View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20785_low_3 (Length: 381)
Name: NF20785_low_3
Description: NF20785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20785_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 3 - 208
Target Start/End: Original strand, 32508860 - 32509066
Alignment:
| Q |
3 |
tgggtagat-aattctagtaggtaaaacaagtggggaaagtggaagacatctgcaggggatgatcacattgaagttcaattatggaagaattttacacac |
101 |
Q |
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| T |
32508860 |
tgggtagattaattctagtaggtagaacaagtggggaaagtggaagacatctgcaggggatgatcacattgaagttcaattatggaagaattttacacac |
32508959 |
T |
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| Q |
102 |
atataggtgctatgaaagtatggttctttttcatctgtctgtggtcctctaccccctgagatttcagtgcctaaaaatgtattttggccagctggaaatg |
201 |
Q |
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| T |
32508960 |
atataggtgctatgaaagtatggttctttttcatctgtctgtggtcctctaccccctgagatttcagtgcctaaaaatgtattttggccagctggaaatg |
32509059 |
T |
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| Q |
202 |
ctcttac |
208 |
Q |
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||||||| |
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| T |
32509060 |
ctcttac |
32509066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 245 - 363
Target Start/End: Original strand, 32509103 - 32509221
Alignment:
| Q |
245 |
actggcttctacggagatcgtagtaattgttttttgggttgtttgttggttcctctagttagttgataaataacattacttcaaaaggttgaattggtca |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32509103 |
actggcttctacggagatcgtagtaattgttttttgggttgtttgttggttcctctagttagttgataaataacattacttcaaaaggttgaattggtca |
32509202 |
T |
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| Q |
345 |
ttatacagaacacagttct |
363 |
Q |
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||||||||||||||||||| |
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| T |
32509203 |
ttatacagaacacagttct |
32509221 |
T |
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