View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_low_93 (Length: 251)
Name: NF20783_low_93
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_low_93 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 21243027 - 21243259
Alignment:
| Q |
1 |
cgatggggaggtttgagttagagggttttttgaaggtgattgagaagtataaagtgacgaacttgtgggttgtgccaccgatgattcttgctttagcgaa |
100 |
Q |
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| T |
21243027 |
cgatggggaggtttgagttagagggttttttgaaggtgattgagaagtataaagtgacgaacttgtgggttgtgccaccgatgattcttgctttagcgaa |
21243126 |
T |
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| Q |
101 |
acaaagtgtggttgggaaatatgatgtttcttctctgaagagtattgggtctggtgctgctcctcttgggaaggaattgatggaagagtgtgctcgacgt |
200 |
Q |
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| T |
21243127 |
acagagtgtggttgggaaatatgatgtttcttctttgaagagtattgggtctggtgctgctcctcttgggaaggaattgatggaagagtgtgctcgacat |
21243226 |
T |
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| Q |
201 |
ctacctcatgttgctatttatcaggtaagaccg |
233 |
Q |
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| T |
21243227 |
ctacctcatgttgctatttatcaggtaagaccg |
21243259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 5 - 148
Target Start/End: Original strand, 21258797 - 21258939
Alignment:
| Q |
5 |
ggggaggtttgagttagagggttttttgaaggtgattgagaagtataaagtgacgaacttgtgggttgtgccaccgatgattcttgctttagcgaaacaa |
104 |
Q |
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| T |
21258797 |
ggggagatttgagttagagggtttt-tgaaggtgattgaaaagtatagagtgacaactttgtgggttgtgccatcgatgaatcttgctttggcgaaacag |
21258895 |
T |
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| Q |
105 |
agtgtggttgggaaatatgatgtttcttctctgaagagtattgg |
148 |
Q |
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| T |
21258896 |
agtgtggttgggaaatatgatgtttcttcgttgaagagtattgg |
21258939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 21254294 - 21254357
Alignment:
| Q |
5 |
ggggaggtttgagttagagggttttttgaaggtgattgagaagtataaagtgacgaacttgtggg |
69 |
Q |
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| T |
21254294 |
ggggaggtttgagttagagggtttt-tgaaggtgattgagaagcatagagtgacgaatttgtggg |
21254357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 194
Target Start/End: Complemental strand, 40809348 - 40809224
Alignment:
| Q |
70 |
ttgtgccaccgatgattcttgctttagcgaaacaaagtgtggttgggaaatatgatgtttcttctctgaagagtattgggtctggtgctgctcctcttgg |
169 |
Q |
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| T |
40809348 |
ttgtgccaccgattgtactcgctctagcgaaacatggtttggttgataagtatgatctttcgagtttgaagtatattggttctggtgctgctcctcttgg |
40809249 |
T |
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| Q |
170 |
gaaggaattgatggaagagtgtgct |
194 |
Q |
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| T |
40809248 |
gaaagagttgatggaagagtgtgct |
40809224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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