View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20783_low_97 (Length: 249)
Name: NF20783_low_97
Description: NF20783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20783_low_97 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 35294465 - 35294704
Alignment:
| Q |
1 |
catggagctggatatcttttttgtttgggaaaaggttatcaacaggagtctacttgtgtctcatgttccagcacattctcaatgggcagatattctcact |
100 |
Q |
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| T |
35294465 |
catggagctggatatcttttttgttcgggaaaaggttatcaacaggagtctacttgtgtctcatgttccagcacattctcaatgggcagatattctcact |
35294564 |
T |
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| Q |
101 |
aagccattatctacatccagatttttggaactcagagacaaactgagagtttcagacctcctcagtttgaggggggaatgttagagtacatagagtccaa |
200 |
Q |
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| T |
35294565 |
aagccattatctacatccagatttttggaactcagagacaaactgagagtttcagacctccttagtttgaggggggaatgttagagtacatagagtccaa |
35294664 |
T |
|
| Q |
201 |
ggctcttacagtaactagtcttagatagttcaagtattat |
240 |
Q |
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| T |
35294665 |
ggctcttactgtaactagtcttagatagttcaagtattat |
35294704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 9 - 195
Target Start/End: Complemental strand, 26348551 - 26348365
Alignment:
| Q |
9 |
tggatatcttttttgtttgggaaaaggttatcaacaggagtctacttgtgtctcatgttccagcacattctcaatgggcagatattctcactaagccatt |
108 |
Q |
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| T |
26348551 |
tggatatattttttgttagagaaaaagttcttcagaggagtctgcttgtttctcatgttccagcacattatcagtgggcagacatcctcacgaagccttt |
26348452 |
T |
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| Q |
109 |
atctacatccagatttttggaactcagagacaaactgagagtttcagacctcctcagtttgaggggggaatgttagagtacatagag |
195 |
Q |
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| T |
26348451 |
atctacatccaagttcttggaactcagagacaaactgagggttaccaacctcctcaatttgaggggggaatgttagagtatatagag |
26348365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 35289608 - 35289670
Alignment:
| Q |
178 |
atgttagagtacatagagtccaaggctcttacagtaactagtcttagatagttcaagtattat |
240 |
Q |
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| T |
35289608 |
atgttagagtacatagagtctaaggctcttactgtaactagtcttagatagttcaagtattat |
35289670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 44 - 195
Target Start/End: Original strand, 24530617 - 24530768
Alignment:
| Q |
44 |
aggagtctacttgtgtctcatgttccagcacattctcaatgggcagatattctcactaagccattatctacatccagatttttggaactcagagacaaac |
143 |
Q |
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| T |
24530617 |
aggagtctgcttgtttctcatgttccagcacattatcaatggacatacattctcaccaagcctctatctacatccaggttcttggaactcagagacaaac |
24530716 |
T |
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| Q |
144 |
tgagagtttcagacctcctcagtttgaggggggaatgttagagtacatagag |
195 |
Q |
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| T |
24530717 |
tgagggttaccaacctcctcagtttgaggggggaatgttagagtatatagag |
24530768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 31679623 - 31679561
Alignment:
| Q |
178 |
atgttagagtacatagagtccaaggctcttacagtaactagtcttagatagttcaagtattat |
240 |
Q |
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||||||||||| |||||||| ||||||||||| | |||||||||||||||||||||||||||| |
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| T |
31679623 |
atgttagagtatatagagtctaaggctcttactggaactagtcttagatagttcaagtattat |
31679561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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