View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20786_high_2 (Length: 241)

Name: NF20786_high_2
Description: NF20786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20786_high_2
NF20786_high_2
[»] chr1 (20 HSPs)
chr1 (29-223)||(9637103-9637297)
chr1 (32-213)||(25017371-25017552)
chr1 (32-223)||(40864718-40864909)
chr1 (33-223)||(48606611-48606801)
chr1 (28-223)||(52753819-52754011)
chr1 (31-223)||(30559004-30559196)
chr1 (29-223)||(14498880-14499073)
chr1 (31-219)||(32379859-32380043)
chr1 (72-223)||(35948977-35949128)
chr1 (47-204)||(26272947-26273104)
chr1 (47-196)||(21973814-21973963)
chr1 (81-223)||(30054855-30054997)
chr1 (47-148)||(17127439-17127540)
chr1 (114-223)||(17874845-17874954)
chr1 (149-222)||(11843899-11843972)
chr1 (149-204)||(28463197-28463252)
chr1 (171-205)||(33489827-33489861)
chr1 (171-205)||(41972268-41972302)
chr1 (172-224)||(170447-170500)
chr1 (179-223)||(51053101-51053145)
[»] chr4 (15 HSPs)
chr4 (29-223)||(31944598-31944792)
chr4 (41-223)||(4325406-4325587)
chr4 (47-223)||(12211225-12211401)
chr4 (47-223)||(53693033-53693209)
chr4 (47-177)||(27364883-27365013)
chr4 (95-223)||(3074417-3074545)
chr4 (47-222)||(55464660-55464835)
chr4 (47-224)||(42843707-42843887)
chr4 (111-223)||(8897925-8898037)
chr4 (111-223)||(10632643-10632757)
chr4 (152-223)||(25182878-25182949)
chr4 (132-223)||(1147584-1147675)
chr4 (111-200)||(3240296-3240385)
chr4 (171-205)||(48130099-48130133)
chr4 (171-205)||(30110096-30110130)
[»] chr6 (9 HSPs)
chr6 (28-223)||(11970941-11971135)
chr6 (29-222)||(12180525-12180718)
chr6 (47-223)||(24074412-24074588)
chr6 (30-223)||(25340428-25340620)
chr6 (86-223)||(3050902-3051041)
chr6 (54-223)||(25599159-25599331)
chr6 (47-223)||(32441973-32442146)
chr6 (100-199)||(30621226-30621324)
chr6 (94-222)||(1296556-1296684)
[»] chr8 (22 HSPs)
chr8 (29-223)||(13152393-13152587)
chr8 (31-223)||(27190755-27190947)
chr8 (47-223)||(30791457-30791633)
chr8 (31-223)||(14446817-14447008)
chr8 (43-223)||(9256385-9256565)
chr8 (29-223)||(24333696-24333893)
chr8 (47-223)||(16532631-16532806)
chr8 (47-222)||(21958512-21958687)
chr8 (29-223)||(28846603-28846781)
chr8 (86-223)||(10014434-10014571)
chr8 (111-218)||(32372022-32372129)
chr8 (111-223)||(32359486-32359598)
chr8 (116-223)||(40146009-40146116)
chr8 (111-223)||(32342880-32342992)
chr8 (111-223)||(32355367-32355479)
chr8 (64-223)||(42446935-42447101)
chr8 (69-223)||(10467786-10467927)
chr8 (113-219)||(34228232-34228338)
chr8 (118-213)||(2826315-2826407)
chr8 (172-223)||(24592336-24592387)
chr8 (171-205)||(3435409-3435443)
chr8 (171-205)||(40470487-40470521)
[»] scaffold0019 (1 HSPs)
scaffold0019 (47-223)||(134853-135029)
[»] chr7 (19 HSPs)
chr7 (29-223)||(23179885-23180078)
chr7 (47-223)||(26493713-26493889)
chr7 (32-223)||(9230386-9230577)
chr7 (47-222)||(27387306-27387481)
chr7 (47-222)||(19399978-19400153)
chr7 (47-223)||(45197644-45197819)
chr7 (31-202)||(8638598-8638770)
chr7 (47-222)||(38575289-38575464)
chr7 (30-154)||(43727979-43728103)
chr7 (57-220)||(18375416-18375577)
chr7 (114-220)||(14088815-14088921)
chr7 (114-220)||(14398833-14398939)
chr7 (114-220)||(25491636-25491742)
chr7 (143-223)||(9557784-9557864)
chr7 (25-97)||(23804623-23804695)
chr7 (120-223)||(25024596-25024699)
chr7 (171-219)||(26782317-26782365)
chr7 (171-205)||(10868468-10868502)
chr7 (171-223)||(10224015-10224067)
[»] scaffold0178 (1 HSPs)
scaffold0178 (32-223)||(17725-17916)
[»] chr2 (17 HSPs)
chr2 (29-223)||(12539556-12539749)
chr2 (47-220)||(19951833-19952006)
chr2 (51-223)||(35649659-35649831)
chr2 (47-204)||(33453206-33453363)
chr2 (30-215)||(34317480-34317659)
chr2 (47-203)||(22483549-22483705)
chr2 (47-203)||(34526352-34526508)
chr2 (47-203)||(22464670-22464826)
chr2 (79-171)||(13308748-13308840)
chr2 (111-223)||(26656340-26656452)
chr2 (120-219)||(7886661-7886758)
chr2 (111-223)||(18425956-18426072)
chr2 (132-201)||(31392485-31392554)
chr2 (86-223)||(34907624-34907758)
chr2 (149-204)||(45121334-45121389)
chr2 (178-223)||(31392927-31392972)
chr2 (167-223)||(13309709-13309765)
[»] chr5 (15 HSPs)
chr5 (29-220)||(3055464-3055655)
chr5 (30-223)||(8785765-8785958)
chr5 (30-223)||(23244569-23244762)
chr5 (47-223)||(203851-204026)
chr5 (51-191)||(1280382-1280522)
chr5 (30-223)||(27168802-27168987)
chr5 (29-223)||(11852697-11852891)
chr5 (47-203)||(26540674-26540830)
chr5 (89-223)||(2228957-2229091)
chr5 (96-223)||(22712898-22713025)
chr5 (66-223)||(22541905-22542062)
chr5 (111-194)||(19518970-19519053)
chr5 (149-211)||(192060-192122)
chr5 (171-204)||(38269409-38269442)
chr5 (171-211)||(28801427-28801467)
[»] chr3 (16 HSPs)
chr3 (47-222)||(31989029-31989204)
chr3 (47-204)||(43137127-43137283)
chr3 (29-217)||(51261961-51262149)
chr3 (29-223)||(3856875-3857069)
chr3 (47-222)||(53710398-53710573)
chr3 (30-185)||(15667956-15668111)
chr3 (47-222)||(24908393-24908568)
chr3 (47-220)||(37381871-37382044)
chr3 (118-223)||(24988812-24988917)
chr3 (111-223)||(22934798-22934910)
chr3 (66-137)||(43585836-43585907)
chr3 (158-223)||(9743379-9743444)
chr3 (150-203)||(38282510-38282563)
chr3 (167-222)||(51408609-51408664)
chr3 (172-205)||(5135410-5135443)
chr3 (171-203)||(43585933-43585965)
[»] scaffold0007 (1 HSPs)
scaffold0007 (47-223)||(259918-260094)
[»] scaffold0015 (1 HSPs)
scaffold0015 (47-222)||(214161-214336)
[»] scaffold0002 (1 HSPs)
scaffold0002 (29-204)||(435366-435548)
[»] scaffold0168 (1 HSPs)
scaffold0168 (47-203)||(15814-15970)
[»] scaffold0198 (1 HSPs)
scaffold0198 (81-223)||(1430-1572)
[»] scaffold0012 (1 HSPs)
scaffold0012 (47-203)||(197105-197261)
[»] scaffold0726 (1 HSPs)
scaffold0726 (118-223)||(954-1059)


Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 29 - 223
Target Start/End: Original strand, 9637103 - 9637297
Alignment:
Q  29 gtgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgtt 128  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9637103 gtgagaaataattgttaccaacaagatcaatgatgcgtggttcaatgacttgatgatatgttacaccgagcgggtgatattcaagtcacttgatgatgtt 9637202  T
Q  129 gatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9637203 gatattatttgaacattcaccgcaaagaggtctcggaaagggcatttacatcctaattttatttagcacactattgataggttatgtttcatctc 9637297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 32 - 213
Target Start/End: Original strand, 25017371 - 25017552
Alignment:
Q  32 agaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgat 131  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||| ||||||||||||||||||    
T  25017371 agaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgatatcttacaccgagcgagagatattcaaatcacttgatgatgttgat 25017470  T
Q  132 attatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttat 213  Q
    |||||| |||| ||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||| |||||||    
T  25017471 attattcgaacgttcaccgcaaagaggtctcagaaagggcatatacctcctaattttatttagcacactattgacaggttat 25017552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 32 - 223
Target Start/End: Complemental strand, 40864909 - 40864718
Alignment:
Q  32 agaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgat 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| || | ||||||||||||||||||| ||||||||    
T  40864909 agaaataattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgatatcttacaccgaacgagggatattcaagtcacttgataatgttgat 40864810  T
Q  132 attatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    |||||| ||||||||||||||||||||| |  || ||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||    
T  40864809 attattcgaacattcaccgcaaagaggttttagaaagggcatttacctcctaattttatttagcacactattaacaggttatgttacatctc 40864718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 33 - 223
Target Start/End: Complemental strand, 48606801 - 48606611
Alignment:
Q  33 gaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgata 132  Q
    |||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  48606801 gaaagaattgctaccaacaagatcaacgatgtgtggttcaatgacttgatgatatgttacaccgagcgggagatattcaagtaacttgataatgttgata 48606702  T
Q  133 ttatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    |||||  |||| |||||||||||||||||  || |||||||||||||| |||||||||||||||||||||||  || ||||||||||||||    
T  48606701 ttattcaaacactcaccgcaaagaggtcttcgaaagggcatttacctcataattttatttagcacactattggcagattatgtttcatctc 48606611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 28 - 223
Target Start/End: Complemental strand, 52754011 - 52753819
Alignment:
Q  28 tgtgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgt 127  Q
    ||||||||| |||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||| ||||||||||    
T  52754011 tgtgagaaagaattattaccaacatgatcaacgatgtgtggttcaatgacttgatgatatgttacatcgaacgggagatattcaagtcatttgatgatgt 52753912  T
Q  128 tgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    |||||||||| |||||||   ||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||| | |||||||||||||||    
