View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20786_high_1 (Length: 368)

Name: NF20786_high_1
Description: NF20786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20786_high_1
NF20786_high_1
[»] chr5 (31 HSPs)
chr5 (9-178)||(35064100-35064270)
chr5 (9-178)||(43025366-43025526)
chr5 (77-178)||(42815210-42815311)
chr5 (179-363)||(39434676-39434866)
chr5 (179-363)||(26283315-26283505)
chr5 (178-363)||(36293618-36293809)
chr5 (182-363)||(10033910-10034097)
chr5 (182-363)||(13817960-13818147)
chr5 (289-363)||(16155093-16155167)
chr5 (183-359)||(1776377-1776559)
chr5 (285-363)||(12278857-12278935)
chr5 (285-363)||(16333873-16333951)
chr5 (285-363)||(39657503-39657581)
chr5 (285-363)||(17332548-17332626)
chr5 (285-363)||(31680459-31680537)
chr5 (285-363)||(33430413-33430491)
chr5 (285-360)||(19986031-19986106)
chr5 (285-363)||(37254733-37254811)
chr5 (285-363)||(43068969-43069047)
chr5 (285-344)||(3155647-3155706)
chr5 (285-348)||(31501728-31501791)
chr5 (200-239)||(31680368-31680407)
chr5 (285-363)||(36291463-36291541)
chr5 (179-240)||(3155757-3155818)
chr5 (200-240)||(17332677-17332717)
chr5 (178-240)||(39657632-39657694)
chr5 (182-235)||(14316641-14316694)
chr5 (326-363)||(28801439-28801476)
chr5 (200-240)||(12278986-12279026)
chr5 (200-228)||(26543903-26543931)
chr5 (200-240)||(31501842-31501882)
[»] chr2 (24 HSPs)
chr2 (179-363)||(41251631-41251821)
chr2 (179-363)||(17445038-17445226)
chr2 (178-363)||(6403801-6403992)
chr2 (179-363)||(42439966-42440156)
chr2 (179-363)||(18981597-18981786)
chr2 (285-363)||(31581619-31581697)
chr2 (179-363)||(35962695-35962885)
chr2 (178-363)||(32127138-32127329)
chr2 (285-363)||(16405692-16405770)
chr2 (285-363)||(45418675-45418753)
chr2 (285-349)||(2285954-2286018)
chr2 (179-238)||(2958228-2958287)
chr2 (285-363)||(12756834-12756912)
chr2 (285-363)||(44084600-44084678)
chr2 (285-359)||(771091-771165)
chr2 (200-240)||(45418584-45418624)
chr2 (285-359)||(8147443-8147518)
chr2 (178-240)||(16405579-16405641)
chr2 (200-240)||(8147352-8147392)
chr2 (200-240)||(44084729-44084769)
chr2 (200-238)||(26237958-26237996)
chr2 (285-330)||(2958131-2958176)
chr2 (285-363)||(26162699-26162774)
chr2 (200-228)||(34523241-34523269)
[»] chr3 (25 HSPs)
chr3 (179-363)||(22968441-22968631)
chr3 (179-359)||(6269427-6269613)
chr3 (179-363)||(19390126-19390316)
chr3 (179-363)||(39771770-39771960)
chr3 (183-363)||(34084119-34084305)
chr3 (285-363)||(45183073-45183151)
chr3 (289-363)||(6930891-6930965)
chr3 (285-363)||(11018209-11018287)
chr3 (285-363)||(27935270-27935348)
chr3 (298-363)||(33041058-33041123)
chr3 (287-363)||(45335968-45336044)
chr3 (285-363)||(40081738-40081815)
chr3 (290-363)||(6503566-6503639)
chr3 (200-240)||(33040954-33040994)
chr3 (200-240)||(45182982-45183022)
chr3 (313-363)||(22922215-22922265)
chr3 (313-363)||(35514382-35514432)
chr3 (179-240)||(6503695-6503756)
chr3 (200-240)||(6931020-6931060)
chr3 (285-344)||(19565517-19565576)
chr3 (178-240)||(11018338-11018400)
chr3 (326-363)||(5135421-5135458)
chr3 (183-240)||(22922141-22922198)
chr3 (200-228)||(5354710-5354738)
chr3 (200-236)||(6890999-6891035)
[»] chr7 (19 HSPs)
chr7 (179-363)||(14777104-14777294)
chr7 (183-363)||(8394109-8394295)
chr7 (179-363)||(5555467-5555657)
chr7 (183-363)||(36630800-36630986)
chr7 (178-363)||(3114093-3114284)
chr7 (285-363)||(37002141-37002219)
chr7 (285-363)||(26624838-26624916)
chr7 (285-363)||(36658273-36658351)
chr7 (285-363)||(7002817-7002895)
chr7 (285-363)||(7048688-7048766)
chr7 (285-363)||(35090260-35090338)
chr7 (285-359)||(38638237-38638311)
chr7 (285-363)||(40920000-40920078)
chr7 (285-363)||(43184465-43184543)
chr7 (285-363)||(8867728-8867806)
chr7 (285-363)||(34389053-34389131)
chr7 (200-240)||(8867857-8867897)
chr7 (200-240)||(34389182-34389222)
chr7 (285-349)||(33685656-33685720)
[»] chr4 (41 HSPs)
chr4 (179-363)||(20129290-20129480)
chr4 (179-363)||(26439276-26439466)
chr4 (179-363)||(34407281-34407471)
chr4 (179-363)||(47500753-47500943)
chr4 (178-363)||(13012167-13012358)
chr4 (179-363)||(43355884-43356074)
chr4 (179-363)||(25930688-25930878)
chr4 (183-363)||(36382343-36382528)
chr4 (285-363)||(6235612-6235690)
chr4 (285-363)||(3292893-3292971)
chr4 (285-363)||(13392878-13392956)
chr4 (285-363)||(13396017-13396095)
chr4 (285-363)||(28877247-28877325)
chr4 (285-363)||(30216739-30216817)
chr4 (285-363)||(40529107-40529185)
chr4 (285-363)||(48989420-48989498)
chr4 (286-363)||(50205074-50205151)
chr4 (285-363)||(1817809-1817887)
chr4 (179-363)||(29319702-29319892)
chr4 (285-363)||(42333773-42333851)
chr4 (285-363)||(43143581-43143659)
chr4 (285-363)||(44156743-44156821)
chr4 (285-363)||(6690232-6690310)
chr4 (285-363)||(35546045-35546123)
chr4 (200-240)||(6690361-6690401)
chr4 (200-240)||(30216868-30216908)
chr4 (285-363)||(17511230-17511309)
chr4 (201-240)||(43143710-43143749)
chr4 (202-240)||(3293022-3293060)
chr4 (178-240)||(7769307-7769369)
chr4 (285-363)||(10352881-10352959)
chr4 (285-361)||(29995982-29996058)
chr4 (200-236)||(49908782-49908818)
chr4 (285-347)||(26448144-26448206)
chr4 (182-228)||(27363344-27363390)
chr4 (313-363)||(30077628-30077678)
chr4 (326-363)||(30110108-30110145)
chr4 (326-363)||(48130111-48130148)
chr4 (200-236)||(5517494-5517530)
chr4 (200-240)||(10353010-10353050)
chr4 (200-240)||(50205203-50205243)
[»] scaffold0069 (1 HSPs)
scaffold0069 (178-363)||(17821-18012)
[»] scaffold0002 (1 HSPs)
scaffold0002 (179-363)||(480454-480644)
[»] chr6 (11 HSPs)
chr6 (179-363)||(398597-398787)
chr6 (285-363)||(13837913-13837991)
chr6 (285-363)||(18339198-18339276)
chr6 (285-363)||(28996822-28996900)
chr6 (179-363)||(34948755-34948945)
chr6 (285-363)||(29743375-29743453)
chr6 (285-363)||(33229333-33229411)
chr6 (179-240)||(13837801-13837862)
chr6 (200-240)||(18339107-18339147)
chr6 (200-240)||(28996731-28996771)
chr6 (200-235)||(13647018-13647053)
[»] chr1 (15 HSPs)
chr1 (179-363)||(26144235-26144425)
chr1 (179-363)||(7433425-7433615)
chr1 (285-363)||(32982053-32982131)
chr1 (285-363)||(3829076-3829153)
chr1 (285-359)||(17445405-17445479)
chr1 (285-363)||(42310938-42311016)
chr1 (285-363)||(321374-321452)
chr1 (285-363)||(35907644-35907722)
chr1 (179-237)||(23313218-23313276)
chr1 (186-240)||(32982182-32982236)
chr1 (182-240)||(42311067-42311125)
chr1 (176-240)||(41972401-41972464)
chr1 (326-363)||(33489839-33489876)
chr1 (326-363)||(41972253-41972290)
chr1 (200-240)||(35907553-35907593)
[»] scaffold2142 (1 HSPs)
scaffold2142 (178-363)||(501-692)
[»] chr8 (18 HSPs)
chr8 (179-363)||(39914495-39914684)
chr8 (183-349)||(15838270-15838441)
chr8 (172-363)||(29728383-29728580)
chr8 (285-363)||(16788022-16788100)
chr8 (285-361)||(3648793-3648869)
chr8 (285-363)||(4404100-4404178)
chr8 (285-363)||(9877312-9877390)
chr8 (285-363)||(23402200-23402278)
chr8 (285-363)||(34136822-34136900)
chr8 (285-361)||(42231029-42231105)
chr8 (178-240)||(34136951-34137013)
chr8 (203-240)||(16788151-16788188)
chr8 (200-240)||(4404009-4404049)
chr8 (200-240)||(36408552-36408592)
chr8 (200-239)||(2729323-2729362)
chr8 (200-235)||(23402109-23402144)
chr8 (182-239)||(3648921-3648978)
chr8 (326-363)||(40470472-40470509)
[»] scaffold0502 (2 HSPs)
scaffold0502 (285-363)||(5322-5400)
scaffold0502 (200-240)||(5231-5271)
[»] scaffold0041 (1 HSPs)
scaffold0041 (285-363)||(53017-53095)
[»] scaffold0154 (2 HSPs)
scaffold0154 (285-363)||(31572-31650)
scaffold0154 (200-240)||(31481-31521)
[»] scaffold0769 (1 HSPs)
scaffold0769 (200-228)||(1278-1306)
[»] scaffold0012 (1 HSPs)
scaffold0012 (200-228)||(194029-194057)


