctatt 52478103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 172 - 259
Target Start/End: Complemental strand, 27143239 - 27143151
Alignment:
Q  172 caagaaacccaataaattttgttatttttgatgaaattatatgtg-tgttttctataatactcttaaccatttattatttcattctatt 259  Q
    ||||||| | ||||||||||||||||||||| ||||||   || | | |||||||||||| |||||| |||||||||||||||||||||    
T  27143239 caagaaatcaaataaattttgttatttttgaggaaattccgtgagtttttttctataatattcttaatcatttattatttcattctatt 27143151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 230
Target Start/End: Complemental strand, 51065033 - 51064925
Alignment:
Q  122 tactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttt 221  Q
    ||||| |||||||||| ||||| |||||||||| ||||||||  |   |||||| || | ||||||| |||| ||||||||||||||| | ||||| |||    
T  51065033 tactccctccgtttcacaatacttgtccattttaaagaaattacacataccaaggaatcaaataaatgttgtcatttttgatgaaattctttgtgttttt 51064934  T
Q  222 tctataata 230  Q
    |||||||||    
T  51064933 tctataata 51064925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 259
Target Start/End: Complemental strand, 31004012 - 31003926
Alignment:
Q  170 accaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcattctatt 259  Q
    ||||||||| | ||||||||||   |||||| |||||| ||| ||| | ||||||||||||| |||||||||||||||||| ||||||||    
T  31004012 accaagaaatcaaataaatttt---atttttaatgaaagtatgtgtattttttctataatacccttaaccatttattatttaattctatt 31003926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 13985037 - 13984991
Alignment:
Q  129 tccgtttcaaaatacatgtccattttgaagaaattggagtaaccaag 175  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||    
T  13985037 tccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 13984991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 31061662 - 31061594
Alignment:
Q  190 ttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcattctatt 259  Q
    ||||||||||| |||||||||| ||||| ||||| ||||||| | |||||||||||||||||||| ||||    
T  31061662 ttgttattttttatgaaattatgtgtgttttttccataatac-cctaaccatttattatttcattatatt 31061594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 175
Target Start/End: Original strand, 41959078 - 41959131
Alignment:
Q  122 tactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaag 175  Q
    ||||| |||||||||||||||||||||||||||| |||||||| | ||||||||    
T  41959078 tactccctccgtttcaaaatacatgtccattttggagaaattgcaataaccaag 41959131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 163
Target Start/End: Original strand, 44227846 - 44227889
Alignment:
Q  120 aatactctctccgtttcaaaatacatgtccattttgaagaaatt 163  Q
    ||||||| |||||||||||||||||||||||||||| |||||||    
T  44227846 aatactccctccgtttcaaaatacatgtccattttggagaaatt 44227889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 259
Target Start/End: Complemental strand, 14351989 - 14351900
Alignment:
Q  170 accaagaaacccaataaattttgttatttttgatgaaattat-atgtgtgttttctataatactcttaaccatttattatttcattctatt 259  Q
    ||||||||| | |||||||||||||||||||||||| ||| | |||| | ||||||||||||  | |||||||||| |||||| |||||||    
T  14351989 accaagaaaacaaataaattttgttatttttgatgatattctaatgt-tattttctataatatccgtaaccatttaatatttcgttctatt 14351900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 251
Target Start/End: Complemental strand, 40261501 - 40261419
Alignment:
Q  170 accaagaaacccaataaattttgttatttttgatgaaattatatgtg-tgttttctataatactcttaaccatttattatttc 251  Q
    ||||||||| | |||||||||||||| |||||||||||||   |||| | ||||||||||||   ||||||||||||||||||    
T  40261501 accaagaaatcaaataaattttgttaattttgatgaaattgcgtgtgtttttttctataatatcattaaccatttattatttc 40261419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 175
Target Start/End: Original strand, 1168369 - 1168414
Alignment:
Q  130 ccgtttcaaaatacatgtccattttgaagaaattggagtaaccaag 175  Q
    |||||||||||||||||||  |||||||||||||| ||||||||||    
T  1168369 ccgtttcaaaatacatgtcgtttttgaagaaattgcagtaaccaag 1168414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 24876633 - 24876699
Alignment:
Q  190 ttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcattctatt 259  Q
    |||||||||||||||| ||||| |||   |||||||||||||  || ||||||||| |||||||||||||    
T  24876633 ttgttatttttgatgatattatgtgt---ttttctataatacctttgaccatttatcatttcattctatt 24876699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 163
Target Start/End: Complemental strand, 41959852 - 41959809
Alignment:
Q  120 aatactctctccgtttcaaaatacatgtccattttgaagaaatt 163  Q
    ||||||| |||||||||||||||||||||||||||  |||||||    
T  41959852 aatactccctccgtttcaaaatacatgtccattttagagaaatt 41959809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 175
Target Start/End: Complemental strand, 44228275 - 44228228
Alignment:
Q  128 ctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaag 175  Q
    |||| ||||||||||||||||||||||| ||||||||  |||||||||    
T  44228275 ctccatttcaaaatacatgtccattttggagaaattgctgtaaccaag 44228228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 259
Target Start/End: Complemental strand, 34458950 - 34458863
Alignment:
Q  170 accaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcattctatt 259  Q
    ||||||||| | ||||||||||  ||||||| |||||||| |  |||| ||||||||||||  ||||   ||||||||||||||||||||    
T  34458950 accaagaaatcaaataaatttttctattttttatgaaattct--gtgttttttctataataaccttactaatttattatttcattctatt 34458863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 163
Target Start/End: Complemental strand, 3943804 - 3943763
Alignment:
Q  122 tactctctccgtttcaaaatacatgtccattttgaagaaatt 163  Q
    ||||| |||||||||||||||||||||||||||  |||||||    
T  3943804 tactccctccgtttcaaaatacatgtccattttagagaaatt 3943763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 121 - 154
Target Start/End: Original strand, 10845480 - 10845513
Alignment:
Q  121 atactctctccgtttcaaaatacatgtccatttt 154  Q
    |||||| |||||||||||||||||||||||||||    
T  10845480 atactcactccgtttcaaaatacatgtccatttt 10845513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 40564293 - 40564241
Alignment:
Q  136 caaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaat 188  Q
    ||||||| |||||||||||| | |||| | ||||||||||||||| |||||||    
T  40564293 caaaatatatgtccattttggaaaaatcgcagtaaccaagaaaccaaataaat 40564241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 122 - 260
Target Start/End: Original strand, 1102503 - 1102641
Alignment:
Q  122 tactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttt 221  Q
    ||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||    
T  1102503 tactccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 1102602  T
Q  222 tctataatactcttaaccatttattatttcattctattt 260  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  1102603 tctataatacccttaaccatttattatttcattttattt 1102641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 121 - 266
Target Start/End: Complemental strand, 12970017 - 12969872
Alignment:
Q  121 atactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgtt 220  Q
    |||||| |||||||||||||||||||||||||||| |||||||| | ||||||||||||| |||||||||||||||||||||||||||||| ||| | ||    
T  12970017 atactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaattatgtgtatatt 12969918  T
Q  221 ttctataatactcttaaccatttattatttcattctatttcttctc 266  Q
    ||||||||||| |||||||||||||||||| ||||||||| |||||    
T  12969917 ttctataatacccttaaccatttattattttattctattttttctc 12969872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 119 - 266
Target Start/End: Original strand, 3518905 - 3519052
Alignment:
Q  119 gaatactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtg 218  Q
    |||||||| |||||||||||||||||||||||||||| |||||||| | ||||||||||||| |||||||||||||||||||||||||| ||| ||||||    
T  3518905 gaatactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtg 3519004  T
Q  219 ttttctataatactcttaaccatttattatttcattctatttcttctc 266  Q
    ||||||||||||| |||||  ||||||||||||||| ||||| |||||    
T  3519005 ttttctataatacccttaataatttattatttcattttattttttctc 3519052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 122 - 260
Target Start/End: Original strand, 39938170 - 39938308
Alignment:
Q  122 tactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttt 221  Q
    ||||| ||||||||||||||||||| |||||||| |||||||| | ||||||||||||| |||||||||||||||||||||||||| ||| |||||||||    
T  39938170 tactccctccgtttcaaaatacatgaccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 39938269  T
Q  222 tctataatactcttaaccatttattatttcattctattt 260  Q
    |||||||||| ||||| |||||||||||||||| |||||    
T  39938270 tctataatacccttaatcatttattatttcattttattt 39938308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 123 - 260
Target Start/End: Original strand, 23366790 - 23366927
Alignment:
Q  123 actctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgtttt 222  Q
    |||| |||||||||||||||||||||||||||| |||||||| | ||||||||||||| ||||||||||||||||||| |||||| ||| ||||||||||    
T  23366790 actccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttattttttatgaaaatatgtgtgtgtttt 23366889  T
Q  223 ctataatactcttaaccatttattatttcattctattt 260  Q
    ||||||||| ||||| |||||||||||||||| |||||    
T  23366890 ctataatacccttaatcatttattatttcattttattt 23366927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 122 - 249
Target Start/End: Complemental strand, 37674014 - 37673887
Alignment:
Q  122 tactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttt 221  Q
    ||||| |||||||||||||||||||| ||||||| |||||||| | ||||||||||| | |||||||||||||||||||||||||| ||| |||||||||    
T  37674014 tactccctccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaatcaaataaattttgttatttttgatgaaaatatgtgtgtgttt 37673915  T
Q  222 tctataatactcttaaccatttattatt 249  Q
    |||||||||| ||||| |||||||||||    