T  52753911 tgatattattcgaacatt---cgcaaagaggtctcggaaagggtatttacctcctaattttatctagcacactattgacaagttatgtttcatctc 52753819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 31 - 223
Target Start/End: Complemental strand, 30559196 - 30559004
Alignment:
Q  31 gagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttga 130  Q
    |||||| |||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||    
T  30559196 gagaaagaattgttatcaacaagatcaacgatgtgtggttctatgacttgatgatatgttacaccgagcgagagatattcaagtcacttgatgatgctga 30559097  T
Q  131 tattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    ||||||| |||||||||||| ||| || ||||  | | |  ||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  30559096 tattattcgaacattcaccgtaaatagatctcataaatgatatttacctcctaattttatttagcacactattggtagattatgtttcatctc 30559004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 29 - 223
Target Start/End: Original strand, 14498880 - 14499073
Alignment:
Q  29 gtgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgtt 128  Q
    |||||||| | |||||||||||| |||||||||| |||||| ||||||| ||||||||| ||||| |||||||||||||||||||||| |||||||||||    
T  14498880 gtgagaaagatttgttaccaacatgatcaacgatttgtggt-caatgacttgatgatatcttacatcgagcgggagatattcaagtcatttgatgatgtt 14498978  T
Q  129 gatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    ||||||||| ||||||||| |||||||||||||| || ||| |||||||||||||||| ||||||  |||||||||| | |||||||||||||||    
T  14498979 gatattattcgaacattcatcgcaaagaggtctcagaaaggacatttacctcctaattatatttaaaacactattgacaagttatgtttcatctc 14499073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 31 - 219
Target Start/End: Complemental strand, 32380043 - 32379859
Alignment:
Q  31 gagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttga 130  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| ||||   |||||||||| | |||||||||||||| |||||||||||||||||    
T  32380043 gagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgat---atgttacaccaaacgggagatattcaattcacttgatgatgttga 32379947  T
Q  131 tattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttca 219  Q
    ||||||| ||||||| | ||||||||||| ||| | | | ||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  32379946 tattattcgaacattta-cgcaaagaggtatcgaaaatgacatttacctcctaattttatttagcacactattgacaggttatgattca 32379859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 72 - 223
Target Start/End: Complemental strand, 35949128 - 35948977
Alignment:
Q  72 aatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggc 171  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||| ||| |    
T  35949128 aatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatgttattcgaacattcaccgaaaagaggtctcggaaaggac 35949029  T
Q  172 atttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    ||||||||||||||||||||| |||| |||| ||||| |||| |||||||||    
T  35949028 atttacctcctaattttattttgcacgctatagatagattatatttcatctc 35948977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 47 - 204
Target Start/End: Complemental strand, 26273104 - 26272947
Alignment:
Q  47 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 146  Q
    |||||| ||||||||||||| |||||||||  ||||||||||||||| ||||| ||||||||||||||||| |||||||||| |||||||| ||||||||    
T  26273104 caacaaaatcaacgatgtgttgttcaatgatttgatgatatgttacatcgagcaggagatattcaagtcacgtgatgatgttaatattattcgaacattc 26273005  T
Q  147 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattg 204  Q
    | |||||| |||||||||| |||||| |||||| ||||||||||||||||||||||||    
T  26273004 atcgcaaacaggtctcggaaagggcaattacctactaattttatttagcacactattg 26272947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 47 - 196
Target Start/End: Complemental strand, 21973963 - 21973814
Alignment:
Q  47 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 146  Q
    ||||||||| ||| ||| |||||| |||||  |||||||||||||||| ||||||||||||||||| |||||||||||  ||||||||||| ||||||||    
T  21973963 caacaagattaacaatgagtggttaaatgatttgatgatatgttacactgagcgggagatattcaaatcacttgatgacattgatattattcgaacattc 21973864  T
Q  147 accgcaaagaggtctcggatagggcatttacctcctaattttatttagca 196  Q
    ||||||||||  ||||||| |||||||||||||||||||||||| |||||    
T  21973863 accgcaaagaaatctcggaaagggcatttacctcctaattttatctagca 21973814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 81 - 223
Target Start/End: Original strand, 30054855 - 30054997
Alignment:
Q  81 atgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctc 180  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||| |||||| |||| ||| |||||||||||| ||  | | | ||||||||||    
T  30054855 atgatatgttacaccgagcgggagatattcaagtcacttgatcatattgacattattcgaaccttctccgcaaagaggtatcataaatgacatttacctc 30054954  T
Q  181 ctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    |||||||||||||||||| |||||| | |||||||||||||||    
T  30054955 ctaattttatttagcacattattgacacgttatgtttcatctc 30054997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 47 - 148
Target Start/End: Original strand, 17127439 - 17127540
Alignment:
Q  47 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 146  Q
    ||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  17127439 caacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccgagcgggagatattcaagtcgcttgatgatgttgatattattcgaacattc 17127538  T
Q  147 ac 148  Q
    ||    
T  17127539 ac 17127540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 114 - 223
Target Start/End: Original strand, 17874845 - 17874954
Alignment:
Q  114 tcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttat 213  Q
    ||||| ||||||||||||||||||  |||||||||||||||||||||||| | ||  ||||||||| ||||||||||||| ||||||||||| || ||||    
T  17874845 tcactggatgatgttgatattattcaaacattcaccgcaaagaggtctcgaaaagatcatttaccttctaattttatttaccacactattgacagattat 17874944  T
Q  214 gtttcatctc 223  Q
     |||||||||    
T  17874945 atttcatctc 17874954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 11843972 - 11843899
Alignment:
Q  149 cgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatct 222  Q
    |||||| ||||||| || ||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  11843972 cgcaaataggtctctgaaaggacatttacctcctaattttatttagcacactattggtaggttatatttcatct 11843899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 204
Target Start/End: Original strand, 28463197 - 28463252
Alignment:
Q  149 cgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattg 204  Q
    ||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||    
T  28463197 cgcaaagaggtcttggaaagggcattcacctcctaattttatttagcacactattg 28463252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 171 - 205
Target Start/End: Original strand, 33489827 - 33489861
Alignment:
Q  171 catttacctcctaattttatttagcacactattga 205  Q
    |||||||||||||||||||||||||||||||||||    
T  33489827 catttacctcctaattttatttagcacactattga 33489861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 171 - 205
Target Start/End: Complemental strand, 41972302 - 41972268
Alignment:
Q  171 catttacctcctaattttatttagcacactattga 205  Q
    |||||||||||||||||||||||||||||||||||    
T  41972302 catttacctcctaattttatttagcacactattga 41972268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 170500 - 170447
Alignment:
Q  172 atttacctcctaattttatttagcacactatt-gataggttatgtttcatctca 224  Q
    ||||||||||||||||||||||||||| |||| |  ||||||| ||||||||||    
T  170500 atttacctcctaattttatttagcacattattggcaaggttatatttcatctca 170447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 51053101 - 51053145
Alignment:
Q  179 tcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    ||||||||||||||||||||||||||| || |||| ||| |||||    
T  51053101 tcctaattttatttagcacactattgagagattatattttatctc 51053145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 159; Significance: 9e-85; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 29 - 223
Target Start/End: Original strand, 31944598 - 31944792
Alignment:
Q  29 gtgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgtt 128  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||    
T  31944598 gtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgatatgttacaccgagtgtgagatattcaagtcacttgatgatgtt 31944697  T
Q  129 gatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| | |||||||||||||||    
T  31944698 gatattattcgaacattcaccgcaaagaggtctcggaaagggcatttacctcctaattttatttagtacactattgacaagttatgtttcatctc 31944792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 41 - 223
Target Start/End: Original strand, 4325406 - 4325587
Alignment:
Q  41 tgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttga 140  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||  ||||||||||||||||||||||||||    
T  4325406 tgttaccaacaagatcaacgatgtgtggttcaatgacttgatgatatgttacaccgagtgggagataatcaacccacttgatgatgttgatattatttga 4325505  T
Q  141 acattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    |||||||| ||| | | ||||| || |||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  4325506 acattcacagcaga-atgtctcagaaagggcaattacctcctaattttatttagcacactattgacaggttatgttgcatctc 4325587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 47 - 223
