View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20783_low_96 (Length: 249)

Name: NF20783_low_96
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20783_low_96
NF20783_low_96
[»] chr4 (3 HSPs)
chr4 (1-238)||(21242674-21242911)
chr4 (1-238)||(21258450-21258680)
chr4 (29-229)||(21253939-21254143)


Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 21242911 - 21242674
Alignment:
Q  1 atccatgtttatcatcaacgatgctgcgatgaagttcttgtgtgtgagaatcacacctttgctcactcctgtagttcctgatgagtacaaaagtgccgct 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21242911 atccatgtttatcatcaacgacgctgcgatgaagttcttgtgtgtgagaatcacacctttgctcactcctgtagttcctgatgagtacaaaagtgccgct 21242812  T
Q  101 gtatcggtctgtttcacatcgttttctggtaattctgttacttcccctgctgattcaatcaacgcctcaaaactcttgaagtttgaatatgaacccgttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21242811 gtatcggtctgtttcacatcgttttctggtaattctgttacttcccctgctgattcaatcaacgcctcaaaactcttgaagtttgaatatgaacccgttg 21242712  T
Q  201 cattacctattagatataaagtttgttatgtagagaat 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21242711 cattacctattagatataaagtttgttatgtagagaat 21242674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 21258680 - 21258450
Alignment:
Q  1 atccatgtttatcatcaacgatgctgcgatgaagttcttgtgtgtgagaatcacacctttgctcactcctgtagttcctgatgagtacaaaagtgccgct 100  Q
    |||||||||||||||||| || |  ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||          
T  21258680 atccatgtttatcatcaatgaagtcgcgatgaagttcttgtgggtgagtatcacacctttgctcactcctgtagttcctgatgagtacagaagt------ 21258587  T
Q  101 gtatcggtctgtttcacatcgttttctggtaattctgttacttcccctgctgattcaatcaacgcctcaaaactcttgaagtttgaatatgaacccgttg 200  Q
     | || ||||||||||| | | ||||||||| ||||||||||||||| |||||||| |||||||||||||||||| ||||||| |||| | |||| ||||    
T  21258586 -tgtcagtctgtttcacgttgctttctggtatttctgttacttccccagctgattctatcaacgcctcaaaactcgtgaagttcgaatttcaacctgttg 21258488  T
Q  201 cattacctattagatataaagtttgttatgtagagaat 238  Q
    |||||||||| |||||||||||||||||| ||| ||||    
T  21258487 cattacctatcagatataaagtttgttatatagcgaat 21258450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 29 - 229
Target Start/End: Complemental strand, 21254143 - 21253939
Alignment:
Q  29 atgaagttcttgtgtgtgagaatcacacctttgctcactcctgtagttcctgatgagtacaaaagtgccgctgtatcggtctgtttcacatcgttttctg 128  Q
    |||| ||||||||| || || ||||| || |||||||||||||| ||||||||||||||||| |  |||||||||||| | |||||||||||||||||||    
T  21254143 atgacgttcttgtgggtaagtatcacgcccttgctcactcctgttgttcctgatgagtacaacaaagccgctgtatcgctttgtttcacatcgttttctg 21254044  T
Q  129 gtaattctgttacttcccctgctgattcaatcaacgcctcaaaactcttgaagtttgaatatgaacccgttgc----attacctattagatataaagttt 224  Q
    |||||||||||||||| | ||||| ||||||||||| |||||||||  |||||||||||| |||||||||| |    |||||||||||||| ||||||||    
T  21254043 gtaattctgttacttctcatgctgtttcaatcaacgactcaaaactggtgaagtttgaatttgaacccgttacattaattacctattagatgtaaagttt 21253944  T
Q  225 gttat 229  Q
    |||||    
T  21253943 gttat 21253939  T

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