T  37673914 tctataatacccttaatcatttattatt 37673887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 150 - 260
Target Start/End: Original strand, 1646317 - 1646425
Alignment:
Q  150 attttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatt 249  Q
    |||||| |||||||| || |||||||||||  ||||||||||||||||||||||||||  |||||||||||||||||||||| ||||| |||||||||||    
T  1646317 attttggagaaattgcagcaaccaagaaactaaataaattttgttatttttgatgaaa--atatgtgtgttttctataatacccttaatcatttattatt 1646414  T
Q  250 tcattctattt 260  Q
    ||||| |||||    
T  1646415 tcattttattt 1646425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 259
Target Start/End: Original strand, 18078116 - 18078193
Alignment:
Q  182 aataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcattctatt 259  Q
    ||||||||||||||||||||||||| || | ||||  ||||||||||||||||| ||||||||||| |||||||||||    
T  18078116 aataaattttgttatttttgatgaatttttttgtggattttctataatactcttgaccatttattaattcattctatt 18078193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 199 - 266
Target Start/End: Complemental strand, 22388335 - 22388268
Alignment:
Q  199 ttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcattctatttcttctc 266  Q
    ||||||||| ||| ||||||||||||||||||| ||||| |||||||||||||||| ||||| |||||    
T  22388335 ttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattttttctc 22388268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 259
Target Start/End: Original strand, 14779839 - 14779914
Alignment:
Q  182 aataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcattctatt 259  Q
    |||||||||| ||||||||||||||||||| ||||| ||||||||||||  ||||  |||||||||||||||| ||||    
T  14779839 aataaatttttttatttttgatgaaattatttgtgttttttctataata--cttactcatttattatttcattatatt 14779914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 122 - 175
Target Start/End: Complemental strand, 34224431 - 34224378
Alignment:
Q  122 tactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaag 175  Q
    ||||| |||||||||||||||||||||||||||| |||||||| ||||||||||    
T  34224431 tactccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 34224378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 35179152 - 35179090
Alignment:
Q  182 aataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccattta 244  Q
    |||||||||||||||||||||||||||| | ||||| ||||||||||||  |||||| |||||    
T  35179152 aataaattttgttatttttgatgaaattttgtgtgttttttctataataaccttaactattta 35179090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 259
Target Start/End: Complemental strand, 39562102 - 39562027
Alignment:
Q  182 aataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcattctatt 259  Q
    ||||||||||||||||||||| |||||||| | ||| |||||  |||||| |||||||||||||||||  ||||||||    
T  39562102 aataaattttgttatttttgaagaaattatttttgttttttc--taatacccttaaccatttattattgtattctatt 39562027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 270
Target Start/End: Original strand, 4917851 - 4917910
Alignment:
Q  211 tatgtgtgttttctataatactcttaaccatttattatttcattctatttcttctcactc 270  Q
    ||||||| |||||||||||| ||||||  ||||||||||||||||||||  |||||||||    
T  4917851 tatgtgttttttctataataatcttaattatttattatttcattctattatttctcactc 4917910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 32840401 - 32840312
Alignment:
Q  173 aagaaacccaataaattttgttatttttgatgaaattatatgtgtgt---tttctataatactcttaaccatttattatttcattctatt 259  Q
    |||||| | |||||||||||||||||||||||||||| | ||| | |   ||||||||||||  ||| | ||||||||||||||||||||    
T  32840401 aagaaatcaaataaattttgttatttttgatgaaattctgtgtttttttctttctataataccattatcgatttattatttcattctatt 32840312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 259
Target Start/End: Original strand, 19976380 - 19976468
Alignment:
Q  170 accaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcattctatt 259  Q
    ||||||||| | ||||||||||| || ||||||| ||||||| ||| | ||||||||||||| |||| | ||||||||||| ||| ||||    
T  19976380 accaagaaatcaaataaattttggtacttttgataaaattatgtgt-ttttttctataatacccttacctatttattattttattatatt 19976468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 34242040 - 34242107
Alignment:
Q  185 aaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcatt 254  Q
    ||||||||||||||||||||||||  | ||||| |||| | ||| || |||| |||||||||||||||||    
T  34242040 aaattttgttatttttgatgaaat--tctgtgttttttttgtaacacccttacccatttattatttcatt 34242107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 14117819 - 14117753
Alignment:
Q  180 ccaataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattat 248  Q
    |||| ||||||||||| ||||||||||||  ||||| | ||| |||||||||||||||  |||||||||    
T  14117819 ccaaaaaattttgttacttttgatgaaat--tatgtctttttcctataatactcttaagtatttattat 14117753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 150
Target Start/End: Original strand, 44365157 - 44365185
Alignment:
Q  122 tactctctccgtttcaaaatacatgtcca 150  Q
    |||||||||||||||||||||||||||||    
T  44365157 tactctctccgtttcaaaatacatgtcca 44365185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 121 - 270
Target Start/End: Complemental strand, 37900902 - 37900753
Alignment:
Q  121 atactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgtt 220  Q
    |||||| |||||||||||||||||  ||||||||| |||||||| ||||||||||||||  ||||||||||| |||||||||||||||||||||||||||    
T  37900902 atactccctccgtttcaaaatacacatccattttggagaaattgcagtaaccaagaaactaaataaattttgatatttttgatgaaattatatgtgtgtt 37900803  T
Q  221 ttctataatactcttaaccatttattatttcattctatttcttctcactc 270  Q
    ||||||||||| |||||||||||||||||||||||||||| || ||||||    
T  37900802 ttctataatacccttaaccatttattatttcattctattttttttcactc 37900753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 122 - 260
Target Start/End: Complemental strand, 12807130 - 12806992
Alignment:
Q  122 tactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttt 221  Q
    ||||| |||||||||||||||||||||||||||| |||||||| | ||||||||||||| |||||||||||||||||||||||||| ||| |||||||||    
T  12807130 tactccctccgtttcaaaatacatgtccattttggagaaattgcattaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 12807031  T
Q  222 tctataatactcttaaccatttattatttcattctattt 260  Q
    |||||||||| ||||| |||||||||||||||| |||||    
T  12807030 tctataatacccttaatcatttattatttcattttattt 12806992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 122 - 260
Target Start/End: Original strand, 25773649 - 25773787
Alignment:
Q  122 tactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttt 221  Q
    ||||| |||||||||||||||||||||||||||| |||||||| | ||||||||||| | |||||||||||||||||||||||||| ||| |||||||||    
T  25773649 tactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaatcaaataaattttgttatttttgatgaaaatatgtgtgtgttt 25773748  T
Q  222 tctataatactcttaaccatttattatttcattctattt 260  Q
    |||||||||| ||||| |||||||||||||||| |||||    
T  25773749 tctataatacccttaatcatttattatttcattttattt 25773787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 133 - 266
Target Start/End: Complemental strand, 7277688 - 7277555
Alignment:
Q  133 tttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctataatact 232  Q
    |||||||||||||||| |||||| |||||||||||||||||| ||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||     
T  7277688 tttcaaaatacatgtctattttggagaaattggagtaaccaataaaccaaataaattttgttatttttgatcaaattatgtgtgtgttttctataatacc 7277589  T
Q  233 cttaaccatttattatttcattctatttcttctc 266  Q
     ||||||||||||||||||||| ||||| |||||    
T  7277588 tttaaccatttattatttcattatattttttctc 7277555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 122 - 260
Target Start/End: Complemental strand, 30720769 - 30720631
Alignment:
Q  122 tactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttt 221  Q
    ||||| |||||||||||||||||||||||||||| |||||||| | ||||||||||||| |||||||||||||||||||||||||| ||| |||||||||    
T  30720769 tactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 30720670  T
Q  222 tctataatactcttaaccatttattatttcattctattt 260  Q
    | |||||||| ||||| ||| |||||||||||| |||||    
T  30720669 tttataatacccttaatcatctattatttcattttattt 30720631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 120 - 260
Target Start/End: Complemental strand, 10285336 - 10285196
Alignment:
Q  120 aatactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgt 219  Q
    ||||||| ||||||||||||||| ||||| |||||| |||||||| | ||||||||||||  |||||||||||||||||||||||||| ||| |||||||    
T  10285336 aatactccctccgtttcaaaatagatgtctattttggagaaattgcattaaccaagaaactaaataaattttgttatttttgatgaaaatatgtgtgtgt 10285237  T
Q  220 tttctataatactcttaaccatttattatttcattctattt 260  Q
    |||||||||||| ||||| |||||||||||||||| |||||    
T  10285236 tttctataatacccttaatcatttattatttcattttattt 10285196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 129 - 260
Target Start/End: Complemental strand, 36561369 - 36561238
Alignment:
Q  129 tccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctataa 228  Q
    ||||||||||||||||||||||||||  | |||||| ||||| ||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||    
T  36561369 tccgtttcaaaatacatgtccattttagaaaaattgcagtaatcaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataa 36561270  T
Q  229 tactcttaaccatttattatttcattctattt 260  Q
    |||  ||||||||||||||||||||| |||||    
T  36561269 tacctttaaccatttattatttcattttattt 36561238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 129 - 260
Target Start/End: Complemental strand, 40886880 - 40886749
Alignment:
Q  129 tccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctataa 228  Q
    ||||||||||||||||||| ||||||| |||||||| | ||||||||||| | |||||||||||||||||||||||||| ||| ||||| ||||||||||    
T  40886880 tccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaatcgaataaattttgttatttttgatgaaaatatgtgtgtattttctataa 40886781  T
Q  229 tactcttaaccatttattatttcattctattt 260  Q