Target Start/End: Complemental strand, 12211401 - 12211225
Alignment:
Q  47 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 146  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||| ||||||||    
T  12211401 caacaagatcaacgatgtgtggttcaatgacttgatgatatgttacaccgaacaggagatattcaagtcatttgatgatgttgatattattcgaacattc 12211302  T
Q  147 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    |   ||| ||||||||| | | | |||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  12211301 atttcaatgaggtctcgaaaatgacatttacctcctaattttatttagcacactattggtaggttatatttcatctc 12211225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 47 - 223
Target Start/End: Complemental strand, 53693209 - 53693033
Alignment:
Q  47 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 146  Q
    ||||| |||||||| |||||||||||||||| ||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||| ||||||||    
T  53693209 caacatgatcaacggtgtgtggttcaatgacttgatgatatgttacatcgagcgggagataatcaaggcacttgatgatgttgatattattcgaacattc 53693110  T
Q  147 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    | ||||||||||||||||| |||||||| ||||| |||||| ||||||||||||||||  | |||||||||||||||    
T  53693109 atcgcaaagaggtctcggaaagggcattcacctcttaatttcatttagcacactattggcaagttatgtttcatctc 53693033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 47 - 177
Target Start/End: Original strand, 27364883 - 27365013
Alignment:
Q  47 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 146  Q
    |||||||||||||  ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27364883 caacaagatcaacagtgtgtggttaaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcgaacattc 27364982  T
Q  147 accgcaaagaggtctcggatagggcatttac 177  Q
    |||| |||||||||||| | |||||||||||    
T  27364983 accgaaaagaggtctcgaaaagggcatttac 27365013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 95 - 223
Target Start/End: Original strand, 3074417 - 3074545
Alignment:
Q  95 cgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttag 194  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |  |||||||||| |||||||||||||||||    
T  3074417 cgagcgggagataatcaagtcacttgatgatgttgatattatttgaacattcatcgcaaagaggtctcaggaagggcatttatctcctaattttatttag 3074516  T
Q  195 cacactattgataggttatgtttcatctc 223  Q
    ||||||||||  | |||||||||||||||    
T  3074517 cacactattggcaagttatgtttcatctc 3074545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 47 - 222
Target Start/End: Complemental strand, 55464835 - 55464660
Alignment:
Q  47 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 146  Q
    ||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||    
T  55464835 caacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccgagcgggagaaaatcaagtcacttgatgatgttgatattattcgaacattc 55464736  T
Q  147 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatct 222  Q
    ||   |||||||   || | | ||||| |||||||||||||||||||||||   ||||  ||||||| ||||||||    
T  55464735 actcgaaagaggctacgaaaaaggcatctacctcctaattttatttagcacgtaattggcaggttatatttcatct 55464660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 47 - 224
Target Start/End: Original strand, 42843707 - 42843887
Alignment:
Q  47 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 146  Q
    ||||||||||||| |||||||||| |||||  ||||||||||||| |  ||| | |||||||||||||||||||||||||||||||||| | ||||||||    
T  42843707 caacaagatcaacaatgtgtggtttaatgagttgatgatatgttatattgagtgagagatattcaagtcacttgatgatgttgatattaatcgaacattc 42843806  T
Q  147 accgcaaa---gaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctca 224  Q
    ||| ||||   ||||||||||  |||||||| || |||||||||||||||||||  ||||| |  ||||| ||||||||||    
T  42843807 accacaaagaggaggtctcggggagggcattgacatcctaattttatttagcacgttattggtgagttatatttcatctca 42843887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 111 - 223
Target Start/End: Complemental strand, 8898037 - 8897925
Alignment:
Q  111 aagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggt 210  Q
    |||||||| |||||||||||||||||| || ||||||||||||||||||||| || ||   ||||||||||||||||||||||||| ||||||| ||| |    
T  8898037 aagtcactggatgatgttgatattattcgagcattcaccgcaaagaggtctcagaaagactatttacctcctaattttatttagcaaactattggtagtt 8897938  T
Q  211 tatgtttcatctc 223  Q
    ||| |||||||||    
T  8897937 tatatttcatctc 8897925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 111 - 223
Target Start/End: Complemental strand, 10632757 - 10632643
Alignment:
Q  111 aagtcacttgatgatgttgatattatttgaacatt--caccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgatag 208  Q
    |||||||||||||||||| || ||||| |||||||  ||||||||||| |||||||| |   |||||||||||||||||||||| ||||||||||| |||    
T  10632757 aagtcacttgatgatgttaatgttattcgaacattttcaccgcaaagaagtctcggaaatatcatttacctcctaattttattttgcacactattggtag 10632658  T
Q  209 gttatgtttcatctc 223  Q
     |||| |||||||||    
T  10632657 cttatatttcatctc 10632643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 152 - 223
Target Start/End: Complemental strand, 25182949 - 25182878
Alignment:
Q  152 aaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    |||||||||||| | |||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  25182949 aaagaggtctcgaaaagggtatttaccttctaattttatttagcacactattgataggttatatttcatctc 25182878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 132 - 223
Target Start/End: Original strand, 1147584 - 1147675
Alignment:
Q  132 attatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    |||||| |||||||||  |||||||||||||||| || | ||||||||||||||||| ||||  |||||||||| | |||||||||||||||    
T  1147584 attattcgaacattcattgcaaagaggtctcggaaagagtatttacctcctaattttctttaaaacactattgacaagttatgtttcatctc 1147675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 111 - 200
Target Start/End: Complemental strand, 3240385 - 3240296
Alignment:
Q  111 aagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacact 200  Q
    |||| ||||||||||||||||| |||| ||| ||||||||||||||| ||||| | | |  |||| |||||||||||||||||| |||||    
T  3240385 aagttacttgatgatgttgataatattcgaatattcaccgcaaagagatctcgaaaatgttatttgcctcctaattttatttagtacact 3240296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 171 - 205
Target Start/End: Original strand, 48130099 - 48130133
Alignment:
Q  171 catttacctcctaattttatttagcacactattga 205  Q
    |||||||||||||||||||||||||||||||||||    
T  48130099 catttacctcctaattttatttagcacactattga 48130133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 205
Target Start/End: Original strand, 30110096 - 30110130
Alignment:
Q  171 catttacctcctaattttatttagcacactattga 205  Q
    |||||||| ||||||||||||||||||||||||||    
T  30110096 catttaccacctaattttatttagcacactattga 30110130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 144; Significance: 8e-76; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 28 - 223
Target Start/End: Original strand, 11970941 - 11971135
Alignment:
Q  28 tgtgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgt 127  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||    
T  11970941 tgtgagaaagaattgttaccaataagatcaacgatgtgtggttcaatgacttgatcatatgttacaccgagcggaagatattcaagtcacttgatgatgt 11971040  T
Q  128 tgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    ||||||| |  |||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11971041 tgatattttgcgaacattcaccg-aaagaggtctcagaaagggcatttacctcctaattttatttagcacactattgacaggttatgtttcatctc 11971135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 29 - 222
Target Start/End: Complemental strand, 12180718 - 12180525
Alignment:
Q  29 gtgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgtt 128  Q
    |||||||| ||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||| ||||    
T  12180718 gtgagaaaaaattgttaccaacaagatcaacattgtgtggttcaatgacttgatgatatgttacaccgagtgggagaaattcaagtcacttgatgttgtt 12180619  T
Q  129 gatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatct 222  Q
    ||||||||| ||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||    
T  12180618 gatattattcgaacattcaccgcaaagaggtctcgggaagggcatttaccttctaattttatttagcacattattgacaggttatgtttcatct 12180525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 47 - 223
Target Start/End: Original strand, 24074412 - 24074588
Alignment:
Q  47 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 146  Q
    ||||||||||||| |||||||||  |||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||    
T  24074412 caacaagatcaacaatgtgtggtaaaatgacttgatgatatgttacaccgagggggagatattcaagttacttgatgatgttgatattattcgaacattc 24074511  T
Q  147 -accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
     |||| |||||||||||||| | | |||||||||||||||||||||||||||  | |||| || |||| |||||||||    
T  24074512 aaccggaaagaggtctcgga-atgacatttacctcctaattttatttagcacgtttttgacagattatatttcatctc 24074588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 30 - 223