Alignment Details
Target: chr5 (Bit Score: 139; Significance: 1e-72; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 9 - 178
Target Start/End: Original strand, 35064100 - 35064270
Alignment:
Q  9 caagaatatcaataaatcctagtataca-ccgtaaggatgaaaacagttaaattaaaaacgatcgagattaagaaccgaccttcattggtctgagcgttg 107  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  35064100 caagaaaatcaataaatcctagtatacaaccgtaaggatgaaaacagttaaattaaaaacgatcgagattaagaaccgaccttcattggtctgagcgtta 35064199  T
Q  108 gtgaccagaaggtcaaaatcggtaccccttcccaaatgcttggatacaaatatactttgtttcaatgtacc 178  Q
    || ||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  35064200 gtaaccagaaggtcaaaatcagtaccccttccaaaacgcttggatacaaatatactttgtttcaatgtacc 35064270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 9 - 178
Target Start/End: Original strand, 43025366 - 43025526
Alignment:
Q  9 caagaatatcaataaatcctagtatacaccgtaaggatgaaaacagttaaattaaaaacgatcgagattaagaaccgaccttcattggtctgagcgttgg 108  Q
    |||||| ||||||||||||||||    || |||| |||||||||||     |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  43025366 caagaaaatcaataaatcctagt----acagtaacgatgaaaacag-----ttaaaaacgatcaagattaagaaccgaccttcattggtctgagcgttgg 43025456  T
Q  109 tgaccagaaggtcaaaatcggtaccccttcccaaatgcttggatacaaatatactttgtttcaatgtacc 178  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43025457 tgaccagaaggtcaaaatcagtaccccttcccaaatgcttggatacaaatatactttgtttcaatgtacc 43025526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 77 - 178
Target Start/End: Original strand, 42815210 - 42815311
Alignment:
Q  77 taagaaccgaccttcattggtctgagcgttggtgaccagaaggtcaaaatcggtaccccttcccaaatgcttggatacaaatatactttgtttcaatgta 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  42815210 taagaaccgaccttcattggtctgagcgttggtgaccagaaggtcaaaatcagtaccccttcctaaatgcttggatacaaatatactttgtttcaatgta 42815309  T
Q  177 cc 178  Q
    ||    
T  42815310 cc 42815311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 179 - 363
Target Start/End: Original strand, 39434676 - 39434866
Alignment:
Q  179 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataattttt--------gactcaacccaaaagtcctattaacacattc 270  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||        ||||||||||||||| || |||||||||||     
T  39434676 catgggcggttctaccgtgtggcgaccctgggcggtcgcccgggctcgatcgataattttttcacattagactcaacccaaaagccc-attaacacattt 39434774  T
Q  271 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    ||            |||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39434775 acaaaatgaaaaa-tttgggcaatctgaaaattgtcacatgtaaataggtctttgaattttatttagcacactattgacagtttcatctctct 39434866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 179 - 363
Target Start/End: Complemental strand, 26283505 - 26283315
Alignment:
Q  179 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 270  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||        |||||||| |||||| | |||||||||||     
T  26283505 catgggcggttccaccgtgtagcgacctcgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagttc-attaacacattt 26283407  T
Q  271 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |             |||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26283406 a-taaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctctct 26283315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 178 - 363
Target Start/End: Complemental strand, 36293809 - 36293618
Alignment:
Q  178 ccatgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacatt 269  Q
    ||||||||||||||||||||| ||||||||| ||||||| |||| |||||| |||||||||||        |||||||||||||| || |||||||||||    
T  36293809 ccatgggcggttctaccgtgtggcgaccccgagcggtcgtccggactcgatcgataatttttgtacattagactcaacccaaaagccc-attaacacatt 36293711  T
Q  270 cacnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
     ||            |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36293710 tacaaaaagaaaaa-tttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactatttacagtttcatctctct 36293618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 182 - 363
Target Start/End: Original strand, 10033910 - 10034097
Alignment:
Q  182 gggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattcacn 273  Q
    ||||||||||||||| | |||||||||| || ||||||||||||||| |||||||||||        |||||||||||||| || ||||||||||| ||     
T  10033910 gggcggttctaccgtatggcgaccccggacgatcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccc-attaacacatttaca 10034008  T
Q  274 nnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
               |||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||| | ||||| |||||    
T  10034009 aaaagaaaaa-tttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatgtctct 10034097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 182 - 363
Target Start/End: Original strand, 13817960 - 13818147
Alignment:
Q  182 gggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattcacn 273  Q
    ||||||||||||||| | |||||||||||||||||| |||||||||| |||||||||||        |||||||||||||| || ||||||||||| ||     
T  13817960 gggcggttctaccgtatggcgaccccgggcggtcgctcgggctcgatcgataatttttgcacattagactcaacccaaaagccc-attaacacatttaca 13818058  T
Q  274 nnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
               |||||||||||| |||||||||||| | ||||||||||||||| ||||||||||||||||||||| |  ||||||||||    
T  13818059 aaaagaaaaa-tttgggcaatctgaaaattgtcacacgcaaataggtcttggaaatttatttagcacactattgacgggctcatctctct 13818147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 289 - 363
Target Start/End: Original strand, 16155093 - 16155167
Alignment:
Q  289 ggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16155093 ggcaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacagattcatctctct 16155167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 183 - 359
Target Start/End: Complemental strand, 1776559 - 1776377
Alignment:
Q  183 ggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattcacnn 274  Q
    |||||||||||||| |  |||||||||||||||||||||||||||| |||||||||||        | |||||| |||||||| ||||||||||| ||      
T  1776559 ggcggttctaccgtatgacgaccccgggcggtcgcccgggctcgatcgataatttttgtacattaaagtcaaccaaaaagtcc-attaacacatttacaa 1776461  T
Q  275 nnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatct 359  Q
              |||||||||| | |||||||||||| | ||||||||||||||||||||||||||||||||| ||||| |||||||    
T  1776460 aaagaaaaa-tttgggcaatttgaaaattgtcacacgcaaataggtcttggaattttatttagcacactatcgacaggttcatct 1776377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 285 - 363
Target Start/End: Complemental strand, 12278935 - 12278857
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||| |||||| ||||| | |||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  12278935 tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacaggttcatctctct 12278857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 285 - 363
Target Start/End: Complemental strand, 16333951 - 16333873
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||| | ||||| |||||    
T  16333951 tttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacggattcatgtctct 16333873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 285 - 363
Target Start/End: Complemental strand, 39657581 - 39657503
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||| | ||||| |||||    
T  39657581 tttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatgtctct 39657503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 285 - 363
Target Start/End: Complemental strand, 17332626 - 17332548
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||| |||||| ||||| | |||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  17332626 tttgggcaatctgaaaattttcacacgcaaataggtctcggaattttatttagcacactattgacggattcatctctct 17332548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 285 - 363
Target Start/End: Original strand, 31680459 - 31680537
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||| |||||| ||||| | |||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  31680459 tttgggcaatctgaaaattctcacatgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 31680537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 285 - 363
Target Start/End: Original strand, 33430413 - 33430491
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||| |||||| ||||| | |||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  33430413 tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 33430491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 285 - 360
Target Start/End: Original strand, 19986031 - 19986106
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctc 360  Q
    |||||| |||||||||||| ||||| | |||||||||||| ||||||||||| |||||||||||||| ||||||||    
T  19986031 tttgggtaatctaaaaattatcacacgcaaataggtcttgaaattttatttaacacactattgacaggttcatctc 19986106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 285 - 363
Target Start/End: Original strand, 37254733 - 37254811
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||| |||||| ||||| | |||||||||| |||||||||||||||||| ||||||| | |||||||||||    
T  37254733 tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacattattgacgggttcatctctct 37254811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 285 - 363
Target Start/End: Original strand, 43068969 - 43069047
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||| |||||| | ||| ||||||| |||| |||||||||||||||||||||||| | | |||||||||||    
T  43068969 tttgggcaatctgaaaattcttacatgtaaataagtctcggaattttatttagcacactattgccggattcatctctct 43069047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 285 - 344
Target Start/End: Complemental strand, 3155706 - 3155647
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacacta 344  Q
    ||||| |||||| |||||||||||| | |||||| |||||||||||||||||||||||||    
T  3155706 tttggacaatctgaaaattgtcacacgcaaatagatcttggaattttatttagcacacta 3155647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 285 - 348
Target Start/End: Complemental strand, 31501791 - 31501728
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattga 348  Q
    |||||||||||| |||||| || || | |||||||||| | |||||||||||||||||||||||    
T  31501791 tttgggcaatctgaaaattctcgcacgcaaataggtctcgaaattttatttagcacactattga 31501728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 239
Target Start/End: Original strand, 31680368 - 31680407
Alignment:
Q  200 gcgaccccgggcggtcgcccgggctcgattgataattttt 239  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  31680368 gcgaccccgggcggtcgcccgggctcgatcgataattttt 31680407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 363
Target Start/End: Original strand, 36291463 - 36291541
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||| |||||| | |||   ||||||||||  |||||||||||| |||||||||||| | |||||||||||    
T  36291463 tttgggcaatctcaaaattattacacacaaataggtctcagaattttatttaacacactattgacgggttcatctctct 36291541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 3155818 - 3155757
Alignment:
Q  179 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg 240  Q
    |||||||||||||| ||| | |||| ||||||||||||| ||||||||||  ||||||||||    
T  3155818 catgggcggttctatcgtatggcgatcccgggcggtcgctcgggctcgatcaataatttttg 3155757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 17332717 - 17332677
Alignment:
Q  200 gcgaccccgggcggtcgcccgggctcgattgataatttttg 240  Q
    ||||||||||||| ||||||||||||||| |||||||||||    
T  17332717 gcgaccccgggcgttcgcccgggctcgatcgataatttttg 17332677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 39657694 - 39657632
Alignment:
Q  178 ccatgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg 240  Q