    ||| ||||| |||||||||||||||| |||||    
T  40886780 tacccttaatcatttattatttcattttattt 40886749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 168 - 266
Target Start/End: Complemental strand, 25683459 - 25683361
Alignment:
Q  168 taaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcattctatttcttctc 266  Q
    ||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||| |||||    
T  25683459 taaccaagaaaccaaataaattttgttatttttgataaaattatgtgtgtgttttctataatacccttaaccatttattattttattctattttttctc 25683361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 121 - 242
Target Start/End: Original strand, 16983257 - 16983380
Alignment:
Q  121 atactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataa--attttgttatttttgatgaaattatatgtgtg 218  Q
    |||||| ||| |||||||||||||||||||||||| |||||||| ||||||||||||||| |||||   |||| || ||||||||||||| ||||||||     
T  16983257 atactccctctgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataattttttttttttttttgatgaaatgatatgtgtt 16983356  T
Q  219 ttttctataatactcttaaccatt 242  Q
    ||||||| ||||| ||||||||||    
T  16983357 ttttctacaatacccttaaccatt 16983380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 170 - 259
Target Start/End: Complemental strand, 30403191 - 30403101
Alignment:
Q  170 accaagaaacccaataaattttgttatttttgatgaaattatatg-tgtgttttctataatactcttaaccatttattatttcattctatt 259  Q
    ||||||||||| |||||||||||||||||||||||||||| | || | | ||||||||||||||||||| ||||| |||||||||| ||||    
T  30403191 accaagaaaccaaataaattttgttatttttgatgaaattctgtgtttttttttctataatactcttaatcatttgttatttcattttatt 30403101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 247
Target Start/End: Complemental strand, 23098505 - 23098386
Alignment:
Q  120 aatactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgt 219  Q
    |||||||  ||||||||||| |||||||||| ||||||||||||        ||||||||  |||||||||||||||||||||||||||||| ||  |||    
T  23098505 aatactccatccgtttcaaa-tacatgtccaatttgaagaaatta-------caagaaactaaataaattttgttatttttgatgaaattatgtgcatgt 23098414  T
Q  220 tttctataatactcttaaccatttatta 247  Q
    || ||||||||| |||||||||||||||    
T  23098413 ttcctataatacccttaaccatttatta 23098386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 128 - 259
Target Start/End: Complemental strand, 734608 - 734478
Alignment:
Q  128 ctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctata 227  Q
    |||||||||| ||||| |||||||||||||||||||      |||||  || | |||||||||||| ||| ||||||||||| | ||||| |||||||||    
T  734608 ctccgtttcacaatacttgtccattttgaagaaattactcataccaaagaatcaaataaattttgtcattattgatgaaattctttgtgt-ttttctata 734510  T
Q  228 atactcttaaccatttattatttcattctatt 259  Q
    |||| ||||  |||||||||||||||||||||    
T  734509 atacccttactcatttattatttcattctatt 734478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 259
Target Start/End: Original strand, 39070882 - 39071020
Alignment:
Q  121 atactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgtt 220  Q
    |||||| |||||||||| ||||| ||| |||||||||||||||  |   |  ||| || | ||||||| |||| ||||||||||||||    ||||| ||    
T  39070882 atactccctccgtttcacaatacttgttcattttgaagaaattacacatattaaggaatcaaataaatgttgtcatttttgatgaaatctgttgtgtttt 39070981  T
Q  221 ttctataatactcttaaccatttattatttcattctatt 259  Q
    ||||||||||| ||||  |||||||||||||||||||||    
T  39070982 ttctataatacccttactcatttattatttcattctatt 39071020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 259
Target Start/End: Complemental strand, 1056498 - 1056422
Alignment:
Q  182 aataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcattctatt 259  Q
    ||||||||||||||||||| |||||||| | ||||| |||||||||||||| || | |||||||||||||||| ||||    
T  1056498 aataaattttgttatttttaatgaaattctttgtgt-ttttctataatactattgatcatttattatttcattatatt 1056422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 259
Target Start/End: Original strand, 11319565 - 11319696
Alignment:
Q  128 ctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctata 227  Q
    |||||||||| ||||  |||||||||||||||||||  |   || ||  || | ||||||| |||| |||||| |||||||| | ||| | |||||||||    
T  11319565 ctccgtttcacaatatttgtccattttgaagaaattacacatactaatgaatcaaataaatgttgtaattttttatgaaattctttgttttttttctata 11319664  T
Q  228 atactcttaaccatttattatttcattctatt 259  Q
    |||| ||||  |||||||||||||||||||||    
T  11319665 atacccttactcatttattatttcattctatt 11319696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 230
Target Start/End: Original strand, 11796449 - 11796559
Alignment:
Q  120 aatactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgt 219  Q
    ||||||| |||| ||||| | ||| ||||  |||||||||||||  ||  |||||||||   ||| |||||||||||||||||||||||| ||||||| |    
T  11796449 aatactccctccttttcacactacttgtcatttttgaagaaattacagataccaagaaattaaattaattttgttatttttgatgaaattctatgtgttt 11796548  T
Q  220 tttctataata 230  Q
     ||||||||||    
T  11796549 gttctataata 11796559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 259
Target Start/End: Original strand, 16054174 - 16054249
Alignment:
Q  182 aataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcattctatt 259  Q
    ||||||||||||||||||| |||||||| |  |||| ||||||||||||  ||| |||||||||||||| ||||||||    
T  16054174 aataaattttgttattttttatgaaatttt--gtgttttttctataatatccttgaccatttattattttattctatt 16054249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 15305265 - 15305216
Alignment:
Q  122 tactctctccgtttcaaaatacatgtccattttgaagaaattggagtaac 171  Q
    ||||| |||||||||||||||||||||||||||| |||||||| ||||||    
T  15305265 tactccctccgtttcaaaatacatgtccattttggagaaattgcagtaac 15305216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 257
Target Start/End: Original strand, 3763214 - 3763274
Alignment:
Q  197 ttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcattcta 257  Q
    |||||||| |||||| ||| | |||||||||||||||||||| ||||||||| ||||||||    
T  3763214 ttttgatggaattatttgtcttttttctataatactcttaactatttattatatcattcta 3763274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1431 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: scaffold1431
Description:

Target: scaffold1431; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 121 - 260
Target Start/End: Complemental strand, 177 - 38
Alignment:
Q  121 atactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgtt 220  Q
    ||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||| |||||||||||||||||||||||||| ||| ||||||||    
T  177 atactctctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtt 78  T
Q  221 ttctataatactcttaaccatttattatttcattctattt 260  Q
    ||||||||||| ||||| |||||||||||||||| |||||    
T  77 ttctataatacccttaatcatttattatttcattttattt 38  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 6e-52; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 121 - 260
Target Start/End: Complemental strand, 40122763 - 40122624
Alignment:
Q  121 atactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgtt 220  Q
    |||||| |||||||||||||||||||||||||||| |||||||| ||||||||| ||||| |||||||||||||||||||||||||| ||| ||||||||    
T  40122763 atactccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtt 40122664  T
Q  221 ttctataatactcttaaccatttattatttcattctattt 260  Q
    ||||||||||| |||||||||||||||||||||| |||||    
T  40122663 ttctataatacccttaaccatttattatttcattttattt 40122624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 121 - 260
Target Start/End: Original strand, 25704650 - 25704789
Alignment:
Q  121 atactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgtt 220  Q
    |||||| |||||||||||||||||||||||||||| |||||||| | ||||||||||||| |||||||||||||||||||||||||| ||| ||||||||    
T  25704650 atactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtt 25704749  T
Q  221 ttctataatactcttaaccatttattatttcattctattt 260  Q
    ||||||||||| ||||| |||||||||||||||| |||||    
T  25704750 ttctataatacccttaatcatttattatttcattttattt 25704789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 121 - 254
Target Start/End: Original strand, 21310424 - 21310557
Alignment:
Q  121 atactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgtt 220  Q
    |||||| |||||||||||||||||||||||||||| |||||||| | ||||||||||||| |||||||||||||||||||||||||| ||| ||||||||    
T  21310424 atactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtt 21310523  T
Q  221 ttctataatactcttaaccatttattatttcatt 254  Q
    ||||||||||| ||||| ||||||||||||||||    
T  21310524 ttctataatacccttaatcatttattatttcatt 21310557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 122 - 266
Target Start/End: Complemental strand, 20249289 - 20249146
Alignment:
Q  122 tactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttt 221  Q
    |||||||||||||||||||||||||||||||||| | |||||| | ||||||||||||| ||||||||||||||||||||| |||||||| |||||| ||    
T  20249289 tactctctccgtttcaaaatacatgtccattttggataaattgtattaaccaagaaaccaaataaattttgttatttttgaagaaattatgtgtgtg-tt 20249191  T
Q  222 tctataatactcttaaccatttattatttcattctatttcttctc 266  Q
    |||||||||| |||||||||||||||||| ||||||||| |||||    
T  20249190 tctataatacccttaaccatttattattttattctattttttctc 20249146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 120 - 260
Target Start/End: Complemental strand, 21661814 - 21661674
Alignment:
Q  120 aatactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgt 219  Q
    ||||||| |||| ||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||| ||||||||||||||| ||| |||||||    
T  21661814 aatactccctccctttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgt 21661715  T
Q  220 tttctataatactcttaaccatttattatttcattctattt 260  Q
    ||||||||||||  ||||||||||||||||||||| |||||    
T  21661714 tttctataatacctttaaccatttattatttcattttattt 21661674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 120 - 260