Target Start/End: Original strand, 25340428 - 25340620
Alignment:
Q  30 tgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttg 129  Q
    |||||||||| || ||||||||||||||| |||||||| || | |||  ||||||||||||||||| || || ||||||| |||||||||||||||||||    
T  25340428 tgagaaataagtgctaccaacaagatcaatgatgtgtgattaagtgatttgatgatatgttacacccagtggaagatatttaagtcacttgatgatgttg 25340527  T
Q  130 atattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    |||||||| |||||||||||  ||||||||||| || || |||||||||||||||||||| ||| ||||||||||  || ||||||||||||||    
T  25340528 atattattcgaacattcaccataaagaggtctcagaaagtgcatttacctcctaatttta-ttaacacactattggcagattatgtttcatctc 25340620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 86 - 223
Target Start/End: Original strand, 3050902 - 3051041
Alignment:
Q  86 atgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaat 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||| || ||||||||| ||||||    
T  3050902 atgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcaaacattcaccggaaagaggtctcggaaagagcatttaccacctaat 3051001  T
Q  186 tttatttagcacactattgata--ggttatgtttcatctc 223  Q
    |||||||||||||||||||| |  |||||| |||||||||    
T  3051002 tttatttagcacactattgacacgggttatatttcatctc 3051041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 54 - 223
Target Start/End: Original strand, 25599159 - 25599331
Alignment:
Q  54 atcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacat---tcaccg 150  Q
    |||||||| ||| ||||||||||| ||||| ||||||||| |||| |||||||| ||||||||||||||||||||||||||||| ||||||   ||| ||    
T  25599159 atcaacgacgtgcggttcaatgacttgatggtatgttacatcgagtgggagataatcaagtcacttgatgatgttgatattattcgaacattcatcatcg 25599258  T
Q  151 caaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    ||||||||||||||| ||||||||||| ||||||||| ||||| ||||||||||  | ||||| |||||||||    
T  25599259 caaagaggtctcggaaagggcatttacgtcctaatttgatttaacacactattggcaagttatatttcatctc 25599331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 47 - 223
Target Start/End: Complemental strand, 32442146 - 32441973
Alignment:
Q  47 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 146  Q
    ||||| ||| ||||||||||||||||||||| | ||||||||||||| ||||||| ||||| | |  |||||||||||||||||||||||| ||||||||    
T  32442146 caacatgattaacgatgtgtggttcaatgactt-atgatatgttacatcgagcggaagataataa--tcacttgatgatgttgatattattcgaacattc 32442050  T
Q  147 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    | | ||||||||| ||||| |||||||||||||| |||||||||||||||||| ||||  | ||||||||| |||||    
T  32442049 atcccaaagaggtatcggaaagggcatttacctcttaattttatttagcacaccattggcaagttatgttttatctc 32441973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 100 - 199
Target Start/End: Original strand, 30621226 - 30621324
Alignment:
Q  100 gggagatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacac 199  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||||| || |||||||||||||| ||| ||||||||||||||||||||||| |||||    
T  30621226 gggagataatcaagtcacttgatgatgttgatattattcgaacattcatcg-aaagaggtctcggaaaggacatttacctcctaattttatttaacacac 30621324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 94 - 222
Target Start/End: Original strand, 1296556 - 1296684
Alignment:
Q  94 ccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttattta 193  Q
    |||||||||||||||||||||||||||||||| || ||||||||  || ||||||   |||||||||||||| ||| |||||||||||| ||||||||||    
T  1296556 ccgagcgggagatattcaagtcacttgatgatattaatattattcaaatattcacaataaagaggtctcggaaaggccatttacctccttattttattta 1296655  T
Q  194 gcacactattgataggttatgtttcatct 222  Q
     |||||||| |  ||||||| ||||||||    
T  1296656 ccacactatcggcaggttatatttcatct 1296684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 29 - 223
Target Start/End: Complemental strand, 13152587 - 13152393
Alignment:
Q  29 gtgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgtt 128  Q
    |||||||| |||||||||||||| |||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  13152587 gtgagaaagaattgttaccaacatgatcaacgctgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcatttgatgatgtt 13152488  T
Q  129 gatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    | |||||||  |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  13152487 ggtattattccaacattcatcgcaaagaggtctcggaaagggcatttacctcctaattttatttagcacactattgacaagttatgtttcatctc 13152393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 31 - 223
Target Start/End: Original strand, 27190755 - 27190947
Alignment:
Q  31 gagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttga 130  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  27190755 gagaaagaattgttacaaacaagatcaacgatgtgtggttcaatgacttgatgatatgttgcacctagcgggagatattcaagtcacttgatgatgttga 27190854  T
Q  131 tattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    ||||| | ||| |||||||||||||| ||||| || ||| |||||||||||||||||||||||| |||||||||  | |||||||||||||||    
T  27190855 tattactcgaatattcaccgcaaagatgtctcagaaaggacatttacctcctaattttatttagtacactattggcaagttatgtttcatctc 27190947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 47 - 223
Target Start/End: Complemental strand, 30791633 - 30791457
Alignment:
Q  47 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 146  Q
    ||||||||||||  ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||    
T  30791633 caacaagatcaagaatgagtggttcaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgacattgatattattcgaacattc 30791534  T
Q  147 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||| ||||||| |||||||||    
T  30791533 accgcaaagaggtctcggaaagggcatttaccacctaattttatttagcacgctattgacaggttatatttcatctc 30791457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 31 - 223
Target Start/End: Original strand, 14446817 - 14447008
Alignment:
Q  31 gagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttga 130  Q
    |||||| ||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||| || | |||||||||||||||||||||||||||||    
T  14446817 gagaaagaattgttacca-caagatcaacgatttgtggttcaatgacttgatgatatgttacaccaagagagagatattcaagtcacttgatgatgttga 14446915  T
Q  131 tattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    |||||||  ||||||||| |||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||| |||||  |||||||||    
T  14446916 tattattctaacattcactgcaaagaggtctcggaaaggacattcacctcctaattttatttagcacactattgatcggttacatttcatctc 14447008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 43 - 223
Target Start/End: Original strand, 9256385 - 9256565
Alignment:
Q  43 ttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaac 142  Q
    ||||||| | |||||| ||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  9256385 ttaccaatatgatcaatgatgtgtggtttaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataattcgaac 9256484  T
Q  143 attcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    ||||| ||||||||||||||| | | | ||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  9256485 attcatcgcaaagaggtctcgcaaatgacatttacctcctaattttatttagcacactattgacaagttatgtttcatctc 9256565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 29 - 223
Target Start/End: Original strand, 24333696 - 24333893
Alignment:
Q  29 gtgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgtt 128  Q
    |||||||| ||||||||||||||||||||||||||| || ||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||    
T  24333696 gtgagaaagaattgttaccaacaagatcaacgatgtatgattcaatgactttatgatatgttacactgagcgggagatattcaagtcacttgatgatgtt 24333795  T
Q  129 gatattatttgaac---attcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
     |||||||| ||||   ||||||| ||||||||||||||| || | ||||||||| | ||||||||||||||||||||||  ||||||||||||||||    
T  24333796 aatattattcgaacattattcaccacaaagaggtctcggaaagagaatttacctcatgattttatttagcacactattgaccggttatgtttcatctc 24333893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 47 - 223
Target Start/End: Complemental strand, 16532806 - 16532631
Alignment:
Q  47 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 146  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||| || | ||||||||||||||||||||||||||||||||||||  |||||||    
T  16532806 caacaagatcaacgatgtgtggttcaatgacttgatgatatgttataccaagtgagagatattcaagtcacttgatgatgttgatattattcaaacattc 16532707  T
Q  147 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    ||||||||||| | ||||| ||||||||||||||||||||||||||||||| |||||| | |||||| |||||||||    
T  16532706 accgcaaagagatatcggaaagggcatttacctcctaattttatttagcacgctattgct-ggttatatttcatctc 16532631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 47 - 222
Target Start/End: Original strand, 21958512 - 21958687
Alignment:
Q  47 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 146  Q
    ||||||||||||| || ||||||| |||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||     
T  21958512 caacaagatcaacaatatgtggttgaatgacttgatgatatgttacaccgagcaggagatattcgagtcacttgatgatgttgatattattcgaacatta 21958611  T
Q  147 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatct 222  Q
