View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20783_low_9 (Length: 578)
Name: NF20783_low_9
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_low_9 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 6 - 578
Target Start/End: Original strand, 34437083 - 34437642
Alignment:
| Q |
6 |
agtagcataggccaaacctctccatttgtctttgtcagtttgcttgctttcatcaatctcagcagcaacaattttgaatcttccagatgaaacctttgtg |
105 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34437083 |
agtatcataggccaaacctctccatctgtctttgtcagtttgcttgctttcattaatctcagcagcaacaattttgaatcttccagatgaaacctttgtg |
34437182 |
T |
|
| Q |
106 |
tttggtaacctcgaggtaactttctttaagctggttccaaagaatgatgaatttggaactgaagctactgctccagagctattcaaactcaactgcaata |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34437183 |
tttggtaacctcgaggtaactttctttaagctggttccaaagaatgatgaacttggaactgaagctactgctccagagctattcaaactcaactgcaata |
34437282 |
T |
|
| Q |
206 |
tcacagtattatcctatgagtcacatcggacatgacactaatacgtagacattggtaatcatttaagaaaattaaattattgaatgtaagtcaacacatg |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34437283 |
tcacagtattatcctatgagtcacatcggacatgacactaatacgtagacattggtaatcatttaagaaaattaaattattgaatgtaagtcaacacatg |
34437382 |
T |
|
| Q |
306 |
tgtcggtagcatgttggtgtatgagacaaatacatgttagacactagacacgactttaatctaaagtatcagttctacttaggaattagccactcttttg |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
34437383 |
tgtcggtagcatgttggtgtatgagacaaatacatgttagacactagacac-------------agtatcagttctacttaggaattagccactcttttg |
34437469 |
T |
|
| Q |
406 |
tactatttatactatctgaaagtttactcaaatgctatagacatgcaatccagaccatcatactatatttataaatcaaagtaccagggattgtgccgct |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34437470 |
tactatttatactatctgaaagtttactcaaatgctatagacatgcaatccagaccatcatactatatttataaatcaaagtaccagggattgttccgct |
34437569 |
T |
|
| Q |
506 |
agattagtcggtccttgcccgataccaattaataagtcaactgagatgtacgatcttaataggacggtctaga |
578 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
34437570 |
agattagtcggtccttgcccgataccaattaataagtcaactgagatgtacgatcttaataggtcggtctaga |
34437642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University