Target Start/End: Complemental strand, 21670578 - 21670438
Alignment:
Q  120 aatactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgt 219  Q
    ||||||| |||| ||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||| ||||||||||||||| ||| |||||||    
T  21670578 aatactccctccctttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaatttttttatttttgatgaaaatatgtgtgtgt 21670479  T
Q  220 tttctataatactcttaaccatttattatttcattctattt 260  Q
    ||||||||||||  ||||||||||||||||||||| |||||    
T  21670478 tttctataatacctttaaccatttattatttcattttattt 21670438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 120 - 260
Target Start/End: Complemental strand, 24706526 - 24706386
Alignment:
Q  120 aatactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgt 219  Q
    |||||||  ||||||||||||||||||||||||||| |||||||| | ||||||||||||| |||||||||||||||||||||||||| ||| |||||||    
T  24706526 aatactccatccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgt 24706427  T
Q  220 tttctataatactcttaaccatttattatttcattctattt 260  Q
    |||||||||||| ||||| |||||||||||||||| |||||    
T  24706426 tttctataatacccttaatcatttattatttcattttattt 24706386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 121 - 266
Target Start/End: Original strand, 12071560 - 12071705
Alignment:
Q  121 atactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgtt 220  Q
    |||||| |||||||||||||||||||||||||||| |||||||| | ||||||| ||||  |||||||||||||||||||||||||| ||| ||||||||    
T  12071560 atactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaataaactaaataaattttgttatttttgatgaaaatatgtgtgtgtt 12071659  T
Q  221 ttctataatactcttaaccatttattatttcattctatttcttctc 266  Q
    ||||||||||| ||||| |||||||||||||||| ||||| |||||    
T  12071660 ttctataatacccttaatcatttattatttcattttattttttctc 12071705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 129 - 266
Target Start/End: Complemental strand, 22321537 - 22321400
Alignment:
Q  129 tccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctataa 228  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||||||||| ||||||||||||||||||| |||||| ||| ||||||||||||||||    
T  22321537 tccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttattttttatgaaaatatgtgtgtgttttctataa 22321438  T
Q  229 tactcttaaccatttattatttcattctatttcttctc 266  Q
    ||| ||||| |||||||||||||||| ||||| |||||    
T  22321437 tacccttaatcatttattatttcattttattttttctc 22321400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 121 - 260
Target Start/End: Original strand, 14261043 - 14261182
Alignment:
Q  121 atactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgtt 220  Q
    |||||| |||||||||||||||||||||||||||| |||||||| | ||||||||||||| |||||||||||||||||||||| ||| ||| ||||||||    
T  14261043 atactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgataaaaatatgtgtgtgtt 14261142  T
Q  221 ttctataatactcttaaccatttattatttcattctattt 260  Q
    ||||||||||| |||||  ||||||||||||||| |||||    
T  14261143 ttctataatacccttaataatttattatttcattttattt 14261182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 129 - 260
Target Start/End: Original strand, 44568844 - 44568975
Alignment:
Q  129 tccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctataa 228  Q
    |||||||||||||||||||||||||||||||||||| | ||||||| ||||| ||||||||||||||||||| |||||| ||| ||||||||||||||||    
T  44568844 tccgtttcaaaatacatgtccattttgaagaaattgcactaaccaaaaaaccaaataaattttgttattttttatgaaaatatgtgtgtgttttctataa 44568943  T
Q  229 tactcttaaccatttattatttcattctattt 260  Q
    ||| ||||| |||||||||||||||| |||||    
T  44568944 tacccttaatcatttattatttcattttattt 44568975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 122 - 266
Target Start/End: Complemental strand, 34324860 - 34324715
Alignment:
Q  122 tactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaat-aaattttgttatttttgatgaaattatatgtgtgtt 220  Q
    ||||| |||||||||||||||||||||||||||| |||||||| | ||||||||||||  ||| ||||||||||||||||||||||| ||| ||||||||    
T  34324860 tactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaactaaattaaattttgttatttttgatgaaaatatgtgtgtgtt 34324761  T
Q  221 ttctataatactcttaaccatttattatttcattctatttcttctc 266  Q
    ||||||||||| ||||| |||||||||||||||| ||||| |||||    
T  34324760 ttctataatacccttaatcatttattatttcattttattttttctc 34324715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 120 - 260
Target Start/End: Original strand, 50767862 - 50768002
Alignment:
Q  120 aatactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgt 219  Q
    |||||||  ||||||||||||||||| | ||||||  |||||||| | ||| ||||||||| |||||||||||||||||||||||||| |||||||||||    
T  50767862 aatactcattccgtttcaaaatacatattcattttagagaaattgcactaatcaagaaaccaaataaattttgttatttttgatgaaaatatatgtgtgt 50767961  T
Q  220 tttctataatactcttaaccatttattatttcattctattt 260  Q
    |||||||||||| |||||  ||||||||||||||| |||||    
T  50767962 tttctataatacccttaataatttattatttcattttattt 50768002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 128 - 260
Target Start/End: Original strand, 31892244 - 31892372
Alignment:
Q  128 ctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctata 227  Q
    |||||| ||||||||||||| |||||| ||||||||| ||||||||||||| | |||||||||| ||||||||||||||||||    |||||||||||||    
T  31892244 ctccgtatcaaaatacatgttcattttaaagaaattgcagtaaccaagaaatcaaataaattttattatttttgatgaaatta----tgtgttttctata 31892339  T
Q  228 atactcttaaccatttattatttcattctattt 260  Q
    ||||  || ||||||||||||||||||||||||    
T  31892340 atacctttgaccatttattatttcattctattt 31892372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 1988065 - 1988151
Alignment:
Q  152 tttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaac 238  Q
    |||| |||||||| |||||| |||||| | |||||||||| ||||||||||||||||||| | ||||||||||||||||| ||||||    
T  1988065 tttggagaaattgcagtaactaagaaatcaaataaattttattatttttgatgaaattatgtatgtgttttctataatacccttaac 1988151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 259
Target Start/End: Complemental strand, 20714565 - 20714488
Alignment:
Q  182 aataaattttgttatttttgatgaaattatatgtgtg-ttttctataatactcttaaccatttattatttcattctatt 259  Q
    |||||||||||||||||||||||||| ||| |||||| ||||||||||||| |||||||||||||||||||||| ||||    
T  20714565 aataaattttgttatttttgatgaaactatgtgtgtgtttttctataatac-cttaaccatttattatttcattatatt 20714488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 21064834 - 21064898
Alignment:
Q  194 tatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcattctattt 260  Q
    ||||||||||||||||||  ||||||||| ||||||||||||||| |||||||||||||||||||||    
T  21064834 tatttttgatgaaattat--gtgtgttttttataatactcttaactatttattatttcattctattt 21064898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 122 - 251
Target Start/End: Complemental strand, 26676843 - 26676714
Alignment:
Q  122 tactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttt 221  Q
    |||||||||||||||| ||||| | |||||||||||||||||  |   |||||| || | ||||||| |||| |||||| |||||||| |  |||| |||    
T  26676843 tactctctccgtttcacaatacttatccattttgaagaaattacacataccaaggaatcaaataaatgttgtcattttttatgaaattcttcgtgttttt 26676744  T
Q  222 tctataatactcttaaccatttattatttc 251  Q
    |||||||||| ||||  |||||||||||||    
T  26676743 tctataatacccttactcatttattatttc 26676714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 259
Target Start/End: Original strand, 19692748 - 19692860
Alignment:
Q  147 tccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttatt 246  Q
    |||||||||||||||||  |   ||||||||| | ||||||| |||| |||||| |||||||| | ||||| ||||||||||||  ||||  ||||||||    
T  19692748 tccattttgaagaaattatacataccaagaaatcaaataaatgttgtcattttttatgaaattctttgtgttttttctataatatccttactcatttatt 19692847  T
Q  247 atttcattctatt 259  Q
    |||||||||||||    
T  19692848 atttcattctatt 19692860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 259
Target Start/End: Original strand, 19703333 - 19703445
Alignment:
Q  147 tccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttatt 246  Q
    |||||||||||||||||  |   ||||||||| | ||||||| |||| |||||| |||||||| | ||||| ||||||||||||  ||||  ||||||||    
T  19703333 tccattttgaagaaattatacataccaagaaatcaaataaatgttgtcattttttatgaaattctttgtgttttttctataatatccttactcatttatt 19703432  T
Q  247 atttcattctatt 259  Q
    |||||||||||||    
T  19703433 atttcattctatt 19703445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 255
Target Start/End: Complemental strand, 6129175 - 6129092
Alignment:
Q  172 caagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcattc 255  Q
    ||||||| | |||||||||||||||||||||| ||||| | ||| | ||||||| ||||| ||||| |||||||||||||||||    
T  6129175 caagaaatcaaataaattttgttatttttgataaaattctttgtattttttctacaatacccttaatcatttattatttcattc 6129092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 32543532 - 32543617
Alignment:
Q  173 aagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcattctatt 259  Q
    |||||||| ||||| |||||||| ||||||||||||| | ||||| |||| |||||||| ||||| |||||||||||||||| ||||    
T  32543532 aagaaaccaaataatttttgttaattttgatgaaattctttgtgt-ttttttataatacccttaatcatttattatttcattttatt 32543617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 18507472 - 18507404
Alignment:
Q  190 ttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcattctatt 259  Q
    |||||||||||||||||||| | ||||| ||||||||||||| ||| || ||||||||||||||| ||||    
T  18507472 ttgttatttttgatgaaattttgtgtgttttttctataatac-cttgacaatttattatttcattatatt 18507404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 253
Target Start/End: Original strand, 51777715 - 51777749
Alignment:
Q  219 ttttctataatactcttaaccatttattatttcat 253  Q
    |||||||||||||||||||||||||||||||||||    
T  51777715 ttttctataatactcttaaccatttattatttcat 51777749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 259
