View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20783_low_82 (Length: 269)

Name: NF20783_low_82
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20783_low_82
NF20783_low_82
[»] chr2 (4 HSPs)
chr2 (1-100)||(28171239-28171338)
chr2 (115-156)||(28171004-28171045)
chr2 (13-93)||(28161449-28161529)
chr2 (117-156)||(28152857-28152896)
[»] chr3 (4 HSPs)
chr3 (166-258)||(1614715-1614807)
chr3 (170-205)||(8836518-8836553)
chr3 (170-205)||(55310453-55310488)
chr3 (188-252)||(1609559-1609623)
[»] chr5 (1 HSPs)
chr5 (170-205)||(26472421-26472456)


Alignment Details
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 28171338 - 28171239
Alignment:
Q  1 tctgcaattgtgaaggtcgcagtgcgtctgtgttttaacattttgtcgtatcatattcatgcctaagatcgaaaaccaatgcaaatgggagaaaagttat 100  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||    
T  28171338 tctgcaattgtacaggtcgcagtgcgtctgtgttttaacattttgtcgtattatattcatgactaagatcgataaccaatgcaaatgggagaaaagttat 28171239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 156
Target Start/End: Complemental strand, 28171045 - 28171004
Alignment:
Q  115 agagtgagtacagtcttcaaaataataagataagtcccacat 156  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  28171045 agagtgagtacactcttcaaaataataagataagtcccacat 28171004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 28161529 - 28161449
Alignment:
Q  13 aaggtcgcagtgcgtctgtgttttaacattttgtcgtatcatattcatgcctaagatcgaaaaccaatgcaaatgggagaa 93  Q
    |||||||||| |||| || ||||||||| ||| || ||| ||| |||||  |||||| |||||||||| ||||||||||||    
T  28161529 aaggtcgcagcgcgtttgcgttttaacaatttatcatattatagtcatgattaagattgaaaaccaatacaaatgggagaa 28161449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 156
Target Start/End: Complemental strand, 28152896 - 28152857
Alignment:
Q  117 agtgagtacagtcttcaaaataataagataagtcccacat 156  Q
    |||||||||| ||||||||||||||||| |||||||||||    
T  28152896 agtgagtacactcttcaaaataataagagaagtcccacat 28152857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 258
Target Start/End: Complemental strand, 1614807 - 1614715
Alignment:
Q  166 agattctagagcaagaaaatctattttcttgggttacaagcaaaatgtcaaaggtgttgtccttcttgatttaaacaataaaaccatcttcat 258  Q
    |||||||||||| |  ||||  |||||||||||||| ||||||| ||||||||||| | | ||||||||||||||||  |||||||| |||||    
T  1614807 agattctagagctaagaaatgcattttcttgggttataagcaaagtgtcaaaggtgctattcttcttgatttaaacaccaaaaccattttcat 1614715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 205
Target Start/End: Original strand, 8836518 - 8836553
Alignment:
Q  170 tctagagcaagaaaatctattttcttgggttacaag 205  Q
    |||||||||||||||||| |||||||||||||||||    
T  8836518 tctagagcaagaaaatctgttttcttgggttacaag 8836553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 205
Target Start/End: Original strand, 55310453 - 55310488
Alignment:
Q  170 tctagagcaagaaaatctattttcttgggttacaag 205  Q
    |||||||||||||||||| |||||||||||||||||    
T  55310453 tctagagcaagaaaatctgttttcttgggttacaag 55310488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 252
Target Start/End: Complemental strand, 1609623 - 1609559
Alignment:
Q  188 attttcttgggttacaagcaaaatgtcaaaggtgttgtccttcttgatttaaacaataaaaccat 252  Q
    |||||||||||||| ||||||| ||||||| ||  | | ||||||||||||||||  ||||||||    
T  1609623 attttcttgggttataagcaaagtgtcaaacgtactatacttcttgatttaaacaccaaaaccat 1609559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 205
Target Start/End: Original strand, 26472421 - 26472456
Alignment:
Q  170 tctagagcaagaaaatctattttcttgggttacaag 205  Q
    |||||||||||||||||| |||||||||||||||||    
T  26472421 tctagagcaagaaaatctgttttcttgggttacaag 26472456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University