View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20785_low_11 (Length: 238)

Name: NF20785_low_11
Description: NF20785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20785_low_11
NF20785_low_11
[»] chr4 (8 HSPs)
chr4 (72-238)||(34967203-34967370)
chr4 (72-238)||(27742651-27742817)
chr4 (94-238)||(9117555-9117699)
chr4 (94-238)||(54207348-54207492)
chr4 (18-65)||(27742553-27742600)
chr4 (18-65)||(9117755-9117802)
chr4 (18-65)||(34967421-34967468)
chr4 (18-65)||(54207548-54207595)
[»] chr3 (7 HSPs)
chr3 (94-238)||(46920218-46920362)
chr3 (94-238)||(11031561-11031705)
chr3 (94-238)||(18319716-18319860)
chr3 (72-238)||(52126190-52126366)
chr3 (18-65)||(11031458-11031505)
chr3 (18-65)||(18319916-18319963)
chr3 (18-65)||(46920418-46920465)
[»] chr7 (3 HSPs)
chr7 (94-238)||(16849879-16850023)
chr7 (72-238)||(31738741-31738917)
chr7 (18-65)||(16849776-16849823)
[»] chr1 (3 HSPs)
chr1 (94-238)||(38007111-38007255)
chr1 (72-238)||(51083471-51083647)
chr1 (18-65)||(38007311-38007358)
[»] chr8 (4 HSPs)
chr8 (94-238)||(11465694-11465838)
chr8 (94-238)||(3428591-3428735)
chr8 (18-65)||(3428791-3428838)
chr8 (18-65)||(11465894-11465941)


Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 72 - 238
Target Start/End: Complemental strand, 34967370 - 34967203
Alignment:
Q  72 aatcaacacgttcagtgtattgagaaattaattggcagttgaaaaaacatggt-ggtagtggggttttcatgtagcaaggcaaatgtcattcttaggaat 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  34967370 aatcaacacgttcagtgtattgagaaattaattggcagttgaaaaaacatggttggtagtggggttttcatgtagcaaggcaaatgtcattcttaggaat 34967271  T
Q  171 aaaacattccaactcctttttcatgggaataaaaatggggagatcatgggttaaaaattttcctgggt 238  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34967270 aaaacatcccaactcctttttcatgggaataaaaatggggagatcatgggttaaaaattttcctgggt 34967203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 72 - 238
Target Start/End: Original strand, 27742651 - 27742817
Alignment:
Q  72 aatcaacacgttcagtgtattgagaaattaattggcagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcttaggaata 171  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27742651 aatcaacacgttcagtgtattgagaaattaattggtagttgaaaatacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcttaggaata 27742750  T
Q  172 aaacattccaactcctttttcatgggaataaaaatggggagatcatgggttaaaaattttcctgggt 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27742751 aaacattccaactcctttttcatgggaataaaaatggggagatcatgggttaaaaattttcatgggt 27742817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 94 - 238
Target Start/End: Complemental strand, 9117699 - 9117555
Alignment:
Q  94 agaaattaattggcagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcttaggaataaaacattccaactcctttttca 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9117699 agaaattaattggcagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcctaggaataaaacattccaactcctttttca 9117600  T
Q  194 tgggaataaaaatggggagatcatgggttaaaaattttcctgggt 238  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  9117599 tgggaataaaaatagggagatcatgggttaaaaattttcctgggt 9117555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 94 - 238
Target Start/End: Complemental strand, 54207492 - 54207348
Alignment:
Q  94 agaaattaattggcagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcttaggaataaaacattccaactcctttttca 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  54207492 agaaattaattggcagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcctaggaataaaacattccaactcctttttca 54207393  T
Q  194 tgggaataaaaatggggagatcatgggttaaaaattttcctgggt 238  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  54207392 tgggaataaaaatagggagatcatgggttaaaaattttcctgggt 54207348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 27742553 - 27742600
Alignment:
Q  18 ttttgcacaaaccaaaaagaacataaagaaataaaagatggattacat 65  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  27742553 ttttgcacaaaccaaaaagaacataaagaaataatagatggattacat 27742600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 9117802 - 9117755
Alignment:
Q  18 ttttgcacaaaccaaaaagaacataaagaaataaaagatggattacat 65  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||    
T  9117802 ttttgcacaaaccaaaaagaacataaagaaataatagatgaattacat 9117755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 34967468 - 34967421
Alignment:
Q  18 ttttgcacaaaccaaaaagaacataaagaaataaaagatggattacat 65  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||    
