View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_low_80 (Length: 272)
Name: NF20783_low_80
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_low_80 |
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| [»] chr4 (12 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 272
Target Start/End: Complemental strand, 21222390 - 21222135
Alignment:
| Q |
17 |
tctcggacactaaatgttgattatcctcctcttgaaacatttatttgtttttacactctaacactcaacaacaagctcaagttcataaaccaatagaaag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21222390 |
tctcggacactaaatgttgattatcctcctcttgaaacatttatttgtttttacactctaacactcaacaacaagctcaagttcataaaccaatagaaga |
21222291 |
T |
|
| Q |
117 |
nnnnnnnnncatgaaatcaacgatttagaatactaactggaaatatagataaagaaatgatctcatacccaatttcttacaatctcgcgctcttagggtt |
216 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21222290 |
aaaaaaaaacatgaaatcaacgatttagaatactaactggaaatatagataaagaaatgatctcatacccaatttcttacaatctcgcgctcttagggtt |
21222191 |
T |
|
| Q |
217 |
ctggtgttcataaattgcaaattgtatagttgtgtgatgcagcaatatctcagacc |
272 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
21222190 |
ctggtgttcataaattgcaaattgtataattgtgtgatgcagcaatatctcggacc |
21222135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 272
Target Start/End: Complemental strand, 21230566 - 21230307
Alignment:
| Q |
13 |
aatatctcggacactaaatgttgattatcctcctcttgaaacatttatttgtttttacactctaacactcaacaacaagctcaagttcataaaccaatag |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21230566 |
aatatctcggacactaaatgttgattatcctcctcttgaaatatttatttgtttttacactctaacactcaacaacaagctcaagttcataaaccaatag |
21230467 |
T |
|
| Q |
113 |
aaagnnnnnnnnncatgaaatcaacgatttagaatactaactggaaatatagataaagaaatgatctcatacccaatttcttacaatctcgcgctcttag |
212 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
21230466 |
aagaaaaaaaaaacatgaaatcaacgatttagaatactaactggaaatatagataaagaaatgatctcatactcaatttcttacaatctcgcgctcttag |
21230367 |
T |
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| Q |
213 |
ggttctggtgttcataaattgcaaattgtatagttgtgtgatgcagcaatatctcagacc |
272 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
21230366 |
ggttctggtgttcataaattgcaaattgtataattgtgtgatgcagcaatatctcggacc |
21230307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 25 - 272
Target Start/End: Complemental strand, 21252045 - 21251799
Alignment:
| Q |
25 |
actaaatgttgattatcctcctcttgaaacatttatttgtttttacactctaacactcaacaacaagctcaagttcataaaccaatagaaagnnnnnnnn |
124 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||| | |
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| T |
21252045 |
actatatgttgattatcctcctcttgaaacatttatttgttttcacactataatactcaacaacaagctcaagttcataaaccaatagaa-gaaaaaaaa |
21251947 |
T |
|
| Q |
125 |
ncatgaaatcaacgatttagaatactaactggaaatatagataaagaaatgatctcatacccaatttcttacaatctcgcgctcttagggttctggtgtt |
224 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||| ||||||| |
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| T |
21251946 |
acatgaaatcaacgatttagaatactaactggaaatatagataaagaaatgatctcatgcccaatttattacaatctcgcgctcctagggttgtggtgtt |
21251847 |
T |
|
| Q |
225 |
cataaattgcaaattgtatagttgtgtgatgcagcaatatctcagacc |
272 |
Q |
| |
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|||||||||||||||||||| |||| | ||||||| |||||||||||| |
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| T |
21251846 |
cataaattgcaaattgtataattgtattatgcagcgatatctcagacc |
21251799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 143 - 272
Target Start/End: Complemental strand, 21256066 - 21255937
Alignment:
| Q |
143 |
agaatactaactggaaatatagataaagaaatgatctcatacccaatttcttacaatctcgcgctcttagggttctggtgttcataaattgcaaattgta |
242 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||| |||| |||||||||||||||||||| |
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| T |
21256066 |
agaatactaactggaaatatagataaagaaatgatctcatgcccaatttattacaatctcgcgctcctagggttgtggttttcataaattgcaaattgta |
21255967 |
T |
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| Q |
243 |
tagttgtgtgatgcagcaatatctcagacc |
272 |
Q |
| |
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|| |||| | ||||||| |||||||||||| |
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|
| T |
21255966 |
taattgtattatgcagcgatatctcagacc |
21255937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 160
Target Start/End: Complemental strand, 21256229 - 21256085
Alignment:
| Q |
13 |
aatatctcggacactaaatgttgattatcctcctcttgaaacatttatttgtttttacactctaacactcaacaacaagctcaagttcataaaccaatag |
112 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
21256229 |
aatatctcggatactaaatgttgattatcctcctcttggaacatttatttgttttcacactctaatactcaacaacaagctcaagttcataaaccaatag |
21256130 |
T |