    ||||||||||||||||  | | |||||||| | ||||||  ||||||||||||||||||||||    
T  39657694 ccatgggcggttctactatatggcgaccccagacggtcgttcgggctcgattgataatttttg 39657632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 14316641 - 14316694
Alignment:
Q  182 gggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataat 235  Q
    ||||||||||||||| | |||| | ||||||||||||| |||||||| ||||||    
T  14316641 gggcggttctaccgtatggcgatctcgggcggtcgcccaggctcgatcgataat 14316694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 28801439 - 28801476
Alignment:
Q  326 aattttatttagcacactattgacagtttcatctctct 363  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  28801439 aattttatttagctcactattgacaggttcatctctct 28801476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 12279026 - 12278986
Alignment:
Q  200 gcgaccccgggcggtcgcccgggctcgattgataatttttg 240  Q
    |||| ||||||||||||||||| |||||| |||||||||||    
T  12279026 gcgatcccgggcggtcgcccggactcgatcgataatttttg 12278986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 228
Target Start/End: Complemental strand, 26543931 - 26543903
Alignment:
Q  200 gcgaccccgggcggtcgcccgggctcgat 228  Q
    |||||||||||||||||||||||||||||    
T  26543931 gcgaccccgggcggtcgcccgggctcgat 26543903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 31501882 - 31501842
Alignment:
Q  200 gcgaccccgggcggtcgcccgggctcgattgataatttttg 240  Q
    ||||||||||||| | ||||||||||||| |||||||||||    
T  31501882 gcgaccccgggcgattgcccgggctcgatcgataatttttg 31501842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 5e-44; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 179 - 363
Target Start/End: Complemental strand, 41251821 - 41251631
Alignment:
Q  179 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 270  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||        |||||||||||||| || |||||||||||     
T  41251821 catgggcggttctaccgtgtagtgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccc-attaacacattt 41251723  T
Q  271 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    ||            |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41251722 acaaaaagaaaaa-tttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 41251631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 179 - 363
Target Start/End: Complemental strand, 17445226 - 17445038
Alignment:
Q  179 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg------actcaacccaaaagtcctattaacacattcac 272  Q
    |||||||||||||||||||| |||||| |||||||||||||| ||||||| |||||||||||      |||||||||||||| || ||||||||||| ||    
T  17445226 catgggcggttctaccgtgtggcgacctcgggcggtcgcccgagctcgatcgataatttttgcactagactcaacccaaaagccc-attaacacatttac 17445128  T
Q  273 nnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
                |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17445127 aaaaagaaaaa-tttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 17445038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 178 - 363
Target Start/End: Complemental strand, 6403992 - 6403801
Alignment:
Q  178 ccatgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacatt 269  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||        |||||||| |||||| | |||||||||||    
T  6403992 ccatgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagttc-attaacacatt 6403894  T
Q  270 cacnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
     |             |||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6403893 ta-taaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctctct 6403801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 179 - 363
Target Start/End: Original strand, 42439966 - 42440156
Alignment:
Q  179 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 270  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||        ||| |||||||||| || |||||||||||     
T  42439966 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactaaacccaaaagccc-attaacacattt 42440064  T
Q  271 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    ||            |||||||||||| |||||||||||| | |||||||||||| |||||||||||||||||||||||| | ||||| |||||    
T  42440065 acaaaaagaaaaa-tttgggcaatctgaaaattgtcacacgcaaataggtcttgcaattttatttagcacactattgacggattcatgtctct 42440156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 179 - 363
Target Start/End: Original strand, 18981597 - 18981786
Alignment:
Q  179 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 270  Q
    |||||||||||||||||| | ||||||| ||||||||| |||||||||||||||||||||||        ||||||||||||||||| ||||| |||||     
T  18981597 catgggcggttctaccgtatggcgaccc-gggcggtcgtccgggctcgattgataatttttgcacattagactcaacccaaaagtcc-attaaaacattt 18981694  T
Q  271 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    ||            |||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||| ||||| | ||||| |||||    
T  18981695 acaaaaagaaaaa-tttgggcaatttaaaaattgtcacacgcaaataggtcttggaattttatttagcacactgttgacgggttcatgtctct 18981786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 285 - 363
Target Start/End: Complemental strand, 31581697 - 31581619
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  31581697 tttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctctct 31581619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 179 - 363
Target Start/End: Original strand, 35962695 - 35962885
Alignment:
Q  179 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 270  Q
    |||||||||||||||||| | |||||||| |||||||| ||||||||||| |||||||||||        |||||||||||||| | ||||||||||||     
T  35962695 catgggcggttctaccgtatggcgaccccaggcggtcgtccgggctcgatcgataatttttgcacattagactcaacccaaaag-cttattaacacattt 35962793  T
Q  271 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    ||            |||||||||||| ||||||||||||   ||||||||||||||||||||||||||||||||||||| | ||||| |||||    
T  35962794 acaaaaagaaaat-tttgggcaatctgaaaattgtcacacacaaataggtcttggaattttatttagcacactattgacgggttcatgtctct 35962885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 363
Target Start/End: Complemental strand, 32127329 - 32127138
Alignment:
Q  178 ccatgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacatt 269  Q
    ||||||||||||||| ||| | |||||||||||||||||||||||||||||  ||||||||||        |||| |||||||||  | |||||||||||    
T  32127329 ccatgggcggttctagcgtatggcgaccccgggcggtcgcccgggctcgatcaataatttttgcacattaaactcgacccaaaagctc-attaacacatt 32127231  T
Q  270 cacnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
     ||            ||| |||||||| |||||||||||| | |||||| |||||||||||||||||||||||||||||| | ||||| |||||    
T  32127230 tacaaaaagaaaaa-tttaggcaatctgaaaattgtcacacgcaaatagatcttggaattttatttagcacactattgacgggttcatgtctct 32127138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 285 - 363
Target Start/End: Original strand, 16405692 - 16405770
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    ||||| |||||| |||||||||||| | ||||| ||||||||||||||||||||||||||||||| | ||||| |||||    
T  16405692 tttggacaatctgaaaattgtcacacgcaaataagtcttggaattttatttagcacactattgacgggttcatgtctct 16405770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 285 - 363
Target Start/End: Original strand, 45418675 - 45418753
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||| |||||| ||||| | ||||||||||  ||||||||||||||||||||||||| | |||||||||||    
T  45418675 tttgggcaatctgaaaattctcacacgcaaataggtctctgaattttatttagcacactattgacgggttcatctctct 45418753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 285 - 349
Target Start/End: Original strand, 2285954 - 2286018
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgac 349  Q
    |||| ||||||| |||||||||||| | |||||||| ||||||||||||||||||||||||||||    
T  2285954 tttgagcaatctgaaaattgtcacacgcaaataggttttggaattttatttagcacactattgac 2286018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 2958287 - 2958228
Alignment:
Q  179 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttt 238  Q
    |||||||||||||||||| | ||||||||||||||||| ||||||||||| |||||||||    
T  2958287 catgggcggttctaccgtatggcgaccccgggcggtcgtccgggctcgatcgataatttt 2958228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 285 - 363
Target Start/End: Complemental strand, 12756912 - 12756834
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||| ||||||| |||||| ||||| | ||||| |||| |||||||||||||||||||||||||| | |||||||||||    
T  12756912 tttgagcaatctgaaaattctcacacgcaaataagtctcggaattttatttagcacactattgacgggttcatctctct 12756834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 285 - 363
Target Start/End: Complemental strand, 44084678 - 44084600
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||| |||||| ||| | | ||||||||||  ||||||||||||||||||||||||| | |||||||||||    
T  44084678 tttgggcaatctgaaaattctcatacgcaaataggtctcagaattttatttagcacactattgacgggttcatctctct 44084600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 285 - 359
Target Start/End: Original strand, 771091 - 771165
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatct 359  Q
    |||||||||||| |||||| ||||| | |||||||||| |||| ||||||||||||| ||||||| | |||||||    
T  771091 tttgggcaatctgaaaattctcacacgcaaataggtctcggaactttatttagcacattattgacgggttcatct 771165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 45418584 - 45418624
Alignment:
Q  200 gcgaccccgggcggtcgcccgggctcgattgataatttttg 240  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  45418584 gcgaccccgggcggtcgcccgggctcgatcgataatttttg 45418624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 285 - 359
Target Start/End: Original strand, 8147443 - 8147518
Alignment:
Q  285 tttgggcaatct-aaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatct 359  Q
    |||||||||||| ||||||| ||||| | |||||| ||| ||||||||||||| |||||||||||| | |||||||    
T  8147443 tttgggcaatctgaaaaattctcacacgcaaatagatctcggaattttatttaacacactattgacgggttcatct 8147518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 16405579 - 16405641
Alignment:
Q  178 ccatgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg 240  Q
    ||||||||||||||||| | | | ||||| |||||||||||||||||| || |||||||||||    
T  16405579 ccatgggcggttctaccatatggtgaccctgggcggtcgcccgggctcaatcgataatttttg 16405641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 8147352 - 8147392
Alignment:
Q  200 gcgaccccgggcggtcgcccgggctcgattgataatttttg 240  Q
    ||||||||||||||||||||||||||||| |||||| ||||    
T  8147352 gcgaccccgggcggtcgcccgggctcgatcgataatctttg 8147392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 44084769 - 44084729
Alignment:
Q  200 gcgaccccgggcggtcgcccgggctcgattgataatttttg 240  Q
    |||||||||||| |||||||||||||||| |||||||||||    
T  44084769 gcgaccccgggcagtcgcccgggctcgatcgataatttttg 44084729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 26237958 - 26237996
Alignment:
Q  200 gcgaccccgggcggtcgcccgggctcgattgataatttt 238  Q
    ||||||||||||||||||||||||||||| |||| ||||    
T  26237958 gcgaccccgggcggtcgcccgggctcgatcgatattttt 26237996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 330
Target Start/End: Complemental strand, 2958176 - 2958131
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattt 330  Q
    |||||| ||||| |||||||||||| | ||||||||||||||||||    
T  2958176 tttgggtaatctgaaaattgtcacacgcaaataggtcttggaattt 2958131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 363
Target Start/End: Complemental strand, 26162774 - 26162699
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    ||||||||||||||||||| ||| |   |||||||||| |||   |||||||||||| ||||||| | |||||||||||    
T  26162774 tttgggcaatctaaaaattctcaaacacaaataggtctcgga---ttatttagcacattattgacgggttcatctctct 26162699  T