    ||   ||||||||| |||| |||| |||||||||||||||||||||||||| ||||||  ||||||| ||||||||    
T  21958612 actcaaaagaggtcgcggaaagggaatttacctcctaattttatttagcacgctattggcaggttatatttcatct 21958687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 29 - 223
Target Start/End: Original strand, 28846603 - 28846781
Alignment:
Q  29 gtgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgtt 128  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |   ||| ||||||||||||||||||||||||||||||||||    
T  28846603 gtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgatgt---acatcgagcgggagatattcaagtcacttgatgatgtt 28846699  T
Q  129 gatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    ||||||||| |||||||||||||||             |||||||||||||| ||||||||||||||||||| |||| || ||||||||||||||    
T  28846700 gatattattcgaacattcaccgcaa-------------agggcatttacctcataattttatttagcacacttttgacagattatgtttcatctc 28846781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 86 - 223
Target Start/End: Complemental strand, 10014571 - 10014434
Alignment:
Q  86 atgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaat 185  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||||  ||||||||||| |||||| | | ||| |||||||||||||||||||    
T  10014571 atgttacaccgagcggaagatattcatgtcacttgatgatgttgatattattcaaacattcaccggaaagagattttggaaagggcatttacctcctaat 10014472  T
Q  186 tttatttagcacactattgataggttatgtttcatctc 223  Q
    ||||||||||||| |||||| |  |||| |||||||||    
T  10014471 tttatttagcacattattgacatattatatttcatctc 10014434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 111 - 218
Target Start/End: Original strand, 32372022 - 32372129
Alignment:
Q  111 aagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggt 210  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||  | ||| |||||||||||||||||||||||||||||||||| |||||    
T  32372022 aagtcacttgatgatgttgatattattcgaacattcaccgcaaagaggtctcaaaaaggtcatttacctcctaattttatttagcacactattggtaggt 32372121  T
Q  211 tatgtttc 218  Q
    ||| ||||    
T  32372122 tatatttc 32372129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 111 - 223
Target Start/End: Original strand, 32359486 - 32359598
Alignment:
Q  111 aagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggt 210  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||||||  | | | |||||||||||||||||||||||||||||||||| ||| |    
T  32359486 aagtcacttgatgatgttgatattattcgaacattcactgcaaagaggtctcaaaaatgtcatttacctcctaattttatttagcacactattggtagat 32359585  T
Q  211 tatgtttcatctc 223  Q
    ||| |||||||||    
T  32359586 tatatttcatctc 32359598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 116 - 223
Target Start/End: Complemental strand, 40146116 - 40146009
Alignment:
Q  116 acttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgt 215  Q
    |||||||||||||||||||||| ||||||||||  ||||||||||||||| | ||||| ||||||||||||||||||||||||||||||  || ||||||    
T  40146116 acttgatgatgttgatattattcgaacattcacaacaaagaggtctcggaaatggcatctacctcctaattttatttagcacactattggcagattatgt 40146017  T
Q  216 ttcatctc 223  Q
    ||||||||    
T  40146016 ttcatctc 40146009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 111 - 223
Target Start/End: Original strand, 32342880 - 32342992
Alignment:
Q  111 aagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggt 210  Q
    ||||||||||||||||||||||||||| |||||||||| ||||| |||||||  | ||| ||||||||||||||||||||||||||||| |||| || ||    
T  32342880 aagtcacttgatgatgttgatattattcgaacattcactgcaaaaaggtctcaaaaaggtcatttacctcctaattttatttagcacaccattggtatgt 32342979  T
Q  211 tatgtttcatctc 223  Q
    ||| |||||||||    
T  32342980 tatatttcatctc 32342992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 111 - 223
Target Start/End: Original strand, 32355367 - 32355479
Alignment:
Q  111 aagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggt 210  Q
    ||||||||||||||||||||||||||| |||||||||| ||||| |||||||  | ||| ||||||||||||||||||||||||||||| |||| || ||    
T  32355367 aagtcacttgatgatgttgatattattcgaacattcactgcaaaaaggtctcaaaaaggtcatttacctcctaattttatttagcacaccattggtatgt 32355466  T
Q  211 tatgtttcatctc 223  Q
    ||| |||||||||    
T  32355467 tatatttcatctc 32355479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 64 - 223
Target Start/End: Original strand, 42446935 - 42447101
Alignment:
Q  64 tgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttg-----aacattcacc--gcaaaga 156  Q
    ||||||| ||||||||||| |||||||||| ||||||| |||||||||||||||||||||| ||| ||||||||||     ||||||||||  | ||| |    
T  42446935 tgtggttgaatgacgtgattatatgttacatcgagcggaagatattcaagtcacttgatgacgtttatattatttgaacataacattcaccgtgtaaaaa 42447034  T
Q  157 ggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    ||| ||| | |  |||||||||||||||||||||||||||||||| ||| | ||||| |||||||||    
T  42447035 ggtatcgaaaaatgcatttacctcctaattttatttagcacactaatgacaagttatatttcatctc 42447101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 69 - 223
Target Start/End: Original strand, 10467786 - 10467927
Alignment:
Q  69 ttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatag 168  Q
    ||||||||| ||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||| |||||| ||             ||||| ||    
T  10467786 ttcaatgacttgatgatatgttacatcgagcgggagataatcaagtcatttgatgatgttgatattattcgaacatgca-------------tcggaaag 10467872  T
Q  169 ggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    || ||||||||| ||||||||||||||||| |||||| | |||||||||||||||    
T  10467873 ggtatttacctcataattttatttagcacaatattgacaagttatgtttcatctc 10467927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 113 - 219
Target Start/End: Complemental strand, 34228338 - 34228232
Alignment:
Q  113 gtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggtta 212  Q
    ||||||||||||||||||||||||| ||||||| ||| ||||||||||| ||| |  ||||||||||||| |||||||||| |||| |||||| | ||||    
T  34228338 gtcacttgatgatgttgatattattcgaacatttaccacaaagaggtcttggaaattgcatttacctcctcattttatttatcacattattgacatgtta 34228239  T
Q  213 tgtttca 219  Q
    | |||||    
T  34228238 tatttca 34228232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 213
Target Start/End: Complemental strand, 2826407 - 2826315
Alignment:
Q  118 ttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttat 213  Q
    ||||| |||||||||||||| ||||||||||||||||||||| ||||   |||||||||    |||||||||||||||||||||| |||| |||||    
T  2826407 ttgataatgttgatattattcgaacattcaccgcaaagaggtatcggcatgggcattta---tctaattttatttagcacactatggatatgttat 2826315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 223
Target Start/End: Complemental strand, 24592387 - 24592336
Alignment:
Q  172 atttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  24592387 atttacctcctaattttatttagcacactattggcaggttatgtttcatctc 24592336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 205
Target Start/End: Original strand, 3435409 - 3435443
Alignment:
Q  171 catttacctcctaattttatttagcacactattga 205  Q
    |||||||||||||| ||||||||||||||||||||    
T  3435409 catttacctcctaactttatttagcacactattga 3435443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 205
Target Start/End: Complemental strand, 40470521 - 40470487
Alignment:
Q  171 catttacctcctaattttatttagcacactattga 205  Q
    ||||||||| |||||||||||||||||||||||||    
T  40470521 catttaccttctaattttatttagcacactattga 40470487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 47 - 223
Target Start/End: Complemental strand, 135029 - 134853
Alignment:
Q  47 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 146  Q
    ||||||||| ||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  135029 caacaagatgaacaatgtgtggttaaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcgaacattc 134930  T
Q  147 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  134929 accggaaagaggtctcggaaagggcatttacctcctaattttatttagcacgctattgataggttatatttcatctc 134853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 139; Significance: 7e-73; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 29 - 223
Target Start/End: Complemental strand, 23180078 - 23179885
Alignment:
Q  29 gtgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgtt 128  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||| |||||||||||| |||||||| |||||    
T  23180078 gtgagaaataattgttaccaacaagatcaacgatgtgtgtttcaataacttgatgatatgttacaccgagcgagagatattcaaggcacttgataatgtt 23179979  T
Q  129 gatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    ||||||||| ||||||||||||||||||||||| ||| |||||||||| |||||||||| ||||||||||||||||| | |||||||||||||||    
T  23179978 gatattattcgaacattcaccgcaaagaggtcttggaaagggcattta-ctcctaatttaatttagcacactattgacaagttatgtttcatctc 23179885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 47 - 223
Target Start/End: Complemental strand, 26493889 - 26493713
Alignment:
Q  47 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 146  Q