T  34967468 ttttgcacaaaccaaaaaaaacataaagaaataatagatggattacat 34967421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 54207595 - 54207548
Alignment:
Q  18 ttttgcacaaaccaaaaagaacataaagaaataaaagatggattacat 65  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||    
T  54207595 ttttgcacaaaccaaaaagaacataaagaaataatagatgaattacat 54207548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 141; Significance: 5e-74; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 94 - 238
Target Start/End: Complemental strand, 46920362 - 46920218
Alignment:
Q  94 agaaattaattggcagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcttaggaataaaacattccaactcctttttca 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46920362 agaaattaattggcagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcttaggaataaaacattccaactcctttttca 46920263  T
Q  194 tgggaataaaaatggggagatcatgggttaaaaattttcctgggt 238  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  46920262 tgggaataaaaatagggagatcatgggttaaaaattttcctgggt 46920218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 94 - 238
Target Start/End: Original strand, 11031561 - 11031705
Alignment:
Q  94 agaaattaattggcagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcttaggaataaaacattccaactcctttttca 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  11031561 agaaattaattggcagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcctaggaataaaacattccaactcctttttca 11031660  T
Q  194 tgggaataaaaatggggagatcatgggttaaaaattttcctgggt 238  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  11031661 tgggaataaaaatagggagatcatgggttaaaaattttcctgggt 11031705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 94 - 238
Target Start/End: Complemental strand, 18319860 - 18319716
Alignment:
Q  94 agaaattaattggcagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcttaggaataaaacattccaactcctttttca 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  18319860 agaaattaattggcagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcatttctaggaataaaacattccaactcctttttca 18319761  T
Q  194 tgggaataaaaatggggagatcatgggttaaaaattttcctgggt 238  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||    
T  18319760 tgggaataaaaatagggagatcatgggttaaaaaatttcctgggt 18319716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 72 - 238
Target Start/End: Original strand, 52126190 - 52126366
Alignment:
Q  72 aatcaacacgttcagtgtattgagaaattaattggcagttgaaaaaacatggtggtag---------tggggttttcatgtagcaaggcaaatgtcattc 162  Q
    |||||||||||||| || || || ||||||||||||||||||||||||||||||||||         ||||||||||| |||||||||||   |||||||    
T  52126190 aatcaacacgttcattgcatggaaaaattaattggcagttgaaaaaacatggtggtaggagacatagtggggttttcaagtagcaaggcactagtcattc 52126289  T
Q  163 ttaggaataaaa-cattccaactcctttttcatgggaataaaaatggggagatcatgggttaaaaattttcctgggt 238  Q
     ||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  52126290 ctaggaataaaaacattccaactcctctttcatgggaataaaaatgggaagatcatgggttaaaaattttcctgggt 52126366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 11031458 - 11031505
Alignment:
Q  18 ttttgcacaaaccaaaaagaacataaagaaataaaagatggattacat 65  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||    
T  11031458 ttttgcacaaaccaaaaagaacataaagaaataatagatgaattacat 11031505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 18319963 - 18319916
Alignment:
Q  18 ttttgcacaaaccaaaaagaacataaagaaataaaagatggattacat 65  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||    
T  18319963 ttttgcacaaaccaaaaagaacataaagaaataatagatgaattacat 18319916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 46920465 - 46920418
Alignment:
Q  18 ttttgcacaaaccaaaaagaacataaagaaataaaagatggattacat 65  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||    
T  46920465 ttttgcacaaaccaaaaagaacataaagaaataatagatgaattacat 46920418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 94 - 238
Target Start/End: Original strand, 16849879 - 16850023
Alignment:
Q  94 agaaattaattggcagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcttaggaataaaacattccaactcctttttca 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  16849879 agaaattaattggcagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcctaggaataaaacattccaactcctttttca 16849978  T
Q  194 tgggaataaaaatggggagatcatgggttaaaaattttcctgggt 238  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  16849979 tgggaataaaaatagggagatcatgggttaaaaattttcctgggt 16850023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 72 - 238