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Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 228
Target Start/End: Original strand, 34523241 - 34523269
Alignment:
Q  200 gcgaccccgggcggtcgcccgggctcgat 228  Q
    |||||||||||||||||||||||||||||    
T  34523241 gcgaccccgggcggtcgcccgggctcgat 34523269  T

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Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 179 - 363
Target Start/End: Complemental strand, 22968631 - 22968441
Alignment:
Q  179 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 270  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||        ||| |||||||||| || |||||||||||     
T  22968631 catgggcggttctaccgtgtagcgaccccgggcggtcgtccgggctcgatcgataatttttgcacattagacttaacccaaaagccc-attaacacattt 22968533  T
Q  271 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    ||            ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  22968532 acaaaaagaaaaa-tttgggcaatctaaaaattgtcacacgtaaataggtcttgaaattttatttagcacactattgacagtttcatctctct 22968441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 179 - 359
Target Start/End: Complemental strand, 6269613 - 6269427
Alignment:
Q  179 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 270  Q
    ||||||||||||||||||||||||| |||||||||||| |||| |||||| |||||||||||        |||||||||||||| || |||||||||||     
T  6269613 catgggcggttctaccgtgtagcgatcccgggcggtcgtccggactcgatcgataatttttgcacattagactcaacccaaaagccc-attaacacattt 6269515  T
Q  271 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatct 359  Q
    ||            |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6269514 acaaaaagaaaaa-tttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacagtttcatct 6269427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 179 - 363
Target Start/End: Original strand, 19390126 - 19390316
Alignment:
Q  179 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 270  Q
    |||||| ||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||        |||||||| ||||||| ||||||||||||     
T  19390126 catgggaggttctaccgtgtggcgaccccgggcggtcgtccgggttcgatcgataatttttgcacattagactcaacctaaaagtc-tattaacacattt 19390224  T
Q  271 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    ||            |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19390225 acaaaaagaaaaa-tttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 19390316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 179 - 363
Target Start/End: Original strand, 39771770 - 39771960
Alignment:
Q  179 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 270  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||        |||||||||||||| || |||||||||||     
T  39771770 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagccc-attaacacattt 39771868  T
Q  271 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |             |||||||||||| |||||||||||| |||||||||||||| ||||||||||  ||||||||||||||||||||||||||    
T  39771869 a-taaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgacagtttcatctctct 39771960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 183 - 363
Target Start/End: Complemental strand, 34084305 - 34084119
Alignment:
Q  183 ggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattcacnn 274  Q
    |||||||||||||| | |||||||||||||||||||||| |||||| |||||||||||        | |||||| |||||||| ||||||||||| ||      
T  34084305 ggcggttctaccgtatggcgaccccgggcggtcgcccggactcgatcgataatttttgcacattaaattcaaccaaaaagtcc-attaacacatttacaa 34084207  T
Q  275 nnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
              |||||||||| | |||||| ||||| | ||||||||||||||||||||||||||||||||||||  | |||||||||||    
T  34084206 aaagaaaaa-tttgggcaatatgaaaattatcacacgcaaataggtcttggaattttatttagcacactattgatgggttcatctctct 34084119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 285 - 363
Target Start/End: Original strand, 45183073 - 45183151
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||| |||||| |||||   |||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  45183073 tttgggcaatctgaaaattctcacacacaaataggtctcggaattttatttagcacactattgacgggttcatctctct 45183151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 289 - 363
Target Start/End: Complemental strand, 6930965 - 6930891
Alignment:
Q  289 ggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||| |||||| ||||| | |||||||||| ||||||||||||||||||||||||||   |||||||||||    
T  6930965 ggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgagttcatctctct 6930891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 285 - 363
Target Start/End: Complemental strand, 11018287 - 11018209
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||| |||||| ||||| | ||||||||||  |||||||||||||||||| |||||| | |||||||||||    
T  11018287 tttgggcaatctgaaaattctcacacgcaaataggtctcagaattttatttagcacacaattgacgggttcatctctct 11018209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 285 - 363
Target Start/End: Original strand, 27935270 - 27935348
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||| |||||| ||| | | |||||||||| |||||||||||||||| ||||||||| | |||||||||||    
T  27935270 tttgggcaatctgaaaattctcatacgaaaataggtctcggaattttatttagcatactattgacgggttcatctctct 27935348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 298 - 363
Target Start/End: Original strand, 33041058 - 33041123
Alignment:
Q  298 aaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||| ||||| | |||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  33041058 aaaattttcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 33041123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 287 - 363
Target Start/End: Original strand, 45335968 - 45336044
Alignment:
Q  287 tgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||| |||||| | ||| | |||||||||||||||||||||||||||||||| || | | |||||||||||    
T  45335968 tgggcaatctgaaaattcttacacgcaaataggtcttggaattttatttagcacactagtgccggattcatctctct 45336044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 285 - 363
Target Start/End: Complemental strand, 40081815 - 40081738
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||| | |||||||||||| | |||||| ||||||| |||| ||||||||||||||||| | |||||||||||    
T  40081815 tttgggcaatttgaaaattgtcacacgcaaatagatcttggattttt-tttagcacactattgacgggttcatctctct 40081738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 290 - 363
Target Start/End: Complemental strand, 6503639 - 6503566
Alignment:
Q  290 gcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    ||||||| |||||| ||||||| |||||||||| ||| ||||||||||||||| |||||  | |||||||||||    
T  6503639 gcaatctgaaaattctcacaggcaaataggtctcggatttttatttagcacacaattgatgggttcatctctct 6503566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 33040954 - 33040994
Alignment:
Q  200 gcgaccccgggcggtcgcccgggctcgattgataatttttg 240  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  33040954 gcgaccccgggcggtcgctcgggctcgattgataatttttg 33040994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 45182982 - 45183022
Alignment:
Q  200 gcgaccccgggcggtcgcccgggctcgattgataatttttg 240  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  45182982 gcgaccccgggcggtcgcccgggctcgatcgataatttttg 45183022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 363
Target Start/End: Original strand, 22922215 - 22922265
Alignment:
Q  313 aaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||| ||||||||||||||||| |||||||||||| | |||||||||||    
T  22922215 aaatagatcttggaattttatttaacacactattgacgggttcatctctct 22922265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 363
Target Start/End: Original strand, 35514382 - 35514432
Alignment:
Q  313 aaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||| |||||||||||| ||||||||||||| | |||||||||||    
T  35514382 aaataggtctaggaattttattttgcacactattgacgggttcatctctct 35514432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 6503756 - 6503695
Alignment:
Q  179 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg 240  Q
    |||||||||||  |||||   ||||||||||||||||||||||||||||| ||| |||||||    
T  6503756 catgggcggtttcaccgtccggcgaccccgggcggtcgcccgggctcgatcgattatttttg 6503695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 6931060 - 6931020
Alignment:
Q  200 gcgaccccgggcggtcgcccgggctcgattgataatttttg 240  Q
    |||||||||| |||||||||||||||||| |||||||||||    
T  6931060 gcgaccccggacggtcgcccgggctcgatcgataatttttg 6931020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 344
Target Start/End: Complemental strand, 19565576 - 19565517
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacacta 344  Q
    ||||| |||||| |||||| | ||| | |||||||||| |||||||||||||||||||||    
T  19565576 tttggacaatctgaaaattcttacacgcaaataggtctcggaattttatttagcacacta 19565517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 11018400 - 11018338
Alignment:
Q  178 ccatgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg 240  Q
    ||||||||||||  |||||   ||||| |||||||||||||| |||||||| |||||||||||    
T  11018400 ccatgggcggtttcaccgtccggcgactccgggcggtcgcccaggctcgatcgataatttttg 11018338  T

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Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 5135421 - 5135458
Alignment:
Q  326 aattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||||||||||||||| | |||||||||||    
T  5135421 aattttatttagcacactattgacgggttcatctctct 5135458  T

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Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 22922141 - 22922198
Alignment:
Q  183 ggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg 240  Q
    |||||||| ||||| | |||| ||||||||||||| |||||||||| ||| |||||||    
T  22922141 ggcggttccaccgtatggcgatcccgggcggtcgctcgggctcgatcgatcatttttg 22922198  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 228
Target Start/End: Original strand, 5354710 - 5354738
Alignment:
Q  200 gcgaccccgggcggtcgcccgggctcgat 228  Q
    |||||||||||||||||||||||||||||    
T  5354710 gcgaccccgggcggtcgcccgggctcgat 5354738  T

