View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20785_low_4 (Length: 371)
Name: NF20785_low_4
Description: NF20785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20785_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 11 - 142
Target Start/End: Complemental strand, 32685225 - 32685094
Alignment:
| Q |
11 |
cacagacgggccttcagattttacgaccacatggagtcatacctgagataacgctcagaaatcgaagtgttaacccctccagcttcatctttattgatgt |
110 |
Q |
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| T |
32685225 |
cacagacgggccttcagattttacaaccacatggagtcatacctgagataacgctcagaaatcgaagtgttaacccctccagcttcatctttattgatgt |
32685126 |
T |
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| Q |
111 |
aacgtttctcactactagcaaacaataaaatt |
142 |
Q |
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| T |
32685125 |
aatgtttctcactactagcaaacaataaaatt |
32685094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 201 - 355
Target Start/End: Complemental strand, 32685095 - 32684936
Alignment:
| Q |
201 |
tttactttgttatttgttttaaaacttaaaag-ataaataaattttttaggaaagtgattta----cttccgcataataattttagcaaaacatatagat |
295 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
32685095 |
tttactttgttatttgttttaaaacttaaaaggataaataaattttttaggagagtgatttaattacttccgcataataattttaggaaaacatatagat |
32684996 |
T |
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| Q |
296 |
ttacttatcaattaaacttcatttgtgtaggaaagtgatttaagtgatgaagatgaaaat |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32684995 |
ttacttatcaattaaacttcatttgtgtaggaaagtgatttaattgatgaagatgaaaat |
32684936 |
T |
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