View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20785_low_1 (Length: 580)
Name: NF20785_low_1
Description: NF20785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20785_low_1 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 19 - 571
Target Start/End: Original strand, 6184894 - 6185446
Alignment:
| Q |
19 |
gttagtaataagaggctttgttctaccaactggtttttcatccattaattccttagtaggtttttcagttgcaagagccaaagcacctaatgtatccata |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6184894 |
gttagtaataagaggctttgttctaccaactggtttttcatccattaattccttagtaggtttttcagttgcaagagccaaagcacctaatgtatccata |
6184993 |
T |
|
| Q |
119 |
attaaattcacccataataattgaactgctgttaatggtacttcgccggctgaaaccgcggctacgaaattgataacaagtgctgccacattcactgtta |
218 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||||||||||||| |
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|
| T |
6184994 |
atcaaattcacccataataattgaactgctgttaatggtacttcaccggctgaaaccgccgcaacgaaattgataacaagggctgccacattcactgtta |
6185093 |
T |
|
| Q |
219 |
gttgaaattgaatgaatttttgaatgttgttgtaaacacatcttccccagtttaaaactgttactatagatgcaaaattgtcatctaatataacaatatc |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
6185094 |
gttgaaattgaatgaatttttgaatgttgttgtaaacacatcttccccagtttaacactgttacgatagatgcaaaattgtcatctaatataacaatatc |
6185193 |
T |
|
| Q |
319 |
tgaactctcttttgctacttctgtaccttgaattcccattgaaagaccgatatcggcttctttcaatgccggtgcatcgtttgttccatctcctgttaca |
418 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6185194 |
tgaactctcttttgcaacttcagtaccttgaattcccattgaaagtccgatatcggcttctttcaatgccggtgcatcgtttgttccatctcctgttaca |
6185293 |
T |
|
| Q |
419 |
gcaactacatgacctttttgttttaagcattgaaccattagaagtttgtcaaatggagatgatcttgccatcacacatattttttcaaccttttctaatc |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6185294 |
gcaactacatgacctttttgttttaagcattgaaccattagaagtttgtcaaatggagatgatcttgccatcacacatattttttcaaccttttctaatc |
6185393 |
T |
|
| Q |
519 |
tctcttcgtgcgtaaagttgcgaaactgttcgccttcaaccaccgtttcatct |
571 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6185394 |
tctcttcgtgcgtaaagttgcgaaattgttcgccttcaaccaccgtttcatct |
6185446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 19 - 570
Target Start/End: Original strand, 4235770 - 4236321
Alignment:
| Q |
19 |
gttagtaataagaggctttgttctaccaactggtttttcatccattaattccttagtaggtttttcagttgcaagagccaaagcacctaatgtatccata |
118 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||| || ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
4235770 |
gttagttataagaggctttgttctaccaacaggttctttatccattaaatccttagtaggtttttcagttgcaagagccaatgcacctaatgtatccata |
4235869 |
T |
|
| Q |
119 |
attaaattcacccataataattgaactgctgttaatggtacttcgccggctgaaaccgcggctacgaaattgataacaagtgctgccacattcactgtta |
218 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| || |||||||| ||||||||||| || || ||||| |||||||||||||||||||||||||||| |
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|
| T |
4235870 |
atcaaattcacccataataattgaactgctgttaacggaacttcgcctgctgaaaccgccgcgacaaaatttataacaagtgctgccacattcactgtta |
4235969 |
T |
|
| Q |
219 |
gttgaaattgaatgaatttttgaatgttgttgtaaacacatcttccccagtttaaaactgttactatagatgcaaaattgtcatctaatataacaatatc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
4235970 |
attgaaattgaatgaatttttgaatgttgttgtaaacacatcttccccaatttataactgttacaatagatgcaaaattgtcatctaatataacaatatc |
4236069 |
T |
|
| Q |
319 |
tgaactctcttttgctacttctgtaccttgaattcccattgaaagaccgatatcggcttctttcaatgccggtgcatcgtttgttccatctcctgttaca |
418 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||| ||||| |||||| |
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|
| T |
4236070 |
tgaactctcttttgctacttcagtaccttgaattcccattgaaagtccaatatcagcttctttcaatgctggtgcatcgtttgttccgtctccggttaca |
4236169 |
T |
|
| Q |
419 |
gcaactacatgacctttttgttttaagcattgaaccattagaagtttgtcaaatggagatgatcttgccatcacacatattttttcaaccttttctaatc |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||| | ||||| ||||| || | || | |
|
|
| T |
4236170 |
gcaactacatgacctttttgttttaagcattgtaccattagaagtttatcaaatggagaagatcttgccatcacagagattttctcaactttcgccaacc |
4236269 |
T |
|
| Q |
519 |