    ||||||||| ||| |||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26493889 caacaagatgaacaatgtgtggttaaatgacttgatgatacgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcgaacattc 26493790  T
Q  147 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||    
T  26493789 accgtaaagaggtctcggaaagggcatttacctcctaattttatttagcacgctattgacaggttatatttcatctc 26493713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 32 - 223
Target Start/End: Original strand, 9230386 - 9230577
Alignment:
Q  32 agaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgat 131  Q
    ||||| |||||||||||||| | ||||||||||||||||||||||| |||||||||||||||  |||||||||||| |||||||| ||||||||||||||    
T  9230386 agaaaaaattgttaccaacatggtcaacgatgtgtggttcaatgacttgatgatatgttacatagagcgggagatactcaagtcatttgatgatgttgat 9230485  T
Q  132 attatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    |||||| ||||||||| ||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||| | | |||||||||||||    
T  9230486 attattcgaacattcatcgcaaagaggtatcgaaaagggcatttacctcctaattttatttagcacactattgacaaggtatgtttcatctc 9230577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 47 - 222
Target Start/End: Complemental strand, 27387481 - 27387306
Alignment:
Q  47 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 146  Q
    ||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27387481 caacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcgaacattc 27387382  T
Q  147 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatct 222  Q
    ||   ||||||||| |||| || |||||||||||||||||||||||||||| ||||||| ||||||| ||||||||    
T  27387381 actcgaaagaggtcgcggaaagagcatttacctcctaattttatttagcacgctattgacaggttatatttcatct 27387306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 47 - 222
Target Start/End: Original strand, 19399978 - 19400153
Alignment:
Q  47 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 146  Q
    ||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  19399978 caacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccgagcgggagatattcaagtcgcttgatgatgttgatattattcgaacattc 19400077  T
Q  147 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatct 222  Q
    ||   ||||||||| |||| |||| |||||||||||||||||||||||||| ||||||  ||||||| ||||||||    
T  19400078 actcgaaagaggtcgcggaaagggtatttacctcctaattttatttagcacgctattggcaggttatatttcatct 19400153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 47 - 223
Target Start/End: Original strand, 45197644 - 45197819
Alignment:
Q  47 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 146  Q
    ||||||||||||| ||||||||||||||||| ||||||||| || || ||||| ||||||||||||||||||||| |||||||||||| || ||||||||    
T  45197644 caacaagatcaacaatgtgtggttcaatgacttgatgatatatt-catcgagcaggagatattcaagtcacttgacgatgttgatattgttcgaacattc 45197742  T
Q  147 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    ||| ||||||||||||||  ||||||||||| ||||||||||||||||||| |||||| |||||||| |||||||||    
T  45197743 accacaaagaggtctcggggagggcatttacatcctaattttatttagcaccctattggtaggttatatttcatctc 45197819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 31 - 202
Target Start/End: Original strand, 8638598 - 8638770
Alignment:
Q  31 gagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttga 130  Q
    |||||| |||||||||||||||||||||||| |||||||| ||| || ||||||||||||| ||||| |  ||||||||||||||| |||||||| | ||    
T  8638598 gagaaagaattgttaccaacaagatcaacgacgtgtggtttaattacttgatgatatgttataccgaacaagagatattcaagtcatttgatgatatcga 8638697  T
Q  131 tattatttgaacattcaccgcaaaga-ggtctcggatagggcatttacctcctaattttatttagcacactat 202  Q
    ||||||| ||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  8638698 tattattcgaacattcaacgcaaagagggtctcggaaagggcatttacctcctaattttatttagcacactat 8638770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 47 - 222
Target Start/End: Complemental strand, 38575464 - 38575289
Alignment:
Q  47 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 146  Q
    |||||| |||||| ||| |||||| || ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  38575464 caacaatatcaacaatgggtggttgaacgacttgatgatatgttacaccgagcgggagatattaaagtcacttgatgatgttgatattattcgaacattc 38575365  T
Q  147 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatct 222  Q
    ||   ||||||||| |||| ||  ||||||||||||||||||||||||||| ||||||| ||||||| ||||||||    
T  38575364 actcgaaagaggtcgcggaaagaacatttacctcctaattttatttagcacgctattgacaggttatatttcatct 38575289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 30 - 154
Target Start/End: Original strand, 43727979 - 43728103
Alignment:
Q  30 tgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttg 129  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||| | ||| |||||||||||||||||| ||||||||||||    
T  43727979 tgagaaagaattgttaccaacatgatcaacgatgtgtggttcaatgacttgatgatatgttatatcgaacgggagatattcaagtcagttgatgatgttg 43728078  T
Q  130 atattatttgaacattcaccgcaaa 154  Q
    ||||||||  |||||||| ||||||    
T  43728079 atattattcaaacattcatcgcaaa 43728103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 57 - 220
Target Start/End: Original strand, 18375416 - 18375577
Alignment:
Q  57 aacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaaga 156  Q
    ||||||||||||||||||||| ||||||||| |||||  ||||||||||||||||| ||||| ||| |||||||||||||| |||||||||  || || |    
T  18375416 aacgatgtgtggttcaatgacttgatgatatattacatggagcgggagatattcaaatcactagataatgttgatattattcgaacattca-tgcgaa-a 18375513  T
Q  157 ggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcat 220  Q
    ||||||| | ||||||||||| ||||||||  |||||||||||| ||| ||| |||||||||||    
T  18375514 ggtctcgaaaagggcatttacttcctaattcgatttagcacacttttggtagattatgtttcat 18375577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 114 - 220
Target Start/End: Original strand, 14088815 - 14088921
Alignment:
Q  114 tcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttat 213  Q
    ||||||||||||| ||||||||||  ||||| || ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| | |||||    
T  14088815 tcacttgatgatgctgatattattcaaacatccatcgcaaagaggtctcggaaaaggcatttacctcctaattttatttagcacactattgacaagttat 14088914  T
Q  214 gtttcat 220  Q
     ||||||    
T  14088915 atttcat 14088921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 114 - 220
Target Start/End: Original strand, 14398833 - 14398939
Alignment:
Q  114 tcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttat 213  Q
    ||||||||||||| ||||||||||  ||||| || ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| | |||||    
T  14398833 tcacttgatgatgctgatattattcaaacatccatcgcaaagaggtctcggaaaaggcatttacctcctaattttatttagcacactattgacaagttat 14398932  T
Q  214 gtttcat 220  Q
     ||||||    
T  14398933 atttcat 14398939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 114 - 220
Target Start/End: Complemental strand, 25491742 - 25491636
Alignment:
Q  114 tcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttat 213  Q
    |||||||||||||||||||||||| |||||||||| | |||||||||||  | | ||||||||| |||| |||||||||| ||||||||||| | |||||    
T  25491742 tcacttgatgatgttgatattattcgaacattcactgtaaagaggtctcaaaaaaggcatttacttcctgattttatttatcacactattgacatgttat 25491643  T
Q  214 gtttcat 220  Q
     ||||||    
T  25491642 atttcat 25491636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 143 - 223
Target Start/End: Original strand, 9557784 - 9557864
Alignment:
Q  143 attcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    |||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||   |||||| ||||||||||    
T  9557784 attcaccgcaaagaggtctctgaaaggggatttacctcctaattttatttagcacactattcggaggttaagtttcatctc 9557864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 23804695 - 23804623
Alignment:
Q  25 gtttgtgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccga 97  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||| || |||||| |||||||||    
T  23804695 gtttgtgagaaagaatggttaccaacaagatcaacgatgtgtggttcaatgacttgttgatatattacaccga 23804623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 223
Target Start/End: Original strand, 25024596 - 25024699
Alignment:
Q  120 gatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttca 219  Q
    |||||||||||||   || | ||||||||| |||||||||||| || ||||||||||||||||||||||||| ||||   |||||| | ||||| |||||    
T  25024596 gatgatgttgataagtttcggacattcaccacaaagaggtctcagaaagggcatttacctcctaattttattaagcatgttattgacatgttatatttca 25024695  T
Q  220 tctc 223  Q
    ||||    
T  25024696 tctc 25024699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 26782365 - 26782317
Alignment:
Q  171 catttacctcctaattttatttagcacactattgataggttatgtttca 219  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||    
T  26782365 catttacctcctaattttatttagcacactattgacaagttatgtttca 26782317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 205
Target Start/End: Complemental strand, 10868502 - 10868468
Alignment:
Q  171 catttacctcctaattttatttagcacactattga 205  Q
    |||||||||||||||||||||||||||||| ||||    
T  10868502 catttacctcctaattttatttagcacacttttga 10868468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 10224015 - 10224067