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Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 236
Target Start/End: Original strand, 6890999 - 6891035
Alignment:
Q  200 gcgaccccgggcggtcgcccgggctcgattgataatt 236  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  6890999 gcgacaccgggcggtcgcccgggctcgatcgataatt 6891035  T

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Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 179 - 363
Target Start/End: Complemental strand, 14777294 - 14777104
Alignment:
Q  179 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 270  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||        ||||||||||||||  | |||||||||||     
T  14777294 catgggcggttctaccgtgtagcgatcccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagctc-attaacacattt 14777196  T
Q  271 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    ||            |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14777195 acaaaaagaaaaa-tttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacagtttcatcgctct 14777104  T

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Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 183 - 363
Target Start/End: Original strand, 8394109 - 8394295
Alignment:
Q  183 ggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattcacnn 274  Q
    |||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||        |||||||| |||||||| ||||||||||| ||      
T  8394109 ggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattaaactcaaccaaaaagtcc-attaacacatttacaa 8394207  T
Q  275 nnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
              |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| | || ||||||||    
T  8394208 aaggaaaaa-tttgggcaatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacgggtttatctctct 8394295  T

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Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 179 - 363
Target Start/End: Original strand, 5555467 - 5555657
Alignment:
Q  179 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 270  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||        |||||||||||||| || |||||| ||||     
T  5555467 catgggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccc-attaacgcattt 5555565  T
Q  271 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    ||            |||||||||||| ||||||||||||   ||||||||||||||||||||||||||||||||||||| | ||||| |||||    
T  5555566 acaaaaagaaaaa-tttgggcaatctgaaaattgtcacacacaaataggtcttggaattttatttagcacactattgacgggttcatgtctct 5555657  T

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Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 183 - 363
Target Start/End: Original strand, 36630800 - 36630986
Alignment:
Q  183 ggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattcacnn 274  Q
    |||||||||||||| | |||||||||| |||||||||||||||||| |||||||||||        |||||||| |||||||| ||||||||||| ||      
T  36630800 ggcggttctaccgtatggcgaccccggacggtcgcccgggctcgatcgataatttttgcacattaaactcaaccaaaaagtcc-attaacacatttacaa 36630898  T
Q  275 nnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
              |||||||||||| |||||||||||| | |||||||||||||||||||| |||||||||||||||| | |||||||||||    
T  36630899 aaagaaaaa-tttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttagttagcacactattgacgggttcatctctct 36630986  T

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Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 178 - 363
Target Start/End: Complemental strand, 3114284 - 3114093
Alignment:
Q  178 ccatgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacatt 269  Q
    ||||||||||||||||||| | | |||||||| |||||||||||||||||| |||||||||||        |||||||||||||| || |||||||||||    
T  3114284 ccatgggcggttctaccgtatggtgaccccggacggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccc-attaacacatt 3114186  T
Q  270 cacnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
     ||            |||||||||||| ||||||||||||   ||||||||||||||||||||||||||||||||||||| | ||||| |||||    
T  3114185 tacaaaaagaaaaa-tttgggcaatctgaaaattgtcacacacaaataggtcttggaattttatttagcacactattgacgggttcatgtctct 3114093  T

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Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 285 - 363
Target Start/End: Complemental strand, 37002219 - 37002141
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||| |||||| ||||| | ||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  37002219 tttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctctct 37002141  T

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Target: chr7; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 285 - 363
Target Start/End: Original strand, 26624838 - 26624916
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||| |||||| ||||| | |||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  26624838 tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 26624916  T

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Target: chr7; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 285 - 363
Target Start/End: Original strand, 36658273 - 36658351
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||| |||||| ||||| | |||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  36658273 tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 36658351  T

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Target: chr7; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 285 - 363
Target Start/End: Original strand, 7002817 - 7002895
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    ||||| ||||||||||||| ||||| | |||||||||  |||||||||||||||||||||||||| | |||||||||||    
T  7002817 tttggacaatctaaaaattctcacacgcaaataggtcacggaattttatttagcacactattgacgggttcatctctct 7002895  T

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Target: chr7; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 285 - 363
Target Start/End: Original strand, 7048688 - 7048766
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    ||||| ||||||||||||| ||||| | |||||||||  |||||||||||||||||||||||||| | |||||||||||    
T  7048688 tttggacaatctaaaaattctcacacgcaaataggtcacggaattttatttagcacactattgacgggttcatctctct 7048766  T

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Target: chr7; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 285 - 363
Target Start/End: Original strand, 35090260 - 35090338
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||| ||||| |||||| ||||| | |||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  35090260 tttgggtaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacggattcatctctct 35090338  T

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Target: chr7; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 285 - 359
Target Start/End: Complemental strand, 38638311 - 38638237
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatct 359  Q
    |||||||||||| |||||| ||||| | |||||||||| |||||||||||||||||||||||||| | |||||||    
T  38638311 tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatct 38638237  T

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Target: chr7; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 285 - 363
Target Start/End: Complemental strand, 40920078 - 40920000
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    ||||| |||||| |||||| ||||| | |||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  40920078 tttggacaatctgaaaattctcacatgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 40920000  T

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Target: chr7; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 285 - 363
Target Start/End: Complemental strand, 43184543 - 43184465
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||| |||||| ||||| | ||||||||||  ||||||||||||||||||||||||| | |||||||||||    
T  43184543 tttgggcaatctgaaaattctcacacgcaaataggtctctgaattttatttagcacactattgacgggttcatctctct 43184465  T

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Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 285 - 363
Target Start/End: Complemental strand, 8867806 - 8867728
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||  |||||| ||||| | |||||||||| |||||||||||||||||||||||||| | |||||| ||||    
T  8867806 tttgggcaatcggaaaattttcacacgcaaataggtctcggaattttatttagcacactattgacggattcatcactct 8867728  T

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Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 285 - 363
Target Start/End: Complemental strand, 34389131 - 34389053
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||| |||||| ||||| | |||||||||| |||||||||||||||||| ||| ||| | |||||||||||    
T  34389131 tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacattatcgacgggttcatctctct 34389053  T

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Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 8867897 - 8867857
Alignment:
Q  200 gcgaccccgggcggtcgcccgggctcgattgataatttttg 240  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  8867897 gcgaccccgggcggtcgcccgggctcgatcgataatttttg 8867857  T

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Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 34389222 - 34389182
Alignment:
Q  200 gcgaccccgggcggtcgcccgggctcgattgataatttttg 240  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  34389222 gcgaccccgggcggtcgcccgggctcgatcgataatttttg 34389182  T

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Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 349
Target Start/End: Original strand, 33685656 - 33685720
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgac 349  Q
    |||||||||||| |||||| ||| | | ||||| ||||   ||||||||||||||||||||||||    
T  33685656 tttgggcaatctgaaaattctcatacgcaaatatgtctcataattttatttagcacactattgac 33685720  T

