View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20785_low_5 (Length: 344)
Name: NF20785_low_5
Description: NF20785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20785_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 5 - 338
Target Start/End: Complemental strand, 43673577 - 43673244
Alignment:
| Q |
5 |
acaactttttattggtatttctggtttgattttttgtccatgttgtgtgaggatataaaaagcctagaaggttaataaatgtgcaagcagaattaatgga |
104 |
Q |
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| T |
43673577 |
acaactttttattggtatttctggtttgattttttgtccatgttgtgtgaggatataaaaagcctagaaggttaagaaatgtgcaagcagaattaatgga |
43673478 |
T |
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| Q |
105 |
aaaaagaaatgttattttcaatgattataatatttgtgtatatgaatagaaagaacaatgaatttcagatcatggcgaacatttaaagactgctgaaaga |
204 |
Q |
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| T |
43673477 |
aaaaagaaatgttattttcaatgattataatatttgtgtatatgaatagaaagaacaatgaatttcagatcatggcgaacatttaaagactgctgaaaga |
43673378 |
T |
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| Q |
205 |
atgtgaattaagttccttcttctcaggatctcgtctttaatcttttcatgtcattttcgttttgtataatttctacttatatgtctataaaaatcttatc |
304 |
Q |
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| T |
43673377 |
atgtgaattaagttccttcttctcaggatctcgtctttaatcttttcatgtcattttcgttttgtataatttctacttatatgtctataaaaatcttatc |
43673278 |
T |
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| Q |
305 |
atttagcataaagtgttggattctatgatagttt |
338 |
Q |
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| T |
43673277 |
atttagcataaagtgttggattctatgatagttt |
43673244 |
T |
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