Target Start/End: Original strand, 48652268 - 48652356
Alignment:
Q  170 accaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcattctatt 259  Q
    ||||||||| | |||||||||||||||||||||||||||| | ||| | |||||| ||| ||  |||  |||||||||||||||| ||||    
T  48652268 accaagaaatcaaataaattttgttatttttgatgaaattctttgtat-ttttctttaacacatttactcatttattatttcattatatt 48652356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 3929595 - 3929631
Alignment:
Q  173 aagaaacccaataaattttgttatttttgatgaaatt 209  Q
    |||||| ||||||||||||||||||||||||||||||    
T  3929595 aagaaaaccaataaattttgttatttttgatgaaatt 3929631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 237
Target Start/End: Complemental strand, 34284234 - 34284179
Alignment:
Q  182 aataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaa 237  Q
    |||||||||||||| ||||||||||| ||| ||| | ||||||||||||| |||||    
T  34284234 aataaattttgttacttttgatgaaactatttgtattttttctataatacccttaa 34284179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 175
Target Start/End: Original strand, 19361662 - 19361700
Alignment:
Q  137 aaaatacatgtccattttgaagaaattggagtaaccaag 175  Q
    ||||||||||||||||||| |||||||| ||||||||||    
T  19361662 aaaatacatgtccattttggagaaattgcagtaaccaag 19361700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 103; Significance: 3e-51; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 122 - 260
Target Start/End: Original strand, 8626482 - 8626620
Alignment:
Q  122 tactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttt 221  Q
    ||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||| ||| |||||||||    
T  8626482 tactccctccgtttcaaaatacatgtccattttgaagaaattgcattaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 8626581  T
Q  222 tctataatactcttaaccatttattatttcattctattt 260  Q
    |||||||||| ||||| |||||||||||||||| |||||    
T  8626582 tctataatacccttaatcatttattatttcattttattt 8626620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 121 - 266
Target Start/End: Original strand, 1605578 - 1605723
Alignment:
Q  121 atactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgtt 220  Q
    |||||| |||||||||||||||||||||||||||| |||||||| | ||||||||||||| |||||||||||||||||||||||||| ||| ||||||||    
T  1605578 atactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtt 1605677  T
Q  221 ttctataatactcttaaccatttattatttcattctatttcttctc 266  Q
    ||||||||||| ||||| |||||||||||||||| ||||| |||||    
T  1605678 ttctataatacccttaatcatttattatttcattttattttttctc 1605723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 121 - 260
Target Start/End: Original strand, 29260191 - 29260330
Alignment:
Q  121 atactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgtt 220  Q
    |||||| |||||||||||||||||||||||||||| |||||||| | ||||||||||||| |||||||||||||||||||||||||| ||| ||||||||    
T  29260191 atactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtt 29260290  T
Q  221 ttctataatactcttaaccatttattatttcattctattt 260  Q
    ||||||||||| ||||| |||||||||||||||| |||||    
T  29260291 ttctataatacccttaatcatttattatttcattttattt 29260330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 121 - 266
Target Start/End: Original strand, 13757207 - 13757352
Alignment:
Q  121 atactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgtt 220  Q
    ||||||||||||||||||||||||||||||||||| |||||||  | ||||||||||||| |||||||||||||||||||||||||| ||| ||||||||    
T  13757207 atactctctccgtttcaaaatacatgtccattttggagaaattacactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtt 13757306  T
Q  221 ttctataatactcttaaccatttattatttcattctatttcttctc 266  Q
    ||||||||||| ||||| || ||||||||||||| ||||| |||||    
T  13757307 ttctataatacccttaatcaattattatttcattttattttttctc 13757352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 129 - 260
Target Start/End: Complemental strand, 30734753 - 30734622
Alignment:
Q  129 tccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctataa 228  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||    
T  30734753 tccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataa 30734654  T
Q  229 tactcttaaccatttattatttcattctattt 260  Q
    ||| ||||| |||||||||||||||| |||||    
T  30734653 tacccttaatcatttattatttcattttattt 30734622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 120 - 266
Target Start/End: Complemental strand, 15064973 - 15064827
Alignment:
Q  120 aatactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgt 219  Q
    ||||||| |||||||||||||||||||||||||||  |||||||| || |||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  15064973 aatactccctccgtttcaaaatacatgtccattttagagaaattgcagcaaccaagaaaccaaataaattttgttatttttgatgaaattatgtgtgtgt 15064874  T
Q  220 tttctataatactcttaaccatttattatttcattctatttcttctc 266  Q
    ||| |||| ||| |||||||||||||||||| ||| ||||| |||||    
T  15064873 tttttatactacccttaaccatttattatttgattatattttttctc 15064827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 121 - 260
Target Start/End: Original strand, 7761300 - 7761437
Alignment:
Q  121 atactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgtt 220  Q
    |||||| |||||||||||||||||||||||||||| |||||||| | ||||||||||||  ||||||||||||||||||||||||||  |||||||||||    
T  7761300 atactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaactaaataaattttgttatttttgatgaaa--atatgtgtgtt 7761397  T
Q  221 ttctataatactcttaaccatttattatttcattctattt 260  Q
    ||||||||||| ||||| |||||||||||||||| |||||    
T  7761398 ttctataatacccttaatcatttattatttcattttattt 7761437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 137 - 260
Target Start/End: Original strand, 8235639 - 8235762
Alignment:
Q  137 aaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctataatactctta 236  Q
    ||||||||||| |||||||||||||||| ||||||||||||||  |||||| |||||||||||| |||| ||||| ||||||||||||||||||| ||||    
T  8235639 aaaatacatgtacattttgaagaaattgcagtaaccaagaaacgaaataaaatttgttattttttatgatattatgtgtgtgttttctataataccctta 8235738  T
Q  237 accatttattatttcattctattt 260  Q
    | ||||||||||||||||||||||    
T  8235739 atcatttattatttcattctattt 8235762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 126 - 238
Target Start/End: Complemental strand, 30734881 - 30734771
Alignment:
Q  126 ctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttcta 225  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| || ||| | |||||||||||||||||||||||||||  |||||||||||||||    
T  30734881 ctctccgtttcaaaatacatgtccattttgaagaaattgcagtaacaaaaaaatcaaataaattttgttatttttgatgaaat--tatgtgtgttttcta 30734784  T
Q  226 taatactcttaac 238  Q
    |||||| ||||||    
T  30734783 taatacccttaac 30734771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 121 - 260
Target Start/End: Original strand, 17942442 - 17942583
Alignment:
Q  121 atactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgtt--atttttgatgaaattatatgtgtg 218  Q
    |||||| || ||||||||||||||||||||||||  |||||||| ||||||||||||||| ||||  |||| ||  ||||||||||||||||| || |||    
T  17942442 atactcccttcgtttcaaaatacatgtccatttttgagaaattgcagtaaccaagaaaccaaatatttttttttttatttttgatgaaattatgtgcgtg 17942541  T
Q  219 ttttctataatactcttaaccatttattatttcattctattt 260  Q
    || |||||||||| |||||||||||||||||||||| |||||    
T  17942542 ttctctataatacccttaaccatttattatttcattttattt 17942583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 122 - 260
Target Start/End: Original strand, 4129435 - 4129565
Alignment:
Q  122 tactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttt 221  Q
    ||||| |||||||||||||||||| |||| |||| |||||||| |||||||||        |||||||||||||||||| |||||| ||| |||||||||    
T  4129435 tactccctccgtttcaaaatacatatccactttggagaaattgcagtaaccaa--------ataaattttgttattttttatgaaaatatgtgtgtgttt 4129526  T
Q  222 tctataatactcttaaccatttattatttcattctattt 260  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  4129527 tctataatacccttaaccatttattatttcattttattt 4129565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 137 - 254
Target Start/End: Complemental strand, 31559998 - 31559881
Alignment:
Q  137 aaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctataatactctta 236  Q
    ||||||||||||||||||| |||||||| | ||||||| ||| | |||||||||||||||||||||||||| ||| ||| |||||||| |||||| ||||    
T  31559998 aaaatacatgtccattttggagaaattgcattaaccaaaaaatcaaataaattttgttatttttgatgaaaatatgtgtatgttttctgtaataccctta 31559899  T
Q  237 accatttattatttcatt 254  Q
    | ||||||||||||||||    
T  31559898 atcatttattatttcatt 31559881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 173 - 255
Target Start/End: Complemental strand, 11370711 - 11370629
Alignment:
Q  173 aagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcattc 255  Q
    |||||| | |||||||||||||||||||||||| |||   ||||| |||| |||||||||||||||||||||||||| |||||    
T  11370711 aagaaatcaaataaattttgttatttttgatgatattcattgtgttttttttataatactcttaaccatttattattccattc 11370629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 175
Target Start/End: Complemental strand, 19996770 - 19996715
Alignment:
Q  120 aatactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaag 175  Q
    ||||||| ||||||||||||||||||||| |||||| |||||||| ||||||||||    
T  19996770 aatactccctccgtttcaaaatacatgtctattttggagaaattgcagtaaccaag 19996715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 252
Target Start/End: Original strand, 3798163 - 3798233
Alignment:
Q  182 aataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttca 252  Q
    ||||||||||||||||||| ||||| |||| ||||| |||||||||| || ||||  ||||||||||||||    
T  3798163 aataaattttgttatttttcatgaagttatttgtgttttttctataacacccttacacatttattatttca 3798233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 21277659 - 21277574
Alignment:
Q  173 aagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcattctatt 259  Q