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Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 179 - 363
Target Start/End: Original strand, 20129290 - 20129480
Alignment:
Q  179 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 270  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||        |||||||||||||| || |||||||||||     
T  20129290 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccc-attaacacattt 20129388  T
Q  271 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    ||            |||||||||||| |||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  20129389 acaaaaagaaaaa-tttgggcaatctgaaaattgtcacacgtaaataggtcttagaattttatttggcacactattgacagtttcatctctct 20129480  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 179 - 363
Target Start/End: Complemental strand, 26439466 - 26439276
Alignment:
Q  179 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 270  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||        |||||||||||||| || |||||||||||     
T  26439466 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagccc-attaacacattt 26439368  T
Q  271 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |             |||||||||||| |||||||||||| |||||||||||||| ||||||||||  ||||||||||||||||||||||||||    
T  26439367 a-taaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgacagtttcatctctct 26439276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 179 - 363
Target Start/End: Complemental strand, 34407471 - 34407281
Alignment:
Q  179 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 270  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||        |||||||||||||| || |||||||||||     
T  34407471 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagccc-attaacacattt 34407373  T
Q  271 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |             |||||||||||| |||||||||||| |||||||||||||| ||||||||||  ||||||||||||||||||||||||||    
T  34407372 a-taaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgacagtttcatctctct 34407281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 179 - 363
Target Start/End: Original strand, 47500753 - 47500943
Alignment:
Q  179 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 270  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||        |||||||| |||||  | |||||||||||     
T  47500753 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctc-attaacacattt 47500851  T
Q  271 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |             |||||||||| | |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  47500852 a-tgaaaagaaaaatttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctctct 47500943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 178 - 363
Target Start/End: Original strand, 13012167 - 13012358
Alignment:
Q  178 ccatgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacatt 269  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||        | |||||| |||||  | |||||||||||    
T  13012167 ccatgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagattcaaccaaaaagctc-attaacacatt 13012265  T
Q  270 cacnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
     |             |||||||||| | |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  13012266 ta-taaaaagaaaaatttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctctct 13012358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 179 - 363
Target Start/End: Original strand, 43355884 - 43356074
Alignment:
Q  179 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 270  Q
    |||||||||||| |||||||||||||||| ||| |||||||||||||| | |||||||||||        |||||||||||||| || |||||||||||     
T  43355884 catgggcggttccaccgtgtagcgaccccaggcagtcgcccgggctcggtcgataatttttgcacattagactcaacccaaaagccc-attaacacattt 43355982  T
Q  271 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |             |||||||||||| |||||||||||| |||||||||||||| ||||||||||  ||||||||||||||||||||||||||    
T  43355983 a-taaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgacagtttcatctctct 43356074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 179 - 363
Target Start/End: Original strand, 25930688 - 25930878
Alignment:
Q  179 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 270  Q
    |||||||||||||||||| | ||||||| |||||||||||||||||||||  ||||||||||        |||||||||||||| || |||||||||||     
T  25930688 catgggcggttctaccgtatggcgaccctgggcggtcgcccgggctcgatctataatttttgcacattaaactcaacccaaaagccc-attaacacattt 25930786  T
Q  271 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    ||            |||||||||| | |||||||||||| | ||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  25930787 acaaaaagaaaaa-tttgggcaatttgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctctct 25930878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 183 - 363
Target Start/End: Complemental strand, 36382528 - 36382343
Alignment:
Q  183 ggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattcacnn 274  Q
    |||||||||||||| | |||||||||||||||||||||||||||||  ||||||||||        |||||||| |||||||| ||||||||||| ||      
T  36382528 ggcggttctaccgtatggcgaccccgggcggtcgcccgggctcgatccataatttttgcacattaaactcaaccaaaaagtcc-attaacacatttacaa 36382430  T
Q  275 nnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
              ||||| |||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  36382429 aagaaaaa--tttggacaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctctct 36382343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 285 - 363
Target Start/End: Original strand, 6235612 - 6235690
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||| | |||||||||||| | ||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  6235612 tttgggcaatttgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctctct 6235690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 285 - 363
Target Start/End: Complemental strand, 3292971 - 3292893
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||| |||||| ||||| | |||||||||| ||||||||||||||||||||||||||   |||||||||||    
T  3292971 tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgagttcatctctct 3292893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 285 - 363
Target Start/End: Complemental strand, 13392956 - 13392878
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    ||||||||||||||||||| ||||| | |||||||||| | |||||||||||||||||||||||  | |||||||||||    
T  13392956 tttgggcaatctaaaaattctcacacgcaaataggtctcgaaattttatttagcacactattgaatgattcatctctct 13392878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 285 - 363
Target Start/End: Complemental strand, 13396095 - 13396017
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    ||||||||||||||||||| ||||| | |||||||||| | |||||||||||||||||||||||  | |||||||||||    
T  13396095 tttgggcaatctaaaaattctcacacgcaaataggtctcgaaattttatttagcacactattgaatgattcatctctct 13396017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 285 - 363
Target Start/End: Complemental strand, 28877325 - 28877247
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||| |||||||||||| ||||| | |||||||||| |||||||||||||||||||||||||  | |||||||||||    
T  28877325 tttgggaaatctaaaaattctcacacgcaaataggtctcggaattttatttagcacactattgatgggttcatctctct 28877247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 285 - 363
Target Start/End: Complemental strand, 30216817 - 30216739
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||| |||||| ||||| | |||||| ||| |||||||||||||||||||||||||| | |||||||||||    
T  30216817 tttgggcaatctgaaaattctcacatgcaaatagatctcggaattttatttagcacactattgacgggttcatctctct 30216739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 285 - 363
Target Start/End: Original strand, 40529107 - 40529185
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    ||||| |||| | |||||||||||| | ||||||||||||||||||||||||||||||||||||| | ||||| |||||    
T  40529107 tttggacaatttgaaaattgtcacatgcaaataggtcttggaattttatttagcacactattgacgggttcatatctct 40529185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 285 - 363
Target Start/End: Original strand, 48989420 - 48989498
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||| |||||| ||| | | |||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  48989420 tttgggcaatctgaaaattctcatacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 48989498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 286 - 363
Target Start/End: Complemental strand, 50205151 - 50205074
Alignment:
Q  286 ttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||| |||||| |||||| ||||| | ||||||||||||||||||||||||||||||||||||| | |||||| ||||    
T  50205151 ttggacaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatcactct 50205074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 285 - 363
Target Start/End: Original strand, 1817809 - 1817887
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    ||||||||||||||||||| | ||| | |||||||||| ||||||||||||| |||||||||| | | |||||||||||    
T  1817809 tttgggcaatctaaaaattcttacacgcaaataggtctcggaattttatttaacacactattgtcggattcatctctct 1817887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 363
Target Start/End: Complemental strand, 29319892 - 29319702
Alignment:
Q  179 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataattttt--------gactcaacccaaaagtcctattaacacattc 270  Q
    |||||||||||||||||| | | |||||| |||||||| || |||||||| ||||||||||        |||||||||||||| ||| |||||||||||     
T  29319892 catgggcggttctaccgtatggtgacccctggcggtcgtccaggctcgatcgataatttttgcacattagactcaacccaaaa-tcccattaacacattt 29319794  T
Q  271 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    ||            |||| ||||||| ||||||||||||   ||||| ||||||||||||||||||||||||||||||| | ||||| |||||    
T  29319793 ac-aaaaagaaaaatttgagcaatctgaaaattgtcacacacaaataagtcttggaattttatttagcacactattgacgggttcatgtctct 29319702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 285 - 363
Target Start/End: Complemental strand, 42333851 - 42333773
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||| |||||| ||||| | |||||||||| ||||||||||||||||||| ||||| |  |||||||||||    
T  42333851 tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacacaattgataagttcatctctct 42333773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 285 - 363
Target Start/End: Complemental strand, 43143659 - 43143581
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||| |||||| ||||| | |||||||||| ||||||||||||||||||| |||||  | |||||||||||    
T  43143659 tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacacaattgatgggttcatctctct 43143581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 285 - 363
Target Start/End: Original strand, 44156743 - 44156821
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    ||||| |||||| |||||| || || | |||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  44156743 tttggacaatctgaaaattctctcacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 44156821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 285 - 363
Target Start/End: Complemental strand, 6690310 - 6690232
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    ||||||||| || |||||| ||||| | |||||||||| | |||||||||||||||||||||||| | ||| |||||||    
T  6690310 tttgggcaaactgaaaattctcacacgcaaataggtctcgaaattttatttagcacactattgacgggttcgtctctct 6690232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 285 - 363
Target Start/End: Original strand, 35546045 - 35546123
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||| |||||| ||||| | |||| |||||  ||||||||||||||||||||||||  | |||||||||||    
T  35546045 tttgggcaatctgaaaattctcacacgcaaatgggtctctgaattttatttagcacactattgatgggttcatctctct 35546123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 6690401 - 6690361
Alignment:
Q  200 gcgaccccgggcggtcgcccgggctcgattgataatttttg 240  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  6690401 gcgaccccgggcggtcgcccgggctcgatcgataatttttg 6690361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 30216908 - 30216868
Alignment:
Q  200 gcgaccccgggcggtcgcccgggctcgattgataatttttg 240  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  30216908 gcgaccccgggcggtcgcccgggctcgatcgataatttttg 30216868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 285 - 363
Target Start/End: Complemental strand, 17511309 - 17511230
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttgg-aattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||| | |||||||| ||| | ||||||||||||| |||||||||||||||| ||||||  | |||||||||||    
T  17511309 tttgggcaatttgaaaattgttacacgcaaataggtcttggaaattttatttagcacattattgatcggttcatctctct 17511230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 240
Target Start/End: Complemental strand, 43143749 - 43143710
Alignment:
Q  201 cgaccccgggcggtcgcccgggctcgattgataatttttg 240  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  43143749 cgaccccgggcggtcgcccgggctcgatcgataatttttg 43143710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 240
Target Start/End: Complemental strand, 3293060 - 3293022
Alignment:
Q  202 gaccccgggcggtcgcccgggctcgattgataatttttg 240  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  3293060 gaccccgggcggtcgcccgggctcgatcgataatttttg 3293022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 7769307 - 7769369
Alignment:
Q  178 ccatgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg 240  Q
    ||||||||||||  |||||   |||||||| |||||||||||||||||||| |||||||||||    
T  7769307 ccatgggcggtttcaccgtccggcgaccccaggcggtcgcccgggctcgatcgataatttttg 7769369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 363
Target Start/End: Complemental strand, 10352959 - 10352881
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||| |||||| | ||| | |||||||||| ||||||||||||||||||| | || | | |||||||||||    
T  10352959 tttgggcaatctgaaaattcttacacgcaaataggtctcggaattttatttagcacaccagtgtcggattcatctctct 10352881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 361
Target Start/End: Complemental strand, 29996058 - 29995982
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctct 361  Q
    |||||||||||| |||||| |  || | |||||| ||| ||||||||||| |||||||||||||| | |||||||||    
T  29996058 tttgggcaatctgaaaattcttgcacgcaaatagttctcggaattttattaagcacactattgacggattcatctct 29995982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 49908818 - 49908782
Alignment:
Q  200 gcgaccccgggcggtcgcccgggctcgattgataatt 236  Q
    ||||||||||||||||||||||||||||| |||||||    
T  49908818 gcgaccccgggcggtcgcccgggctcgatcgataatt 49908782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 347
Target Start/End: Original strand, 26448144 - 26448206
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattg 347  Q
    |||||||||||| |||||| ||| |   |||||||| | ||||||||||||||||||||||||    
T  26448144 tttgggcaatctgaaaattctcatacacaaataggtttcggaattttatttagcacactattg 26448206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 27363344 - 27363390
Alignment:
Q  182 gggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgat 228  Q
    |||||||| |||||| | |||||| ||||||||||||||||||||||    
T  27363344 gggcggttttaccgtatggcgacctcgggcggtcgcccgggctcgat 27363390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 363
Target Start/End: Complemental strand, 30077678 - 30077628
Alignment:
Q  313 aaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||| ||||||||||||||||||| || | | |||||||||||    
T  30077678 aaataggtcttgaaattttatttagcacactagtgccggattcatctctct 30077628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 30110108 - 30110145
Alignment:
Q  326 aattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||||||||||||||| | |||||||||||    
T  30110108 aattttatttagcacactattgacgggttcatctctct 30110145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 48130111 - 48130148
Alignment:
Q  326 aattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||||||||||||||| | |||||||||||    
T  48130111 aattttatttagcacactattgacgggttcatctctct 48130148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 5517530 - 5517494
Alignment:
Q  200 gcgaccccgggcggtcgcccgggctcgattgataatt 236  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  5517530 gcgaccccgggcggtcgcctgggctcgatcgataatt 5517494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 10353050 - 10353010
Alignment:
Q  200 gcgaccccgggcggtcgcccgggctcgattgataatttttg 240  Q
    |||||||| ||||||||||||||||| || |||||||||||    
T  10353050 gcgacccctggcggtcgcccgggctcaatcgataatttttg 10353010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 50205243 - 50205203
Alignment:
Q  200 gcgaccccgggcggtcgcccgggctcgattgataatttttg 240  Q
    |||| |||||||||||||||| ||||||| |||||||||||    
T  50205243 gcgatcccgggcggtcgcccgagctcgatcgataatttttg 50205203  T