Alignment:
Q  171 catttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    ||||||||||||||||||||||| |||||||| |  || |||| |||||||||    
T  10224015 catttacctcctaattttatttaccacactatcggcagattatatttcatctc 10224067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 32 - 223
Target Start/End: Original strand, 17725 - 17916
Alignment:
Q  32 agaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgat 131  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||| |||||||||| ||||||||||    
T  17725 agaaataattgttatcaacaagatcaacgatgtgtggttcaatgacttgatgatacgttacatcgagcgggagatatttaagtcacttgctgatgttgat 17824  T
Q  132 attatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    |||||| |||||||||||||||||||||||| || ||| |||||| |||||||||||||||||||||||||||| || ||| ||||||||||    
T  17825 attattcgaacattcaccgcaaagaggtctccgaaaggacatttaactcctaattttatttagcacactattgacagattacgtttcatctc 17916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 131; Significance: 4e-68; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 29 - 223
Target Start/End: Original strand, 12539556 - 12539749
Alignment:
Q  29 gtgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgtt 128  Q
    |||||||| |||||||||||||||||||||| ||| ||||||||||||| ||||||||||||| |||||||   ||||||||||||||||||||||||||    
T  12539556 gtgagaaagaattgttaccaacaagatcaacaatgcgtggttcaatgacttgatgatatgtta-accgagcataagatattcaagtcacttgatgatgtt 12539654  T
Q  129 gatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    ||||||||| ||||||||||||||||||||||| ||| ||  ||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  12539655 gatattattcgaacattcaccgcaaagaggtcttggaaagaacatttacctcctaattttatttagcacactattgacacgttatgtttcatctc 12539749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 47 - 220
Target Start/End: Complemental strand, 19952006 - 19951833
Alignment:
Q  47 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 146  Q
    ||||||||| |||||||| |||||||||||| ||| ||||||| |||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  19952006 caacaagattaacgatgtatggttcaatgacttgacgatatgtcacactgagcgagagatattcaagtcacttgatgatgttgatattattcgaacattc 19951907  T
Q  147 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcat 220  Q
    ||||||||||||||||| | ||||||||||||| ||||||| ||||||||||||||||| ||||||| ||||||    
T  19951906 accgcaaagaggtctcgaaaagggcatttaccttctaatttaatttagcacactattgacaggttatatttcat 19951833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 51 - 223
Target Start/End: Complemental strand, 35649831 - 35649659
Alignment:
Q  51 aagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccg 150  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||| |    
T  35649831 aagatcaacgatgtgttgttcaatgacttgatgatatgttacaccgagcgggagatattcaagtcatttgatgatgttgatattattgaaacattcactg 35649732  T
Q  151 caaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    ||||||| ||||| | ||| ||||||| |||||||||||||||| ||| | |||||||||||| |||||||||    
T  35649731 caaagagatctcgaaaaggacatttacttcctaattttatttagtacatttttgataggttatatttcatctc 35649659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 47 - 204
Target Start/End: Complemental strand, 33453363 - 33453206
Alignment:
Q  47 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgtt-acaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacatt 145  Q
    ||||||||||||||||||||||| ||||||| | || ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  33453363 caacaagatcaacgatgtgtggt-caatgacttcatcatatgtttacaccgagcgggagatatttaagtcacttgatgatgttgatattattcgaacatt 33453265  T
Q  146 caccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattg 204  Q
    |||||||||||||| || || || ||||||||||||||||||||||||||| |||||||    
T  33453264 caccgcaaagaggtatcagaaagagcatttacctcctaattttatttagcagactattg 33453206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 30 - 215
Target Start/End: Complemental strand, 34317659 - 34317480
Alignment:
Q  30 tgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttg 129  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||   |||||||||||||||||| |||||||||    
T  34317659 tgagaaagaattgttaccaacaagatcaatgatgtgtggttcaatgacttgatgatatgttacaccgagtaagagatattcaagtcacttcatgatgttg 34317560  T
Q  130 atattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgt 215  Q
    ||||| ||       ||||||||||||||||||  | || |||||||||||||||||||| ||||||||||||||  |||||||||    
T  34317559 atattgtt------ctcaccgcaaagaggtctcaaaaagagcatttacctcctaattttaattagcacactattggcaggttatgt 34317480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 47 - 203
Target Start/End: Original strand, 22483549 - 22483705
Alignment:
Q  47 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 146  Q
    ||||||||| ||| |||  ||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||| ||||||||    
T  22483549 caacaagattaacaatgaatggttaaatgacttgatgatatgttacaccgagcgggagatattcaaatcacttgatgacattgatattattcgaacattc 22483648  T
Q  147 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactatt 203  Q
    ||||||||||  ||||||| |||||||||||||||||||||||| |||||| |||||    
T  22483649 accgcaaagaaatctcggaaagggcatttacctcctaattttatctagcacgctatt 22483705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 47 - 203
Target Start/End: Original strand, 34526352 - 34526508
Alignment:
Q  47 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 146  Q
    ||||||||| ||| ||| |||||| |||||  |||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||| ||||||||    
T  34526352 caacaagattaacaatgagtggttaaatgatttgatgatatgttacaccgagcgggagatattcaaatcacttgatgacattgatattattcgaacattc 34526451  T
Q  147 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactatt 203  Q
    ||||||||||  ||||||| |||||||||||||||||||||||| |||||| |||||    
T  34526452 accgcaaagaaatctcggaaagggcatttacctcctaattttatctagcacgctatt 34526508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 47 - 203
Target Start/End: Original strand, 22464670 - 22464826
Alignment:
Q  47 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 146  Q
    ||||||||| ||| ||| |||||| |||||  |||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||  |||||||    
T  22464670 caacaagattaacaatgagtggttaaatgatttgatgatatgttacaccgagcgggagatattcaaatcacttgatgacattgatattattcaaacattc 22464769  T
Q  147 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactatt 203  Q
    ||||||||||  ||||| | |||||||||||||||||||||||| |||||| |||||    
T  22464770 accgcaaagaaatctcgaaaagggcatttacctcctaattttatctagcacgctatt 22464826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 79 - 171
Target Start/End: Original strand, 13308748 - 13308840
Alignment:
Q  79 tgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggc 171  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||| |||||    
T  13308748 tgatgatatgttacaccgagcgagagatattcaagtcacttgatgatgttgatattattcgaacattcaccataaagaggtctcggaaagggc 13308840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 111 - 223
Target Start/End: Complemental strand, 26656452 - 26656340
Alignment:
Q  111 aagtcacttgatgat-gttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgatagg 209  Q
    ||||||||||| ||| |||||||||||| ||||||||||||||||||| |||  || ||| |||||||||||||||||||||| ||||||||||  ||||    
T  26656452 aagtcacttgacgattgttgatattattcgaacattcaccgcaaagagatcttaga-aggtcatttacctcctaattttatttcgcacactattagtagg 26656354  T
Q  210 ttatgtttcatctc 223  Q
    |||| |||||||||    
T  26656353 ttatatttcatctc 26656340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 120 - 219
Target Start/End: Complemental strand, 7886758 - 7886661
Alignment:
Q  120 gatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttca 219  Q
    ||||||||||||  ||||  ||||||||||||||||| || || || ||| || |||||||||||||||||||||||||||||||||| ||||| |||||    
T  7886758 gatgatgttgat--tattcaaacattcaccgcaaagaagtttcagaaaggtcacttacctcctaattttatttagcacactattgatatgttatatttca 7886661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 111 - 223
Target Start/End: Complemental strand, 18426072 - 18425956
Alignment:
Q  111 aagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaatttt----atttagcacactattgat 206  Q
    |||||||||||| |||||||||||||| |||||||||||| |||||||||||  | | |  |||||||||||||||||    ||||| |||||||||||     
T  18426072 aagtcacttgataatgttgatattattcgaacattcaccgtaaagaggtctcaaaaatgttatttacctcctaattttattaatttatcacactattgac 18425973  T
Q  207 aggttatgtttcatctc 223  Q
    | ||||| |||||||||    
T  18425972 aagttatatttcatctc 18425956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 31392485 - 31392554
Alignment:
Q  132 attatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacacta 201  Q
    |||||| ||||||| ||| ||||||||||||| | |||||||||||||| ||||||||||||||||||||    
T  31392485 attattcgaacatttacctcaaagaggtctcgaaaagggcatttacctcttaattttatttagcacacta 31392554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 86 - 223
Target Start/End: Original strand, 34907624 - 34907758