    |||||| | ||||||||||||||||||| |||||| | ||||||| ||||||||||||| |||||  ||||| || |||||||||||    
T  21277659 aagaaatcaaataaattttgttattttttatgaaaatttatgtgt-ttttctataatacccttaattatttagtacttcattctatt 21277574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 259
Target Start/End: Complemental strand, 30235510 - 30235447
Alignment:
Q  196 tttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcattctatt 259  Q
    ||||| |||||||| | ||||  ||||||||| ||||||||| |||||||||||||||||||||    
T  30235510 ttttttatgaaattctttgtgctttttctatattactcttaatcatttattatttcattctatt 30235447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 259
Target Start/End: Original strand, 14287049 - 14287125
Alignment:
Q  182 aataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcattctatt 259  Q
    ||||||||||||||||||| |||||||| | ||  | ||||||||||||| |||| || |||||||||||||| ||||    
T  14287049 aataaattttgttattttttatgaaattctgtgctt-ttttctataatacccttacccctttattatttcattttatt 14287125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 262
Target Start/End: Original strand, 1814645 - 1814735
Alignment:
Q  172 caagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcattctatttct 262  Q
    ||||||| | |||||| ||||||||||||||||||||| |  |||| ||| ||||||  | ||||||  ||| |||||| |||||||||||    
T  1814645 caagaaatcaaataaactttgttatttttgatgaaattcttcgtgtttttcctataacgcccttaactttttgttattttattctatttct 1814735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 163
Target Start/End: Original strand, 19996321 - 19996363
Alignment:
Q  121 atactctctccgtttcaaaatacatgtccattttgaagaaatt 163  Q
    |||||| |||||||||||||||||||||||||||  |||||||    
T  19996321 atactccctccgtttcaaaatacatgtccattttagagaaatt 19996363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 259
Target Start/End: Original strand, 26860819 - 26860902
Alignment:
Q  172 caagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcattctatt 259  Q
    ||||||| | ||||| |||| ||||||||||||||||| |  |||| | ||||||||  | |||||||||||||||||| ||||||||    
T  26860819 caagaaatcaaataactttttttatttttgatgaaatttt--gtgtttattctataa--cccttaaccatttattattttattctatt 26860902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 211
Target Start/End: Complemental strand, 33845500 - 33845471
Alignment:
Q  182 aataaattttgttatttttgatgaaattat 211  Q
    ||||||||||||||||||||||||||||||    
T  33845500 aataaattttgttatttttgatgaaattat 33845471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 150
Target Start/End: Original strand, 22054772 - 22054800
Alignment:
Q  122 tactctctccgtttcaaaatacatgtcca 150  Q
    |||||||||||||||||||||||||||||    
T  22054772 tactctctccgtttcaaaatacatgtcca 22054800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 4e-50; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 122 - 254
Target Start/End: Original strand, 3585451 - 3585583
Alignment:
Q  122 tactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttt 221  Q
    ||||| |||||||||||||||||||||||||||| |||||||| | ||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  3585451 tactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatatgtgtgttt 3585550  T
Q  222 tctataatactcttaaccatttattatttcatt 254  Q
    |||||||||| ||||| ||||||||||||||||    
T  3585551 tctataatacccttaatcatttattatttcatt 3585583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 129 - 260
Target Start/End: Original strand, 7146920 - 7147051
Alignment:
Q  129 tccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctataa 228  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||| |||||    
T  7146920 tccgtttcaaaatacatgtccattttgaagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttttataa 7147019  T
Q  229 tactcttaaccatttattatttcattctattt 260  Q
    ||| ||||| |||||||||||||||| |||||    
T  7147020 tacccttaatcatttattatttcattttattt 7147051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 114 - 260
Target Start/End: Complemental strand, 2540216 - 2540070
Alignment:
Q  114 aaaatgaatactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatat 213  Q
    ||||| ||||||  |||||||||||||||||||||||||||| |||||||| | ||||||||||||| |||||||||||||||||||||||||| ||| |    
T  2540216 aaaattaatacttcctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt 2540117  T
Q  214 gtgtgttttctataatactcttaaccatttattatttcattctattt 260  Q
    |||||||||||||||||| ||||| |||||||||||||||| |||||    
T  2540116 gtgtgttttctataatacccttaatcatttattatttcattttattt 2540070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 121 - 254
Target Start/End: Complemental strand, 11646603 - 11646470
Alignment:
Q  121 atactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgtt 220  Q
    |||||| || ||||||||||||||||||||||||| |||||||| | ||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  11646603 atactcccttcgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatatgtgtgtt 11646504  T
Q  221 ttctataatactcttaaccatttattatttcatt 254  Q
    ||||||||||| ||||| ||||||||||||||||    
T  11646503 ttctataatacccttaatcatttattatttcatt 11646470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 122 - 266
Target Start/End: Original strand, 27034997 - 27035140
Alignment:
Q  122 tactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttt 221  Q
    ||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||| |||| ||||||||||||||||||| | |||| ||    
T  27034997 tactccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataattttttttatttttgatgaaattatgtctgtg-tt 27035095  T
Q  222 tctataatactcttaaccatttattatttcattctatttcttctc 266  Q
    |||||||||| |||||||||||||||||||||||||||| |||||    
T  27035096 tctataatacccttaaccatttattatttcattctattttttctc 27035140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 120 - 260
Target Start/End: Complemental strand, 40058582 - 40058442
Alignment:
Q  120 aatactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgt 219  Q
    ||||||| |||||||||||||||||||||||||| | |||||||| | ||||||||||||| |||||||||||||||||||||||||| ||| |||||||    
T  40058582 aatactccctccgtttcaaaatacatgtccatttcggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgt 40058483  T
Q  220 tttctataatactcttaaccatttattatttcattctattt 260  Q
    |||||||||||| ||||| |||||||||||||||| |||||    
T  40058482 tttctataatacccttaatcatttattatttcattttattt 40058442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 122 - 260
Target Start/End: Complemental strand, 43275674 - 43275538
Alignment:
Q  122 tactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttt 221  Q
    ||||| |||||||||||||||||||||||||||| |||||||| | ||||||||||||| ||||||||||||||||||||||||||  ||||||||||||    
T  43275674 tactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaa--atatgtgtgttt 43275577  T
Q  222 tctataatactcttaaccatttattatttcattctattt 260  Q
    |||||||||| ||||| |||||||||||||||| |||||    
T  43275576 tctataatacccttaatcatttattatttcattttattt 43275538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 122 - 260
Target Start/End: Complemental strand, 11174500 - 11174362
Alignment:
Q  122 tactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttt 221  Q
    ||||| |||||||||||||||||||| ||||||| |||||||| | ||||||||||||| |||||||||||||||||||||||||| ||| |||||||||    
T  11174500 tactccctccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 11174401  T
Q  222 tctataatactcttaaccatttattatttcattctattt 260  Q
    |||||||||| ||||| |||||||||||||||| |||||    
T  11174400 tctataatacccttaatcatttattatttcattttattt 11174362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 122 - 260
Target Start/End: Original strand, 37345571 - 37345709
Alignment:
Q  122 tactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttt 221  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |  |||||||||||| ||||||||||||||||||| |||||| ||| |||||||||    
T  37345571 tactccctccgtttcaaaatacatgtccattttgaagaaattgcaccaaccaagaaaccaaataaattttgttatttttaatgaaaatatgtgtgtgttt 37345670  T
Q  222 tctataatactcttaaccatttattatttcattctattt 260  Q
    |||||||||| ||||| |||||||||||||||| |||||    
T  37345671 tctataatacccttaatcatttattatttcattttattt 37345709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 129 - 266
Target Start/End: Complemental strand, 30999791 - 30999656
Alignment:
Q  129 tccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctataa 228  Q
    |||||||||||||||||||| |||||| |||||||| | ||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||    
T  30999791 tccgtttcaaaatacatgtcaattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaa--atatgtgtgttttctataa 30999694  T
Q  229 tactcttaaccatttattatttcattctatttcttctc 266  Q
    ||| ||||| |||||||||||||||| ||||| |||||    
T  30999693 tacccttaatcatttattatttcattttattttttctc 30999656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 121 - 260
Target Start/End: Complemental strand, 40919007 - 40918870
Alignment:
Q  121 atactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgtt 220  Q
    |||||| |||||||||||||||||||||||||||| |||||||| | ||||||||||||| ||||||||||||||||||| ||||||  | |||||||||    
T  40919007 atactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttattttttatgaaa--acatgtgtgtt 40918910  T
Q  221 ttctataatactcttaaccatttattatttcattctattt 260  Q
    ||||||||||| ||||| |||||||||||||||| |||||    
T  40918909 ttctataatacccttaatcatttattatttcattttattt 40918870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 122 - 254
Target Start/End: Original strand, 36068080 - 36068212
Alignment:
Q  122 tactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttt 221  Q
    ||||| |||||||||||||||||||||||||||| || ||||| | ||||||| ||||| ||||||||||||||||||| |||||| |||||||||||||    
T  36068080 tactccctccgtttcaaaatacatgtccattttggaggaattgtactaaccaaaaaaccaaataaattttgttatttttaatgaaaatatatgtgtgttt 36068179  T