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Target: scaffold0069 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 178 - 363
Target Start/End: Original strand, 17821 - 18012
Alignment:
Q  178 ccatgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacatt 269  Q
    ||||||||||||||||||||| ||||||||| ||| ||| ||||||||||| |||||||||||        |||||||||||||| || |||||||||||    
T  17821 ccatgggcggttctaccgtgtggcgaccccgagcgatcgtccgggctcgatcgataatttttgcacattagactcaacccaaaagccc-attaacacatt 17919  T
Q  270 cacnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
     ||            |||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  17920 tacaaaaagaaaaa-tttgggcaatctgaaaattgtcacatgtaaataggtcttgaaattttatttagcacactattgacagtttcatctctct 18012  T

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Target: scaffold0002 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 179 - 363
Target Start/End: Complemental strand, 480644 - 480454
Alignment:
Q  179 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 270  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||        |||||||| |||||  | |||||||||||     
T  480644 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctc-attaacacattt 480546  T
Q  271 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |             |||||||||| | |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  480545 a-taaaaagaaaaatttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctctct 480454  T

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Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 179 - 363
Target Start/End: Original strand, 398597 - 398787
Alignment:
Q  179 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 270  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||        |||||||| |||||  | |||||||||||     
T  398597 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctc-attaacacattt 398695  T
Q  271 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |             |||||||||| | |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  398696 a-taaaaagaaaaatttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctctct 398787  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 285 - 363
Target Start/End: Original strand, 13837913 - 13837991
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||| | ||||| |||||    
T  13837913 tttgggcaatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatgtctct 13837991  T

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Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 285 - 363
Target Start/End: Original strand, 18339198 - 18339276
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||| |||||| ||||| | |||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  18339198 tttgggcaatctgaaaattctcacatgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 18339276  T

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Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 285 - 363
Target Start/End: Original strand, 28996822 - 28996900
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||| |||||| ||||| | |||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  28996822 tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 28996900  T

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Target: chr6; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 179 - 363
Target Start/End: Complemental strand, 34948945 - 34948755
Alignment:
Q  179 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 270  Q
    |||||||||||||||||| | |||||||| ||||||||||| |||||||| |||||||||||        |||||||||||||| || |||||||||||     
T  34948945 catgggcggttctaccgtatggcgaccccaggcggtcgcccaggctcgatcgataatttttgcacattagactcaacccaaaagccc-attaacacattt 34948847  T
Q  271 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    ||            |||||||||||| ||||||||||||   |||||| ||||| |||||||||||||||||||||||| | ||||| |||||    
T  34948846 acaaaaagaaaaa-tttgggcaatctgaaaattgtcacacacaaatagatcttgaaattttatttagcacactattgacgggttcatgtctct 34948755  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 285 - 363
Target Start/End: Original strand, 29743375 - 29743453
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||| |||||| | ||| | |||||||||| ||||||||||||||||||||| || | | |||||||||||    
T  29743375 tttgggcaatctgaaaattcttacacgcaaataggtctcggaattttatttagcacactagtgccggattcatctctct 29743453  T

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Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 285 - 363
Target Start/End: Complemental strand, 33229411 - 33229333
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||| |||||| | ||| ||||||| |||| || ||||||||||||||||||||| | | |||||||||||    
T  33229411 tttgggcaatctgaaaattcttacacgtaaataagtctcgggattttatttagcacactattgccggattcatctctct 33229333  T

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Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 13837801 - 13837862
Alignment:
Q  179 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg 240  Q
    |||||||||||||||||| | ||||||||||||| |||| |||| ||||| |||||||||||    
T  13837801 catgggcggttctaccgtatggcgaccccgggcgatcgctcgggttcgatcgataatttttg 13837862  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 18339107 - 18339147
Alignment:
Q  200 gcgaccccgggcggtcgcccgggctcgattgataatttttg 240  Q
    |||||||||||||||||||||||||||||  ||||||||||    
T  18339107 gcgaccccgggcggtcgcccgggctcgatcaataatttttg 18339147  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 28996731 - 28996771
Alignment:
Q  200 gcgaccccgggcggtcgcccgggctcgattgataatttttg 240  Q
    ||||||||||||||||||||| ||||||| |||||||||||    
T  28996731 gcgaccccgggcggtcgcccgagctcgatcgataatttttg 28996771  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 235
Target Start/End: Original strand, 13647018 - 13647053
Alignment:
Q  200 gcgaccccgggcggtcgcccgggctcgattgataat 235  Q
    ||||||||||||||||||||||||||||| ||||||    
T  13647018 gcgaccccgggcggtcgcccgggctcgatcgataat 13647053  T

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Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 179 - 363
Target Start/End: Original strand, 26144235 - 26144425
Alignment:
Q  179 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 270  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||        |||||||| |||||  | |||||||||||     
T  26144235 catgggcggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctc-attaacacattt 26144333  T
Q  271 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |             |||||||||| | |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26144334 a-taaaaagaaaaatttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctctct 26144425  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 179 - 363
Target Start/End: Original strand, 7433425 - 7433615
Alignment:
Q  179 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 270  Q
    |||||||||||||||||| | || |||||||||||||||||| |||||||  ||||||||||        |||||||||||||| || |||||||||||     
T  7433425 catgggcggttctaccgtatggcaaccccgggcggtcgcccgagctcgatctataatttttgcacattagactcaacccaaaagccc-attaacacattt 7433523  T
Q  271 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    ||            |||||||||||||||||||||||||   |||||||||||| |||||||||||||||||||||||| | ||||| |||||    
T  7433524 acaaaaagaaaat-tttgggcaatctaaaaattgtcacacacaaataggtcttgaaattttatttagcacactattgacgggttcatgtctct 7433615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 285 - 363
Target Start/End: Complemental strand, 32982131 - 32982053
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    ||||| |||||| ||||||||||||   |||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  32982131 tttggacaatctgaaaattgtcacacacaaataggtcttggaattttatttagcactctattgacagattcatctctct 32982053  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 285 - 363
Target Start/End: Original strand, 3829076 - 3829153
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||| |||||| ||| | | |||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  3829076 tttgggcaatctgaaaattttcatacgcaaataggtct-ggaattttatttagcacactattgacgggttcatctctct 3829153  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 285 - 359
Target Start/End: Original strand, 17445405 - 17445479
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatct 359  Q
    |||||||||||| |||||| ||||| | |||||||||| |||||||||||||||||| ||||||| | |||||||    
T  17445405 tttgggcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacattattgacgggttcatct 17445479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 285 - 363
Target Start/End: Complemental strand, 42311016 - 42310938
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||| |||||||||||| | ||||| |||||| |||||||||||| || |||||||| | |||||||||||    
T  42311016 tttgggcaatctgaaaattgtcacacgcaaataagtcttgaaattttatttagtacgctattgacgggttcatctctct 42310938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 285 - 363
Target Start/End: Complemental strand, 321452 - 321374
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||| |||||| ||| | | |||||||||| ||||||||||||| |||| ||||||| | |||||||||||    
T  321452 tttgggcaatctgaaaattctcatatgcaaataggtctcggaattttatttaacacattattgacgggttcatctctct 321374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 285 - 363
Target Start/End: Original strand, 35907644 - 35907722
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||| ||||| |||||| ||||| | |||||||||| |||||||||||||||||| |||||||   |||||||||||    
T  35907644 tttgggtaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacattattgacgagttcatctctct 35907722  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 23313218 - 23313276
Alignment:
Q  179 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataattt 237  Q
    |||||||||||||||||| | |||| | |||||||| ||||||||||||||||| ||||    
T  23313218 catgggcggttctaccgtatggcgatctcgggcggttgcccgggctcgattgatgattt 23313276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 240
Target Start/End: Complemental strand, 32982236 - 32982182
Alignment:
Q  186 ggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg 240  Q
    ||||||||||| | |||||||||||||||||| ||||| |||| |||||||||||    
T  32982236 ggttctaccgtatggcgaccccgggcggtcgcgcgggcccgatcgataatttttg 32982182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 240
Target Start/End: Complemental strand, 42311125 - 42311067
Alignment:
Q  182 gggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg 240  Q
    ||||||||||||||| | |||||||| | || ||||||||||||||| |||||||||||    
T  42311125 gggcggttctaccgtatggcgaccccagacgatcgcccgggctcgatcgataatttttg 42311067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 41972464 - 41972401
Alignment:
Q  176 acccatgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg 240  Q
    ||||| ||||||||| |||||  |||||||||||||||||| || |||||||| |||||||||||    
T  41972464 acccaggggcggttccaccgtccagcgaccccgggcggtcg-cctggctcgatcgataatttttg 41972401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 33489839 - 33489876
Alignment:
Q  326 aattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||||||||||||||| | |||||||||||    
T  33489839 aattttatttagcacactattgacgggttcatctctct 33489876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 363
Target Start/End: Complemental strand, 41972290 - 41972253
Alignment:
Q  326 aattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||||||||||||||| | |||||||||||    
T  41972290 aattttatttagcacactattgacgggttcatctctct 41972253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 35907553 - 35907593
Alignment:
Q  200 gcgaccccgggcggtcgcccgggctcgattgataatttttg 240  Q
    |||||| |||||||||||||||||| ||| |||||||||||    
T  35907553 gcgacctcgggcggtcgcccgggcttgatcgataatttttg 35907593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2142 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 178 - 363
Target Start/End: Original strand, 501 - 692
Alignment:
Q  178 ccatgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacatt 269  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||        |||||||| |||||  | |||||||||||    
T  501 ccatgggcggttccaccgtgtagcgatcccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctc-attaacacatt 599  T
Q  270 cacnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
     |             |||||||||| | |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  600 ta-taaaaagaaaaatttgggcaatttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgacagtttcatctctct 692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 179 - 363
Target Start/End: Original strand, 39914495 - 39914684
Alignment:
Q  179 catgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattc 270  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||        |||||||| |||||  | |||||||||||     
T  39914495 catggacggttccaccgtgtagcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctc-attaacacattt 39914593  T
Q  271 acnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |             |||||||||| | |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39914594 a--taaaaaaaaaatttgggcaatttgaaaattgtcacaagtaaataggtcttggaattttatttggcacactattgacagtttcatctctct 39914684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 183 - 349
Target Start/End: Original strand, 15838270 - 15838441
Alignment:
Q  183 ggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaacacattcacnn 274  Q
    |||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||        |||||||| |||||||| ||||||||||| ||      
T  15838270 ggcggttctaccgtatggcgaccccgggcggtcacccgggctcgattgataatttttgcacattaaactcaaccaaaaagtcc-attaacacatttacaa 15838368  T
Q  275 nnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgac 349  Q
              |||||||||||| |||||| ||||| | |||||||||||||||||||||||||||||||||||||    
T  15838369 aagaaaaa--tttgggcaatctgaaaattttcacacgcaaataggtcttggaattttatttagcacactattgac 15838441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 172 - 363
Target Start/End: Complemental strand, 29728580 - 29728383
Alignment:
Q  172 atgtacccatgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg--------actcaacccaaaagtcctattaa 263  Q
    ||||||||| ||||||||||||||| | |||||||||| |||||||||| ||||||| ||||| |||||        ||||||||||||||  | |||||    
T  29728580 atgtacccaggggcggttctaccgtatggcgaccccggacggtcgcccgtgctcgatcgataaattttgcacattagactcaacccaaaagctc-attaa 29728482  T
Q  264 cacattcacnnnnnnnnnnnntttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||| ||            |||||||||||| |||||||| ||| | ||||||||||| ||||||||||||||||||||||||| | |||||||||||    
T  29728481 cacatttacaaaaagaaaaa-tttgggcaatctgaaaattgtgacacgcaaataggtcttcgaattttatttagcacactattgacgggttcatctctct 29728383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 285 - 363
Target Start/End: Complemental strand, 16788100 - 16788022
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||| |||| | ||||| | ||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  16788100 tttgggcaatcttaaaactctcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatctctct 16788022  T

