View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_low_79 (Length: 273)
Name: NF20783_low_79
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_low_79 |
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Alignment Details
Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 111 - 263
Target Start/End: Complemental strand, 20963494 - 20963342
Alignment:
| Q |
111 |
ccaaacaatatgatcattaggaactcaatgatttaatggattttgagtagtagaagacgtaatgtcctaaggaaacacttacctcactaaaacaacattc |
210 |
Q |
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| T |
20963494 |
ccaaacaatatgataattaggaacccaatgaattaatggatttcgagtactagaagacgtaatgtactaaggaaacacttgtctcactaaaacaacattc |
20963395 |
T |
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| Q |
211 |
caacttttagaattattgtcaattaaactagtaaatttgtattgaaatttatg |
263 |
Q |
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| T |
20963394 |
aaacttttggaattattgtcaattaaactagtaaatttgtattgaaatttatg |
20963342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 20963980 - 20963898
Alignment:
| Q |
14 |
aaatcccaaacgctacaaatgagaggtgtcaactaatttgttaa-cacacaacttatacacacaacgaacataatacatacca |
95 |
Q |
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| T |
20963980 |
aaatcccagacactgcaaataagaggtgtcaactaattcgttaaacaagcaacttatacacactacgaacataatacatacca |
20963898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 92
Target Start/End: Original strand, 12078237 - 12078300
Alignment:
| Q |
29 |
caaatgagaggtgtcaactaatttgttaacacacaacttatacacacaacgaacataatacata |
92 |
Q |
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| T |
12078237 |
caaatgagaagtgtcaactaactcgtcagcagacaacttgtacacactacgaacataatacata |
12078300 |
T |
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