Q  222 tctataatactcttaaccatttattatttcatt 254  Q
    |||||||||| ||||| |||| |||||||||||    
T  36068180 tctataatacccttaatcattaattatttcatt 36068212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 122 - 260
Target Start/End: Complemental strand, 20546564 - 20546428
Alignment:
Q  122 tactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttt 221  Q
    ||||| |||| |||||||||| ||||||||||||||||||||| |  || |||||||   |||||||||||||||||||||||||||  |||||||||||    
T  20546564 tactccctccatttcaaaatatatgtccattttgaagaaattgcaacaatcaagaaattaaataaattttgttatttttgatgaaat--tatgtgtgttt 20546467  T
Q  222 tctataatactcttaaccatttattatttcattctattt 260  Q
    | ||| |||| |||||| ||||||||||||||| |||||    
T  20546466 tatatgatacccttaacaatttattatttcattatattt 20546428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 170 - 259
Target Start/End: Complemental strand, 28326883 - 28326797
Alignment:
Q  170 accaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcattctatt 259  Q
    ||||||||| | |||||||||||||||||||||||||||||| |||   ||||| |||||||||||||| ||||||||||||||||||||    
T  28326883 accaagaaatcaaataaattttgttatttttgatgaaattatgtgt---ttttcaataatactcttaactatttattatttcattctatt 28326797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 129 - 259
Target Start/End: Original strand, 35866621 - 35866751
Alignment:
Q  129 tccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctataa 228  Q
    ||||||||| ||||| |||||||||| ||||||||  |   |||||||||    |||||| ||||||||||| |||||||| | ||||| ||||||||||    
T  35866621 tccgtttcacaatacttgtccattttaaagaaattatatataccaagaaattagataaatgttgttatttttcatgaaattctttgtgttttttctataa 35866720  T
Q  229 tactcttaaccatttattatttcattctatt 259  Q
    ||| ||||| |||||||||||| ||||||||    
T  35866721 tacccttaaacatttattattttattctatt 35866751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 128 - 255
Target Start/End: Original strand, 28562427 - 28562555
Alignment:
Q  128 ctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtg-tgttttctat 226  Q
    |||||||||||||||| |||||||||||||||||||  |   |||||| || | ||||||| |||| ||||||||||||||| | |||| | ||||||||    
T  28562427 ctccgtttcaaaatacttgtccattttgaagaaattacacataccaaggaatcaaataaatgttgtcatttttgatgaaattctttgtgtttttttctat 28562526  T
Q  227 aatactcttaaccatttattatttcattc 255  Q
    ||||| ||||  ||||||| |||||||||    
T  28562527 aatacccttactcatttatgatttcattc 28562555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 122 - 175
Target Start/End: Complemental strand, 40486506 - 40486453
Alignment:
Q  122 tactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaag 175  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  40486506 tactccctccgtttcaaaatacatgtccattttgaagaaattgcagtaaccaag 40486453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 175
Target Start/End: Complemental strand, 8697952 - 8697898
Alignment:
Q  121 atactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaag 175  Q
    |||||| |||||||||||||||||||||||||||| |||||||| ||||||||||    
T  8697952 atactccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 8697898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 259
Target Start/End: Complemental strand, 13881172 - 13881094
Alignment:
Q  182 aataaattttgttatttttgatgaaattatatgtgtgtttt-ctataatactcttaaccatttattatttcattctatt 259  Q
    |||||||||||||||||||||||||||| | || || |||| ||||||||| ||||| |||||||||||||||| ||||    
T  13881172 aataaattttgttatttttgatgaaattgtgtgcgtttttttctataatacccttaatcatttattatttcattatatt 13881094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 175
Target Start/End: Complemental strand, 41308015 - 41307961
Alignment:
Q  121 atactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaag 175  Q
    |||||| |||||||||||||||||||||||||||| |||||||| ||||||||||    
T  41308015 atactccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 41307961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 122 - 175
Target Start/End: Complemental strand, 45278754 - 45278701
Alignment:
Q  122 tactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaag 175  Q
    ||||| |||||||||||||||||||||||||||| |||||||| ||||||||||    
T  45278754 tactccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 45278701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 175
Target Start/End: Original strand, 10646598 - 10646645
Alignment:
Q  128 ctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaag 175  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||    
T  10646598 ctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 10646645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 258
Target Start/End: Complemental strand, 10181073 - 10180998
Alignment:
Q  182 aataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcattctat 258  Q
    ||||||||||||||||||| || ||||||  | ||| |||| ||||||||  |||||||||||||||||||||||||    
T  10181073 aataaattttgttattttttataaaattacgtttgtttttt-tataataccgttaaccatttattatttcattctat 10180998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 163
Target Start/End: Original strand, 41305760 - 41305803
Alignment:
Q  120 aatactctctccgtttcaaaatacatgtccattttgaagaaatt 163  Q
    |||||||||||||||||||||||||||||||||||  |||||||    
T  41305760 aatactctctccgtttcaaaatacatgtccattttagagaaatt 41305803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 260
Target Start/End: Original strand, 37510314 - 37510404
Alignment:
Q  170 accaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcattctattt 260  Q
    ||||||||||  ||||||||||||||||||| || ||||| | | | | ||||| ||||||| ||||| |||||| ||||||||| |||||    
T  37510314 accaagaaactaaataaattttgttatttttaataaaattctttctattttttcaataatacccttaatcatttaatatttcattttattt 37510404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 231
Target Start/End: Original strand, 28567925 - 28568029
Alignment:
Q  128 ctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgt-gttttctat 226  Q
    |||||||||||||||| |||||||||||||||||||  |   |||||  || | ||||||| |||| |||||| |||||||| | |||||  ||||||||    
T  28567925 ctccgtttcaaaatacttgtccattttgaagaaattacacataccaatgaatcaaataaatgttgtcattttttatgaaattctttgtgtctttttctat 28568024  T
Q  227 aatac 231  Q
    |||||    
T  28568025 aatac 28568029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 231
Target Start/End: Original strand, 28575518 - 28575622
Alignment:
Q  128 ctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgt-gttttctat 226  Q
    |||||||||||||||| |||||||||||||||||||  |   |||||  || | ||||||| |||| |||||| |||||||| | |||||  ||||||||    
T  28575518 ctccgtttcaaaatacttgtccattttgaagaaattacacataccaatgaatcaaataaatgttgtcattttttatgaaattctttgtgtctttttctat 28575617  T
Q  227 aatac 231  Q
    |||||    
T  28575618 aatac 28575622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 30268602 - 30268529
Alignment:
Q  182 aataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcattc 255  Q
    |||||||||||||| ||||| || |||||| ||| | |||||||||||||   |||| ||||||||| ||||||    
T  30268602 aataaattttgttacttttggtggaattatttgtcttttttctataataccgctaactatttattatctcattc 30268529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 259
Target Start/End: Original strand, 39151466 - 39151542
Alignment:
Q  182 aataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcattctatt 259  Q
    |||||| ||||||||||||||||||||||| | | | ||||||||||||   || | |||||||||||| ||||||||    
T  39151466 aataaactttgttatttttgatgaaattatgtat-ttttttctataatataatttatcatttattattttattctatt 39151542  T

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Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 150
Target Start/End: Original strand, 40494384 - 40494412
Alignment:
Q  122 tactctctccgtttcaaaatacatgtcca 150  Q
    |||||||||||||||||||||||||||||    
T  40494384 tactctctccgtttcaaaatacatgtcca 40494412  T

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Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 121 - 260
Target Start/End: Original strand, 10981507 - 10981646
Alignment:
Q  121 atactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgtt 220  Q
    |||||| |||||||||||||||||||||||||||| |||||||| | ||||||||||||| |||||||||||||||||||||||||| ||| ||||||||    
T  10981507 atactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtt 10981606  T
Q  221 ttctataatactcttaaccatttattatttcattctattt 260  Q
    ||||||||||| ||||| |||||||||||||||| |||||    
T  10981607 ttctataatacccttaatcatttattatttcattttattt 10981646  T

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Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 120 - 260
Target Start/End: Original strand, 27813809 - 27813949
Alignment:
Q  120 aatactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgt 219  Q
    ||||||| |||||||||||||||||||||||||||| |||||||| | ||||||||||||| |||||||||||||||||||||||||| ||| | |||||    
T  27813809 aatactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtatgtgt 27813908  T
Q  220 tttctataatactcttaaccatttattatttcattctattt 260  Q
    |||||||||||| ||||| |||||||||||||||| |||||    
T  27813909 tttctataatacccttaatcatttattatttcattttattt 27813949  T

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Target: chr7; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 129 - 260
Target Start/End: Original strand, 40348967 - 40349098
Alignment:
Q  129 tccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctataa 228  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||||||| | |||||||||||||||||||||||||| ||| ||||||||||||||||    
T  40348967 tccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaatcaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataa 40349066  T
Q  229 tactcttaaccatttattatttcattctattt 260  Q
    ||| ||||| |||||||||||||||| |||||    
T  40349067 tacccttaatcatttattatttcattttattt 40349098  T

