View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20785_low_10 (Length: 243)

Name: NF20785_low_10
Description: NF20785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20785_low_10
NF20785_low_10
[»] chr3 (6 HSPs)
chr3 (37-205)||(34705436-34705604)
chr3 (196-242)||(34704856-34704902)
chr3 (2-38)||(52126443-52126479)
chr3 (1-36)||(18319605-18319640)
chr3 (1-40)||(46920103-46920142)
chr3 (5-38)||(11031785-11031818)
[»] chr4 (5 HSPs)
chr4 (160-236)||(18978098-18978174)
chr4 (2-40)||(54207233-54207271)
chr4 (1-38)||(34967090-34967127)
chr4 (2-37)||(9117443-9117478)
chr4 (4-36)||(27742896-27742928)
[»] chr8 (2 HSPs)
chr8 (1-35)||(11465584-11465618)
chr8 (1-36)||(3428480-3428515)
[»] chr1 (2 HSPs)
chr1 (2-40)||(38006996-38007034)
chr1 (2-38)||(51083358-51083394)
[»] chr7 (1 HSPs)
chr7 (1-38)||(16850099-16850136)


Alignment Details
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 37 - 205
Target Start/End: Complemental strand, 34705604 - 34705436
Alignment:
Q  37 cttatgttttatggtttattttgacgcttgaatgatctttgtgtaattgtcatttactctacggtttctgattgtaatatacgaacattgtagtgcttaa 136  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  34705604 cttatgttttatggtttattttgacacttgaatgatccttgtgtaattgtcatttactctaaggtttctgattgtaatatacgaacattgtagtgcttaa 34705505  T
Q  137 tctgtaattaagttttggctttctttggtttgacatcatttaccaccaaaaatctattgtagttgcatt 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34705504 tctgtaattaagttttggctttctttggtttgacatcatttaccaccaaaaatctattgtagttgcatt 34705436  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 196 - 242
Target Start/End: Complemental strand, 34704902 - 34704856
Alignment:
Q  196 tagttgcattgttattttaataaatttttattgtttttactctgtgc 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  34704902 tagttgcattgttattttaataaatttttattgtttttactctgtgc 34704856  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 52126443 - 52126479
Alignment:
Q  2 aggaataaattttataacctgaaaacaaacaccccct 38  Q
    ||||||||||||||||||||| |||||||||||||||    
T  52126443 aggaataaattttataacctggaaacaaacaccccct 52126479  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 18319640 - 18319605
Alignment:
Q  1 caggaataaattttataacctgaaaacaaacacccc 36  Q
    |||||||||||||||||||||| |||||||||||||    
T  18319640 caggaataaattttataacctggaaacaaacacccc 18319605  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 46920142 - 46920103
Alignment:
Q  1 caggaataaattttataacctgaaaacaaacaccccctta 40  Q
    ||||||||||||||||||| || |||||||||||||||||    
T  46920142 caggaataaattttataacatggaaacaaacaccccctta 46920103  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 11031785 - 11031818
Alignment:
Q  5 aataaattttataacctgaaaacaaacaccccct 38  Q
    |||||||||||||||||| |||||||||||||||    
T  11031785 aataaattttataacctggaaacaaacaccccct 11031818  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 160 - 236
Target Start/End: Original strand, 18978098 - 18978174
Alignment:
Q  160 tttggtttgacatcatttaccaccaaaaatctattgtagttgcattgttattttaataaatttttattgtttttact 236  Q
    |||||||||||| || ||||||||||||| || ||||| |||||||||| |||||||| | |||| || ||||||||    
T  18978098 tttggtttgacaccacttaccaccaaaaacctcttgtacttgcattgttgttttaatagagttttcttatttttact 18978174  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 54207271 - 54207233
Alignment:
Q  2 aggaataaattttataacctgaaaacaaacaccccctta 40  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  54207271 aggaataaattttataacctggaaacaaacaccccctta 54207233  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 34967127 - 34967090
Alignment:
Q  1 caggaataaattttataacctgaaaacaaacaccccct 38  Q
    |||||||||||||||||||||| |||||||||||||||    
T  34967127 caggaataaattttataacctggaaacaaacaccccct 34967090  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 9117478 - 9117443
Alignment:
Q  2 aggaataaattttataacctgaaaacaaacaccccc 37  Q
    ||||||||||||||||||||| ||||||||||||||    
T  9117478 aggaataaattttataacctggaaacaaacaccccc 9117443  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 27742896 - 27742928
Alignment:
Q  4 gaataaattttataacctgaaaacaaacacccc 36  Q
    ||||||||||||||||||| |||||||||||||    
T  27742896 gaataaattttataacctggaaacaaacacccc 27742928  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 11465618 - 11465584
Alignment:
Q  1 caggaataaattttataacctgaaaacaaacaccc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  11465618 caggaataaattttataacctgaaaacaaacaccc 11465584  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 3428515 - 3428480
Alignment:
Q  1 caggaataaattttataacctgaaaacaaacacccc 36  Q
    |||||||||||||||||||||| |||||||||||||    
T  3428515 caggaataaattttataacctggaaacaaacacccc 3428480  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 38007034 - 38006996
Alignment:
Q  2 aggaataaattttataacctgaaaacaaacaccccctta 40  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  38007034 aggaataaattttataacctggaaacaaacaccccctta 38006996  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 51083394 - 51083358
Alignment:
Q  2 aggaataaattttataacctgaaaacaaacaccccct 38  Q
    |||||||||||||||||| || |||||||||||||||    
T  51083394 aggaataaattttataacttggaaacaaacaccccct 51083358  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 16850099 - 16850136
Alignment:
Q  1 caggaataaattttataacctgaaaacaaacaccccct 38  Q
    |||||||||||||||||||||| |||||||||||||||    
T  16850099 caggaataaattttataacctggaaacaaacaccccct 16850136  T

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