View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_low_83 (Length: 266)
Name: NF20783_low_83
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_low_83 |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 20865426 - 20865158
Alignment:
| Q |
1 |
tgaaatggttcaagcatattattcatatttccttgaattaaatttattttaccatctagattc--------------tagactctatgaagtgctatttg |
86 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
20865426 |
tgaaatggttcaagcatattattcatatttccttgaattaaatttattttaccatctagattcgatattcgttacactagactctatgaagtgctatttg |
20865327 |
T |
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| Q |
87 |
gtccactctagtaattgtaatgcaacgtcaattacctaaagtttgatgggaataggaaaaattgaaatttgttctgtatatttagtagacaatttataat |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20865326 |
gtccactctagtaattgtaatgcaacgtcaattacctaaagtttgatgggaataggaaaaattgaaatttgttctgtatatttagtagacaatttataat |
20865227 |
T |
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| Q |
187 |
tttgattgattgtttctttgaaaagtcgttaattggttttatatttatatttttctatcaagtgttcat |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20865226 |
tttgattgattgtttctttgaaaagtcgttaattggttttatatttatatttttctatcaagtgttcat |
20865158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 134168 - 134051
Alignment:
| Q |
1 |
tgaaatggttcaagcatattattcatatttccttgaattaaatttattttaccatctagattctagactctatgaagtgctatttggtccactctagtaa |
100 |
Q |
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||||||| |||||||||||||||| |||||||||||||||| ||||||||||| |||||| |||||||| | ||||||| | |||||||||||||| |
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| T |
134168 |
tgaaatgagtcaagcatattattcacatttccttgaattaaacatattttaccat-tagattttagactctgcaaggtgctatatagtccactctagtaa |
134070 |
T |
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| Q |
101 |
ttgtaatgcaacgtcaatt |
119 |
Q |
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|||||||| |||||||||| |
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| T |
134069 |
ttgtaatgtaacgtcaatt |
134051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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