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Target: chr8; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 285 - 361
Target Start/End: Complemental strand, 3648869 - 3648793
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctct 361  Q
    |||||||||||| |||||||||||| | || ||||| |||||||||||||||||||||||||||| | |||||||||    
T  3648869 tttgggcaatctgaaaattgtcacacgcaagtaggttttggaattttatttagcacactattgacgggttcatctct 3648793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 285 - 363
Target Start/End: Original strand, 4404100 - 4404178
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    ||||||||||||||||||| ||||| | |||||||||| ||||||||||||||||||| |||||  | |||||||||||    
T  4404100 tttgggcaatctaaaaattctcacacgcaaataggtctcggaattttatttagcacacaattgatgggttcatctctct 4404178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 285 - 363
Target Start/End: Original strand, 9877312 - 9877390
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||| |||||| ||||| | |||||||||| | |||||||||||||||||||||| ||  |||||||||||    
T  9877312 tttgggcaatctgaaaattctcacatgcaaataggtctcgaaattttatttagcacactattgtcaaattcatctctct 9877390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 285 - 363
Target Start/End: Original strand, 23402200 - 23402278
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||| |||||| ||||| | |||||||||| | ||||||||||| |||||||||||| | |||||||||||    
T  23402200 tttgggcaatctgaaaattctcacacgcaaataggtctcgaaattttatttaacacactattgactggttcatctctct 23402278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 285 - 363
Target Start/End: Complemental strand, 34136900 - 34136822
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||| |||||| ||||| | |||||||||| | ||||||||||||||||| |||||  | |||||||||||    
T  34136900 tttgggcaatctgaaaattctcacacgcaaataggtctcgaaattttatttagcacacaattgatgggttcatctctct 34136822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 42231029 - 42231105
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctct 361  Q
    |||||||||| | |||||| ||| | | ||||||||||  ||||||||||||||||||||||||| | |||||||||    
T  42231029 tttgggcaatttgaaaattctcatatgcaaataggtctcagaattttatttagcacactattgacggattcatctct 42231105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 34137013 - 34136951
Alignment:
Q  178 ccatgggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataatttttg 240  Q
    ||||||| ||||  ||||| | ||||||||| ||||||||||||||||||| |||||||||||    
T  34137013 ccatgggtggtttcaccgtctggcgaccccgagcggtcgcccgggctcgatcgataatttttg 34136951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 16788188 - 16788151
Alignment:
Q  203 accccgggcggtcgcccgggctcgattgataatttttg 240  Q
    |||||||||||||||||||||||||| |||||||||||    
T  16788188 accccgggcggtcgcccgggctcgatcgataatttttg 16788151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 4404009 - 4404049
Alignment:
Q  200 gcgaccccgggcggtcgcccgggctcgattgataatttttg 240  Q
    |||||||| |||||||||||||||||||| |||||||||||    
T  4404009 gcgaccccaggcggtcgcccgggctcgatcgataatttttg 4404049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 36408552 - 36408592
Alignment:
Q  200 gcgaccccgggcggtcgcccgggctcgattgataatttttg 240  Q
    |||||| |||||||||||||||||||||| |||||||||||    
T  36408552 gcgacctcgggcggtcgcccgggctcgatcgataatttttg 36408592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 239
Target Start/End: Complemental strand, 2729362 - 2729323
Alignment:
Q  200 gcgaccccgggcggtcgcccgggctcgattgataattttt 239  Q
    |||||||||||||| |||||||||||||| ||||||||||    
T  2729362 gcgaccccgggcggacgcccgggctcgatcgataattttt 2729323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 235
Target Start/End: Original strand, 23402109 - 23402144
Alignment:
Q  200 gcgaccccgggcggtcgcccgggctcgattgataat 235  Q
    ||||||||||||||||||||||||||||| ||||||    
T  23402109 gcgaccccgggcggtcgcccgggctcgatcgataat 23402144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 3648978 - 3648921
Alignment:
Q  182 gggcggttctaccgtgtagcgaccccgggcggtcgcccgggctcgattgataattttt 239  Q
    ||||||||||||||| | |||| || || | |||||||||||||||| ||||||||||    
T  3648978 gggcggttctaccgtatggcgatccgggacagtcgcccgggctcgatcgataattttt 3648921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 363
Target Start/End: Complemental strand, 40470509 - 40470472
Alignment:
Q  326 aattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||||||||||||||| | |||||||||||    
T  40470509 aattttatttagcacactattgacgggttcatctctct 40470472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 285 - 363
Target Start/End: Original strand, 5322 - 5400
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    |||||||||||| |||||| ||||| | |||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  5322 tttgggcaatctgaaaattctcacatgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 5400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 5231 - 5271
Alignment:
Q  200 gcgaccccgggcggtcgcccgggctcgattgataatttttg 240  Q
    |||||||||||||||||||||||||||||  ||||||||||    
T  5231 gcgaccccgggcggtcgcccgggctcgatcaataatttttg 5271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 285 - 363
Target Start/End: Original strand, 53017 - 53095
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    ||||| |||||| |||||| ||||| | |||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  53017 tttggacaatctgaaaattctcacatgcaaataggtctcggaattttatttagcacactattgacgggttcatctctct 53095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 285 - 363
Target Start/End: Original strand, 31572 - 31650
Alignment:
Q  285 tttgggcaatctaaaaattgtcacaggtaaataggtcttggaattttatttagcacactattgacagtttcatctctct 363  Q
    ||||| |||||| |||||| ||||  | |||||||||| | |||||||||| ||||||||||||||| |||||||||||    
T  31572 tttggacaatctgaaaattctcactcgcaaataggtctagtaattttattttgcacactattgacaggttcatctctct 31650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 31481 - 31521
Alignment:
Q  200 gcgaccccgggcggtcgcccgggctcgattgataatttttg 240  Q
    |||||||| | |||||||||||||||||| |||||||||||    
T  31481 gcgaccccagacggtcgcccgggctcgatcgataatttttg 31521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0769 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0769
Description:

Target: scaffold0769; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 228
Target Start/End: Original strand, 1278 - 1306
Alignment:
Q  200 gcgaccccgggcggtcgcccgggctcgat 228  Q
    |||||||||||||||||||||||||||||    
T  1278 gcgaccccgggcggtcgcccgggctcgat 1306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 228
Target Start/End: Original strand, 194029 - 194057
Alignment:
Q  200 gcgaccccgggcggtcgcccgggctcgat 228  Q
    |||||||||||||||||||||||||||||    
T  194029 gcgaccccgggcggtcgcccgggctcgat 194057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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