View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20784_high_1 (Length: 346)
Name: NF20784_high_1
Description: NF20784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20784_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 13 - 323
Target Start/End: Complemental strand, 32829095 - 32828785
Alignment:
| Q |
13 |
tatactagaaatcacggtgagtgtaatgtgggtcatgatttgaaccctgattcaggggtgaggagaagctcgcgggctaggcgtgccccggttttgcttg |
112 |
Q |
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| T |
32829095 |
tatactagaaatcacggtgagtgtaatgtgggtcatgatttgaaccctgattcaggggtgaggagaagctcgcgggctaggcgtgccccggttttgcttg |
32828996 |
T |
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| Q |
113 |
atgtctctcccacaccgaagaagaaacggttgaagttaggaaaggatgtagtgccgaagagtgtggagggtgataaaggtgtagggagagaaagtggggg |
212 |
Q |
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| T |
32828995 |
atgtctctcccacaccgaagaagaaacggttgaagttaggaaaggatgtagttccgaagagtgtggagggtgataaaggtgtagggagagaaagtggggg |
32828896 |
T |
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| Q |
213 |
ttctggtggtgggaattggagtttgaggtcaagatcgaggggtaagaacgtggaatttgaagtgaaggaggagagggaattgagtggtaggaaaaggaag |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32828895 |
ttctggtggtgggaattggagtttgaggtcaagatcgaggggtaagaacgtggaatttgaagtgaaggaggagagggaattgagtggtaggaaaaggaag |
32828796 |
T |
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| Q |
313 |
ttgtttgatga |
323 |
Q |
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||||||||||| |
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| T |
32828795 |
ttgtttgatga |
32828785 |
T |
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