View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20785_high_6 (Length: 338)
Name: NF20785_high_6
Description: NF20785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20785_high_6 |
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| [»] scaffold0168 (1 HSPs) |
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Alignment Details
Target: scaffold0168 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: scaffold0168
Description:
Target: scaffold0168; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 16 - 329
Target Start/End: Complemental strand, 18400 - 18087
Alignment:
| Q |
16 |
tgtattacatatagggttgaataactcaaccagtttggtctaaagaatcaaaggagttgaagaattaaagatacatgtttcaagtctaggcaatgnnnnn |
115 |
Q |
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| T |
18400 |
tgtattacatatagggttgaataactcaaccagtttgatctaaagaatcaaaggagttgaagaattaaagatacatgtttcaagtctaggcaatgaaaaa |
18301 |
T |
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| Q |
116 |
nnntactaacatattaacatttgtcattnnnnnnnntgtatattgcagttgaaagaatttcaattaccaaacttgatagctaagcaaaatcaaggagata |
215 |
Q |
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| T |
18300 |
aaatactaacatattaacatttgtcattaaaaaaaatgtatattgcagttgaaagaatttcaattaccaaacttgatagctaagcaaaatcaaggagata |
18201 |
T |
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| Q |
216 |
attctcaaagcctgacaaagataacacaagtaaggtgaattttatacatactggacggaatacccaagggtttcaccggtttatttaaagactattactt |
315 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
18200 |
attctcaaagcctgacaaagataacacaggtaaggtgaattttatacatactagacggaatacccaagggtttcaccggtttatctaaatactattactt |
18101 |
T |
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| Q |
316 |
ttcccaccctatgc |
329 |
Q |
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||| |||| ||||| |
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| T |
18100 |
ttcacaccttatgc |
18087 |
T |
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