View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20785_high_2 (Length: 520)
Name: NF20785_high_2
Description: NF20785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20785_high_2 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 44 - 520
Target Start/End: Complemental strand, 6185895 - 6185423
Alignment:
| Q |
44 |
atcttgacaatgaatctatgctgaaattcgaaagcattattcaaggtatggcagctagtagtcttcgttgcatcgctttagcgtgtacagaagtctcaga |
143 |
Q |
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| T |
6185895 |
atcttgacaatgaatctatgctgaaattcgaaagcattattcaaggtatggcagctagtagtcttcgttgcatcgctttagcgtgtacagaagtctcaga |
6185796 |
T |
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| Q |
144 |
cgaaaagctaggacatgaaggagacaacaccaagatggtggtaaaagagaatgatttaacattgttaggacttgtcggcattaaggatccatgtcgccca |
243 |
Q |
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| T |
6185795 |
cgaaaagctaggacatgaaggagacaacaccaagatggtggtaaaagagaatgatttaacattgttaggacttgtcggcattaaggatccatgtcgccca |
6185696 |
T |
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| Q |
244 |
ggggtgaagacagcggtggaagcttgccaacatgctggtgtgaatgtcaaaatgatcacaggtattgctaaaatatctcatttatcagtaacttaatctt |
343 |
Q |
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| T |
6185695 |
ggggtgaagacagcggtggaagcttgccaacatgccggtgtgaatgtcaaaatgattacaggtattactataatatctcatttatgagtaacttgatctt |
6185596 |
T |
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| Q |
344 |
tcgatcgatattgactacaaaatcctctatttatacatacgagtctatacgaaaatgatggcaaactttatttctgattataataggtgacaatgttttc |
443 |
Q |
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| T |
6185595 |
t-ga---atatcgaatataaaatcgtctatttatacatacaagtctacatgaaaatgatgccgaactttatctctgattataataggtgacaatgttttc |
6185500 |
T |
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| Q |
444 |
actgcaaaagctatagcatttgaatgtggaattcttcaacctaatcaggacacagatgaaacggtggttgaaggcga |
520 |
Q |
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| T |
6185499 |
actgcgaaagctatagcatttgaatgtggaattcttcaacctaatcaggacatagatgaaacggtggttgaaggcga |
6185423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 6185880 - 6185929
Alignment:
| Q |
1 |
gattcattgtcaagatctttcaaaattccataaccatcatagtatcttga |
50 |
Q |
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| T |
6185880 |
gattcattgtcaagatctttcaaaattccataaccatcatagtatcttga |
6185929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 174; Significance: 2e-93; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 44 - 329
Target Start/End: Complemental strand, 4236802 - 4236517
Alignment:
| Q |
44 |
atcttgacaatgaatctatgctgaaattcgaaagcattattcaaggtatggcagctagtagtcttcgttgcatcgctttagcgtgtacagaagtctcaga |
143 |
Q |
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| T |
4236802 |
atcttgacaatgaaaccatgttgaaattcgaaaggattattcaaggtatggcggctagtagtcttcgttgcatcgctttagcgtatacaaaagttacaga |
4236703 |
T |
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| Q |
144 |
cgaaaagctaggacatgaaggagacaacaccaagatggtggtaaaagagaatgatttaacattgttaggacttgtcggcattaaggatccatgtcgccca |
243 |
Q |
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| T |
4236702 |
cgaagagcttgaagttgaaggagatatgaacaagatggtggtaaaagacaatggtttaacattgttaggacttgtaggcattaaggatccatgtcgcccg |
4236603 |
T |
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| Q |
244 |
ggggtgaagacagcggtggaagcttgccaacatgctggtgtgaatgtcaaaatgatcacaggtattgctaaaatatctcatttatc |
329 |
Q |
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| T |
4236602 |
ggggtgaagacgacagtggaagcttgccaacatgctggtgtgaatgtcaaaatgattacaggtattactaaaatatcttatttatc |
4236517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 428 - 520
Target Start/End: Complemental strand, 4236391 - 4236299
Alignment:
| Q |
428 |
aggtgacaatgttttcactgcaaaagctatagcatttgaatgtggaattcttcaacctaatcaggacacagatgaaacggtggttgaaggcga |
520 |
Q |
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| T |
4236391 |
aggtgacaatgttttcactgcaaaagctatagcatttgaatgtggaattcttcaacctaatcaggacacggatgaaacagtggttgaaggcga |
4236299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 4236789 - 4236836
Alignment:
| Q |
3 |
ttcattgtcaagatctttcaaaattccataaccatcatagtatcttga |
50 |
Q |
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| T |
4236789 |
ttcattgtcaagatctttcgaaattccaaaaccatcatggtattttga |
4236836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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