tctcttcgtgcgtaaagttgcgaaactgttcgccttcaaccaccgtttcatc |
570 |
Q |
| |
|
|||||||||| || ||||| ||||| ||||||||||||||||| |||||||| |
|
|
| T |
4236270 |
tctcttcgtgtgtgaagttacgaaattgttcgccttcaaccactgtttcatc |
4236321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 23 - 157
Target Start/End: Complemental strand, 30441533 - 30441398
Alignment:
| Q |
23 |
gtaataagaggctttgttctaccaac-tggtttttcatccattaattccttagtaggtttttcagttgcaagagccaaagcacctaatgtatccataatt |
121 |
Q |
| |
|
||||||||||||||| |||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30441533 |
gtaataagaggctttattctaccaacaattttttttatccattagttccttagtaggtttttcagttgcaagagccaaagcatctaatgtatccataatc |
30441434 |
T |
|
| Q |
122 |
aaattcacccataataattgaactgctgttaatggt |
157 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||| |
|
|
| T |
30441433 |
aaattcacccataataattgaactgatattaatggt |
30441398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 4e-61; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 186 - 405
Target Start/End: Original strand, 19592829 - 19593039
Alignment:
| Q |
186 |
aattgataacaagtgctgccacattcactgttagttgaaattgaatgaatttttgaatgttgttgtaaacacatcttccccagtttaaaactgttactat |
285 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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|
| T |
19592829 |
aattgataacaagtgctgccacattcact---------aattgaatgaatttttgaatgttgttgtaaacacatcttccccaatttaaaattgttactat |
19592919 |
T |
|
| Q |
286 |
agatgcaaaattgtcatctaatataacaatatctgaactctcttttgctacttctgtaccttgaattcccattgaaagaccgatatcggcttctttcaat |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||| |||| ||||| | |||| |||||||||| | |
|
|
| T |
19592920 |
agatgcaaaattgtcatctaatataacaatatctgagctctcttttgcaacttcggtaccttgaatttccatggaaagttcaatattagcttctttcagt |
19593019 |
T |
|
| Q |
386 |
gccggtgcatcgtttgttcc |
405 |
Q |
| |
|
|| | |||||| ||| |||| |
|
|
| T |
19593020 |
gctgatgcatcatttcttcc |
19593039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 61 - 489
Target Start/End: Original strand, 38356756 - 38357184
Alignment:
| Q |
61 |
cattaattccttagtaggtttttcagttgcaagagccaaagcacctaatgtatccataattaaattcacccataataattgaactgctgttaatggtact |
160 |
Q |
| |
|
|||||| ||||| ||||| |||| ||||| || ||||||||||||| |||||||||||| | ||||||||| | | |||||||| |||||| || || |
|
|
| T |
38356756 |
cattaactcctttgtaggcctttctgttgctagtgccaaagcacctagtgtatccataatgagattcacccaaagaagttgaactgttgttaagggaaca |
38356855 |
T |
|
| Q |
161 |
tcgccggctgaaaccgcggctacgaaattgataacaagtgctgccacattcactgttagttgaaattgaatgaatttttgaatgttgttgtaaacacatc |
260 |
Q |
| |
|
|| || | ||||| || || | || || || ||||||||||| |||||||||||||||||||| ||||| ||||| || ||||||||||||||||||| |
|
|
| T |
38356856 |
tcaccagaagaaactgctgcaataaagtttatcacaagtgctgcaacattcactgttagttgaaactgaataaatttctggatgttgttgtaaacacatc |
38356955 |
T |
|
| Q |
261 |
ttccccagtttaaaactgttactatagatgcaaaattgtcatctaatataacaatatctgaactctcttttgctacttctgtaccttgaattcccattga |
360 |
Q |
| |
|
||||||| ||||||| ||| | | ||| || ||||| ||||| || || ||||| ||||| ||||| || ||||| || ||||| |||||||| || |
|
|
| T |
38356956 |
ttccccaccttaaaacagttgcaacagaattgaagttgtcgtctaagatgacgatatcggaactttctttggcgacttcggttccttggattcccataga |
38357055 |
T |
|
| Q |
361 |
aagaccgatatcggcttctttcaatgccggtgcatcgtttgttccatctcctgttacagcaactacatgacctttttgttttaagcattgaaccattaga |
460 |
Q |
| |
|
||| || ||||| |||||||| || || |||||||||||||| || || ||||| || ||||||||||||||||| | | |||||||||| ||||| | | |
|
|
| T |
38357056 |
aagtcctatatcagcttcttttaaggcaggtgcatcgtttgtgccgtcgcctgtgaccgcaactacatgacctttctttcttaagcattgcaccatcaaa |
38357155 |
T |
|
| Q |
461 |
agtttgtcaaatggagatgatcttgccat |
489 |
Q |
| |
|
|||||||| | || |||||||||||||| |
|
|
| T |
38357156 |
agtttgtccataggggatgatcttgccat |
38357184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 124 - 162
Target Start/End: Original strand, 19592786 - 19592824
Alignment:
| Q |
124 |
attcacccataataattgaactgctgttaatggtacttc |
162 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
19592786 |
attcacccataataattgaactgttattaatggtacttc |
19592824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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