Target Start/End: Original strand, 31738741 - 31738917
Alignment:
Q  72 aatcaacacgttcagtgtattgagaaattaattggcagttgaaaaaacatggtggtag---------tggggttttcatgtagcaaggcaaatgtcattc 162  Q
    |||||||||||||| || || |||||||||||||||||||||||||||||||||||||         ||||||||||| ||||||||| ||  |||||||    
T  31738741 aatcaacacgttcattgcatggagaaattaattggcagttgaaaaaacatggtggtaggagacatagtggggttttcacgtagcaagggaatagtcattc 31738840  T
Q  163 ttaggaataaaac-attccaactcctttttcatgggaataaaaatggggagatcatgggttaaaaattttcctgggt 238  Q
     |||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31738841 ctaggaataaaaatattccaactcctctttcatgggaataaaaatggggagatcatgggttaaaaaatttcctgggt 31738917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 16849776 - 16849823
Alignment:
Q  18 ttttgcacaaaccaaaaagaacataaagaaataaaagatggattacat 65  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||    
T  16849776 ttttgcacaaaccaaaaagaacataaagaaataatagatgaattacat 16849823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 94 - 238
Target Start/End: Complemental strand, 38007255 - 38007111
Alignment:
Q  94 agaaattaattggcagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcttaggaataaaacattccaactcctttttca 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  38007255 agaaattaattggcagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcctaggaataaaacattccaactcctttttca 38007156  T
Q  194 tgggaataaaaatggggagatcatgggttaaaaattttcctgggt 238  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  38007155 tgggaataaaaatagggagatcatgggttaaaaattttcctgggt 38007111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 72 - 238
Target Start/End: Complemental strand, 51083647 - 51083471
Alignment:
Q  72 aatcaacacgttcagtgtattgagaaattaattggcagttgaaaaaacatggtggtag---------tggggttttcatgtagcaaggcaaatgtcattc 162  Q
    |||||||| | ||| || || |||||||||||||||||||||||||||||||||||||         ||||||||||| ||||||||||||  |||||||    
T  51083647 aatcaacatggtcattgcatggagaaattaattggcagttgaaaaaacatggtggtaggagacatagtggggttttcacgtagcaaggcaatagtcattc 51083548  T
Q  163 ttaggaataaaa-cattccaactcctttttcatgggaataaaaatggggagatcatgggttaaaaattttcctgggt 238  Q
     ||||||||||| ||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  51083547 ctaggaataaaaacattcaaactcctctttcatgggaataaaaatggagagatcatgggttaaaaattttcctgggt 51083471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 38007358 - 38007311
Alignment:
Q  18 ttttgcacaaaccaaaaagaacataaagaaataaaagatggattacat 65  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||    
T  38007358 ttttgcacaaaccaaaaagaacataaagaaataatagatgaattacat 38007311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 94 - 238
Target Start/End: Complemental strand, 11465838 - 11465694
Alignment:
Q  94 agaaattaattggcagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcttaggaataaaacattccaactcctttttca 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  11465838 agaaattaattggcagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcctaggaataaaacattccaactcctttttca 11465739  T
Q  194 tgggaataaaaatggggagatcatgggttaaaaattttcctgggt 238  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||    
T  11465738 tgggaataaaaatagggagatcatgggttaaaaattttcatgggt 11465694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 94 - 238
Target Start/End: Complemental strand, 3428735 - 3428591
Alignment:
Q  94 agaaattaattggcagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcttaggaataaaacattccaactcctttttca 193  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3428735 agaaattaattggtagttgaaaaaacatggtggtagtggggttttcatgtagcaaggcaaatgtcattcctaggaataaaacattccaactcctttttca 3428636  T
Q  194 tgggaataaaaatggggagatcatgggttaaaaattttcctgggt 238  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||    
T  3428635 tgggaataaaaatagggagatcataggttaaaaattttcctgggt 3428591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 3428838 - 3428791
Alignment:
Q  18 ttttgcacaaaccaaaaagaacataaagaaataaaagatggattacat 65  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||    
T  3428838 ttttgcacaaaccaaaaagaacataaagaaataatagatgaattacat 3428791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 11465941 - 11465894
Alignment:
Q  18 ttttgcacaaaccaaaaagaacataaagaaataaaagatggattacat 65  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||    
T  11465941 ttttgcacaaaccaaaaagaacataaagaaataatagatgaattacat 11465894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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