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| Q |
113 |
aaagnnnnnnnnncatgaaatcaacgatttagaatactaactggaaat |
160 |
Q |
| |
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||| |||||||||||||||||||||||||||| |||||| |
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| T |
21256129 |
aaa---aaaaaaacatgaaatcaacgatttagaatactaaccggaaat |
21256085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 21247692 - 21247592
Alignment:
| Q |
13 |
aatatctcggacactaaatgttgattatcctcctcttgaaacatttatttgtttttacactctaacactcaacaacaagctcaagttcataaaccaatag |
112 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
21247692 |
aatatctcggatactaaatgttgattatcctcctcttggaacatttatttgttttcacactctaacactcaacaataagctcaagttcataaaccaatag |
21247593 |
T |
|
| Q |
113 |
a |
113 |
Q |
| |
|
| |
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|
| T |
21247592 |
a |
21247592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 160 - 272
Target Start/End: Complemental strand, 21247565 - 21247453
Alignment:
| Q |
160 |
tatagataaagaaatgatctcatacccaatttcttacaatctcgcgctcttagggttctggtgttcataaattgcaaattgtatagttgtgtgatgcagc |
259 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| || |||| | || |||| |
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| T |
21247565 |
tatagataaagaaatgatctcatgcccaatttcttacaatctcgcgctcctagggttgtggtgttcataaattgcaaattgtgtaattgtattatccagc |
21247466 |
T |
|
| Q |
260 |
aatatctcagacc |
272 |
Q |
| |
|
|||||| ||||| |
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|
| T |
21247465 |
gatatcttagacc |
21247453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 16 - 233
Target Start/End: Complemental strand, 21277866 - 21277656
Alignment:
| Q |
16 |
atctcggacactaaatgttgattatcctcctcttgaaacatttatttgtttttacactctaacactcaacaacaagctcaagttcataaaccaatagaaa |
115 |
Q |
| |
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|||||||||| ||||||||| | | | |||| || | |||||| || |||| ||||| || ||||||| |||||||||||||||||||||||||||||| |
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| T |
21277866 |
atctcggacatcaaatgttgaattttcccctcatggagcatttaattattttcacactttagcactcaataacaagctcaagttcataaaccaatagaaa |
21277767 |
T |
|
| Q |
116 |
gnnnnnnnnncatgaaatcaacgatttagaatactaactggaaatatagataaagaaatgatctcatacccaatttcttacaatctcgcgctcttagggt |
215 |
Q |
| |
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| |||||| | |||||||||| ||| ||||||||||||||||||||| |||||||| |||||||||| |||| | ||| || || |
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| T |
21277766 |
aaat-------agaaaatcagaaaattagaatactgacttgaaatatagataaagaaatgacctcatacctaatttcttaccttctcacactcctaacgt |
21277674 |
T |
|
| Q |
216 |
tctggtgttcataaattg |
233 |
Q |
| |
|
| |||||||||||||||| |
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| T |
21277673 |
tttggtgttcataaattg |
21277656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 21255701 - 21255622
Alignment:
| Q |
32 |
gttgattatcctcctcttgaaacatttatttgtttttacactctaacactcaacaacaagctcaagttcataaaccaata |
111 |
Q |
| |
|
||||||| |||| ||||||||| | || |||| ||| || | ||| ||| |||||||||||||||||||||||||||||| |
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|
| T |
21255701 |
gttgattttccttctcttgaaataattctttgctttgacgccctagcacacaacaacaagctcaagttcataaaccaata |
21255622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 21277322 - 21277285
Alignment:
| Q |
78 |
cactcaacaacaagctcaagttcataaaccaatagaaa |
115 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
21277322 |
cactcgacaacaagctcaagttcataaaccaatagaaa |
21277285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 115
Target Start/End: Complemental strand, 21230264 - 21230222
Alignment:
| Q |
73 |
tctaacactcaacaacaagctcaagttcataaaccaatagaaa |
115 |
Q |
| |
|
|||| |||||||||| || |||||||||||||||||||||||| |
|
|
| T |
21230264 |
tctagcactcaacaataatctcaagttcataaaccaatagaaa |
21230222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 111
Target Start/End: Complemental strand, 21251513 - 21251484
Alignment:
| Q |
82 |
caacaacaagctcaagttcataaaccaata |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
21251513 |
caacaacaagctcaagttcataaaccaata |
21251484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 38244625 - 38244544
Alignment:
| Q |
32 |
gttgattatcctcctcttgaaacatttatttgtttttacactctaacactcaacaacaagctcaagttcataaaccaataga |
113 |
Q |
| |
|
||||||| ||||||||| | || |||| ||| ||| |||||||||||||||| ||||| | ||| ||||||||| |||||| |
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| T |
38244625 |
gttgattttcctcctctcggaatatttcttttctttcacactctaacactcaaaaacaaacacaatttcataaacaaataga |
38244544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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