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Target: chr7; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 128 - 260
Target Start/End: Complemental strand, 36453395 - 36453263
Alignment:
Q  128 ctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctata 227  Q
    |||||||||||||||||||||||||||| |||||||| | ||||||||||||| |||||||||| ||||||||||||||| ||| ||||| |||||||||    
T  36453395 ctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgttttttctata 36453296  T
Q  228 atactcttaaccatttattatttcattctattt 260  Q
    |||| ||||| |||||||||||||||| |||||    
T  36453295 atacccttaatcatttattatttcattttattt 36453263  T

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Target: chr7; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 122 - 260
Target Start/End: Original strand, 47110451 - 47110587
Alignment:
Q  122 tactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttt 221  Q
    ||||| |||| ||||||||||||||||||||||| |||||||| | ||||||||||||  ||||||||||||||||||||||||||  ||||||||||||    
T  47110451 tactccctccatttcaaaatacatgtccattttggagaaattgcactaaccaagaaacaaaataaattttgttatttttgatgaaa--atatgtgtgttt 47110548  T
Q  222 tctataatactcttaaccatttattatttcattctattt 260  Q
    |||||||||| ||||| |||||||||||| ||| |||||    
T  47110549 tctataatacccttaatcatttattattttattttattt 47110587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 129 - 260
Target Start/End: Complemental strand, 25614621 - 25614492
Alignment:
Q  129 tccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctataa 228  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||| ||||| ||||||||||||||||||||||||||  |||||||||||||||  ||    
T  25614621 tccgtttcaaaatacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaa--atatgtgtgttttctgaaa 25614524  T
Q  229 tactcttaaccatttattatttcattctattt 260  Q
    ||| ||||| |||||||||||||||| |||||    
T  25614523 tacccttaatcatttattatttcattttattt 25614492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 182 - 258
Target Start/End: Original strand, 3091577 - 3091653
Alignment:
Q  182 aataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcattctat 258  Q
    |||||||||||||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||||||||||||||    
T  3091577 aataaattttgttatttttgatgaaattctttgtgttttttctataatacccttaaccatttattatttcattctat 3091653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 181 - 260
Target Start/End: Complemental strand, 27942257 - 27942178
Alignment:
Q  181 caataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcattctattt 260  Q
    ||||||||||| |||||||| |||| ||||| ||||| |||||||||||||  |||||||||||||||||||||||||||    
T  27942257 caataaatttttttatttttaatgagattatgtgtgttttttctataatacctttaaccatttattatttcattctattt 27942178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 3498967 - 3498887
Alignment:
Q  186 aattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcattctatttcttctc 266  Q
    ||||||||||||||| |||||||| | ||| | |||||||||||||| ||||||||||||||||||||| ||||| |||||    
T  3498967 aattttgttattttttatgaaattttttgtatcttttctataatacttttaaccatttattatttcattttattttttctc 3498887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 16360444 - 16360511
Alignment:
Q  182 aataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttc 251  Q
    |||||||||||||||||||||||||||| |  |||| ||||||||||||| |||||||||||||||||||    
T  16360444 aataaattttgttatttttgatgaaattct--gtgttttttctataatacccttaaccatttattatttc 16360511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 175
Target Start/End: Complemental strand, 25060188 - 25060133
Alignment:
Q  120 aatactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaag 175  Q
    ||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||    
T  25060188 aatactccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 25060133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 259
Target Start/End: Original strand, 16662156 - 16662231
Alignment:
Q  182 aataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcattctatt 259  Q
    ||||||||||||||||||||||||||  || ||||| |||| |||||||| |||||||||||||||||| ||| ||||    
T  16662156 aataaattttgttatttttgatgaaa--atttgtgttttttttataatacccttaaccatttattattttattatatt 16662231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 259
Target Start/End: Original strand, 17636516 - 17636591
Alignment:
Q  182 aataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcattctatt 259  Q
    ||||||||||||||||||||||||||  || ||||| |||| |||||||| |||||||||||||||||| ||| ||||    
T  17636516 aataaattttgttatttttgatgaaa--atttgtgttttttttataatacccttaaccatttattattttattatatt 17636591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 259
Target Start/End: Original strand, 37983206 - 37983289
Alignment:
Q  172 caagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcattctatt 259  Q
    ||||||| | |||||||||||||||||||||||||||| ||    |||||| ||||||||  ||||||||||||||||||||| ||||    
T  37983206 caagaaatcaaataaattttgttatttttgatgaaatttta----tgttttttataatacctttaaccatttattatttcattatatt 37983289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 175
Target Start/End: Complemental strand, 2911602 - 2911548
Alignment:
Q  121 atactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaag 175  Q
    |||||| |||| ||||||||||||||||||||||| |||||||| ||||||||||    
T  2911602 atactccctccatttcaaaatacatgtccattttggagaaattgcagtaaccaag 2911548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 7743613 - 7743541
Alignment:
Q  182 aataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcattc 255  Q
    |||||||||||||||||||||||||||||| ||| |  ||||||||||||  ||||  ||||||||||||||||    
T  7743613 aataaattttgttatttttgatgaaattatgtgt-ttctttctataataccgttaattatttattatttcattc 7743541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 163
Target Start/End: Original strand, 2910858 - 2910900
Alignment:
Q  121 atactctctccgtttcaaaatacatgtccattttgaagaaatt 163  Q
    |||||| ||||||||||||||||||||| ||||| ||||||||    
T  2910858 atactccctccgtttcaaaatacatgtctattttaaagaaatt 2910900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 150
Target Start/End: Complemental strand, 25566811 - 25566781
Alignment:
Q  120 aatactctctccgtttcaaaatacatgtcca 150  Q
    |||||||||||||||||||||||||||||||    
T  25566811 aatactctctccgtttcaaaatacatgtcca 25566781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 163
Target Start/End: Original strand, 25059450 - 25059491
Alignment:
Q  122 tactctctccgtttcaaaatacatgtccattttgaagaaatt 163  Q
    |||| ||||||||||||||||||||||||||||  |||||||    
T  25059450 tactttctccgtttcaaaatacatgtccattttagagaaatt 25059491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 121 - 266
Target Start/End: Original strand, 45453 - 45598
Alignment:
Q  121 atactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgtt 220  Q
    |||||| |||||||||||||||||||| ||||||| |||||||| |  |||||||||||| |||||||||||||||||||||||||||||| ||||| ||    
T  45453 atactccctccgtttcaaaatacatgttcattttggagaaattgcaccaaccaagaaaccaaataaattttgttatttttgatgaaattatgtgtgtatt 45552  T
Q  221 ttctataatactcttaaccatttattatttcattctatttcttctc 266  Q
    ||||||||||| |||||||||||||||||| ||||||||| |||||    
T  45553 ttctataatacccttaaccatttattattttattctattttttctc 45598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1770 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 122 - 260
Target Start/End: Original strand, 170 - 300
Alignment:
Q  122 tactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttt 221  Q
    ||||| |||||||||||||||||| |||| |||| |||||||| |||||||||        |||||||||||||||||| |||||| ||| |||||||||    
T  170 tactccctccgtttcaaaatacatatccactttggagaaattgcagtaaccaa--------ataaattttgttattttttatgaaaatatgtgtgtgttt 261  T
Q  222 tctataatactcttaaccatttattatttcattctattt 260  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  262 tctataatacccttaaccatttattatttcattttattt 300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 137 - 260
Target Start/End: Complemental strand, 525 - 404
Alignment:
Q  137 aaaatacatgtccattttgaagaaattggagtaaccaagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctataatactctta 236  Q
    ||||||||||| |||||||  ||||||| ||||| ||| ||| | |||||||||||||||||||||| ||||  |||||||||||| |||||||| ||||    
T  525 aaaatacatgttcattttggcgaaattgcagtaatcaaaaaatcaaataaattttgttatttttgataaaat--tatgtgtgttttttataataccctta 428  T
Q  237 accatttattatttcattctattt 260  Q
    | ||||||||||||||||||||||    
T  427 atcatttattatttcattctattt 404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 172 - 259
Target Start/End: Original strand, 70874 - 70961
Alignment:
Q  172 caagaaacccaataaattttgttatttttgatgaaattatatgtgtgttttctataatactcttaaccatttattatttcattctatt 259  Q
    ||||||| | |||||||||||||||||||||||||||| | ||||| |||||| ||| || |||||||||||||||||||||||||||    
T  70874 caagaaatcaaataaattttgttatttttgatgaaattctgtgtgttttttctgtaacacccttaaccatttattatttcattctatt 70961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 188 - 266
Target Start/End: Complemental strand, 65375 - 65296
Alignment:
Q  188 ttttgttatttttgatgaaattatatgtgtgtttt-ctataatactcttaaccatttattatttcattctatttcttctc 266  Q
    |||| ||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||| |||||    
T  65375 ttttattatttttgatgaaattatatgtgtttttttctataatacccttaaccatttattatttcattctattttttctc 65296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 122 - 175
Target Start/End: Original strand, 23467 - 23520
Alignment:
Q  122 tactctctccgtttcaaaatacatgtccattttgaagaaattggagtaaccaag 175  Q
    ||||| |||||||||||||||||||||||||||| |||||||| ||||||||||    
T  23467 tactccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 23520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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