Alignment:
Q  86 atgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaat 185  Q
    |||||||||||| || |||||| ||| ||||||||||| ||||||||| |||  |||||||| || | ||| || ||| | ||||||||||||||||||     
T  34907624 atgttacaccgaacgagagatactcaggtcacttgatggtgttgatataattcaaacattcatcggagagaagtttcgaaaagggcatttacctcctaa- 34907722  T
Q  186 tttatttagcacactattgataggttatgtttcatctc 223  Q
      ||||||  ||||||||||  |||||| |||||||||    
T  34907723 --tatttaagacactattgacgggttatatttcatctc 34907758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 204
Target Start/End: Original strand, 45121334 - 45121389
Alignment:
Q  149 cgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattg 204  Q
    ||||||||||||||||| | | |||||||||||||||||||||||| |||||||||    
T  45121334 cgcaaagaggtctcggaaaagacatttacctcctaattttatttagaacactattg 45121389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 31392927 - 31392972
Alignment:
Q  178 ctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||    
T  31392927 ctcctaattttatttagcacactattgacaggttatgttacatctc 31392972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 13309709 - 13309765
Alignment:
Q  167 agggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    |||||||||||||| |||| ||||||||||||||||||| || |||| |||||||||    
T  13309709 agggcatttacctcataatattatttagcacactattgacagattatatttcatctc 13309765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 29 - 220
Target Start/End: Original strand, 3055464 - 3055655
Alignment:
Q  29 gtgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgtt 128  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  3055464 gtgagaaagaattgttaccaacatgatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcatttgatgatgtt 3055563  T
Q  129 gatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcat 220  Q
    ||||||||| ||||||||  ||||| ||||||||  | | ||||||||||||||||||||||||||||||||||||| |  |||||||||||    
T  3055564 gatattattcgaacattccgcgcaatgaggtctcataaatggcatttacctcctaattttatttagcacactattgacaatttatgtttcat 3055655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 30 - 223
Target Start/End: Original strand, 8785765 - 8785958
Alignment:
Q  30 tgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttg 129  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||| ||||| | |||||||||||||||| ||| |||||||| |||    
T  8785765 tgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgataatatattacatcaagcgggagatattcaattcagttgatgatattg 8785864  T
Q  130 atattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    |||||||| |||||||||||||||| |||||||| | ||||   ||||||||||||||||||||||| | |||||| |||||||||||||||||    
T  8785865 atattattcgaacattcaccgcaaataggtctcgaaaagggttcttacctcctaattttatttagcatattattgacaggttatgtttcatctc 8785958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 30 - 223
Target Start/End: Complemental strand, 23244762 - 23244569
Alignment:
Q  30 tgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttg 129  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||   ||||||| || ||||| ||||||||||||||||||    
T  23244762 tgagaaagaattgttaccaacaagatcaacgatgtgtcgttcaatgacttgatgatatgttatgtcgagcggaagttattctagtcacttgatgatgttg 23244663  T
Q  130 atattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    |||||||||||||||| ||||||| |||||||| || ||||||| ||||| ||||||||||||| ||||||||||| || |||| |||||||||    
T  23244662 atattatttgaacattaaccgcaacgaggtctcagaaagggcatgtacctgctaattttatttaccacactattgacagattatatttcatctc 23244569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 47 - 223
Target Start/End: Original strand, 203851 - 204026
Alignment:
Q  47 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 146  Q
    ||||||||||||| ||||||  |  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  203851 caacaagatcaacaatgtgta-taaaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcgaacattc 203949  T
Q  147 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    |||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |  |||| |||||||||    
T  203950 accggaaagaggtctcggaaaggacatttacctcctaattttatttagcacactattgacaaattatatttcatctc 204026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 51 - 191
Target Start/End: Original strand, 1280382 - 1280522
Alignment:
Q  51 aagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccg 150  Q
    ||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1280382 aagatcaacaatgtgtggttcaatgatttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcaccg 1280481  T
Q  151 caaagaggtctcggatagggcatttacctcctaattttatt 191  Q
    ||||||||||||||| | |||||||||||||||||||||||    
T  1280482 caaagaggtctcggaaaaggcatttacctcctaattttatt 1280522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 30 - 223
Target Start/End: Complemental strand, 27168987 - 27168802
Alignment:
Q  30 tgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttg 129  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| |        |||||||||||||||||||||||||||||||||||||| ||||||    
T  27168987 tgagaaataattgttacaaacaagatcaacgatgtgtggttcaataa--------tatgttacaccgagcgggagatattcaagtcacttgataatgttg 27168896  T
Q  130 atattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    |||||||| |||||||||||| || ||||||||  | ||||||||||||||||||||||||||||||||||||||   ||||||||||||||||    
T  27168895 atattattcgaacattcaccgaaatgaggtctcataaagggcatttacctcctaattttatttagcacactattggatggttatgtttcatctc 27168802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 29 - 223
Target Start/End: Original strand, 11852697 - 11852891
Alignment:
Q  29 gtgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgtt 128  Q
    |||||||| |||| ||||||||||||| || |||||||||||||||||| ||||||||||||||||||| ||||||||||| || |||||||||||||||    
T  11852697 gtgagaaagaattattaccaacaagatgaaagatgtgtggttcaatgacttgatgatatgttacaccgaacgggagatatttaactcacttgatgatgtt 11852796  T
Q  129 gatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    ||||||||| ||||||| | | |||||||||||  || || | |||||||| ||||||||||||||||||||||||| |  |||| |||||||||    
T  11852797 gatattattcgaacatttaacacaaagaggtctaagaaagagtatttaccttctaattttatttagcacactattgacaaattatctttcatctc 11852891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 47 - 203
Target Start/End: Complemental strand, 26540830 - 26540674
Alignment:
Q  47 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 146  Q
    ||||||||| ||| ||| |||||| |||||  |||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||| ||||||||    
T  26540830 caacaagattaacaatgagtggttaaatgatttgatgatatgttacaccgagcgggagatattcaaatcacttgatgacattgatattattcgaacattc 26540731  T
Q  147 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactatt 203  Q
    ||||||||||  |||| || |||||||||||||||||||||||| |||||| |||||    
T  26540730 accgcaaagaaatctcagaaagggcatttacctcctaattttatctagcacgctatt 26540674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 89 - 223
Target Start/End: Original strand, 2228957 - 2229091
Alignment:
Q  89 ttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaagagg-tctcggatagggcatttacctcctaattt 187  Q
    |||||| |||||| ||||||| |||||| |||||||||||||||||||||||||||||| |||||||||| ||| ||| |||||||||||||||||||||    
T  2228957 ttacactgagcggaagatatttaagtcatttgatgatgttgatattatttgaacattcatcgcaaagaggttctagga-agggcatttacctcctaattt 2229055  T
Q  188 tatttagcacactattgataggttatgtttcatctc 223  Q
    |||||||||| |||||| |||||||| |||||||||    
T  2229056 tatttagcacgctattggtaggttatatttcatctc 2229091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 96 - 223
Target Start/End: Complemental strand, 22713025 - 22712898
Alignment:
Q  96 gagcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagc 195  Q
    ||||||| |||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||| || || ||||||||||||||||||||||||||    
T  22713025 gagcgggggatattcatgtcacttgatgatgttgatattattcaaacattcaccgcaaagaggtctcagaaagagcatttacctcctaattttatttagc 22712926  T
Q  196 acactattgataggttatgtttcatctc 223  Q
    |||||||||  | |||||||| ||||||    
T  22712925 acactattgtcatgttatgttacatctc 22712898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 66 - 223
Target Start/End: Original strand, 22541905 - 22542062
Alignment:
Q  66 tggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcgga 165  Q
    ||||| |||||| ||||||||||||||| ||| ||| |||||||||||||||| ||||||||| |||||||| |||||||| |   ||||||||| ||||    
T  22541905 tggttgaatgacttgatgatatgttacatcgaacggaagatattcaagtcactcgatgatgttaatattattcgaacattccctcgaaagaggtcgcgga 22542004  T
Q  166 tagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
     |||||||||||||| |||||||||||||||| ||||||  ||||||| |||| ||||    
T  22542005 aagggcatttacctcataattttatttagcacgctattgtcaggttatatttcttctc 22542062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 111 - 194
Target Start/End: Complemental strand, 19519053 - 19518970
Alignment:
Q  111 aagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttag 194  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| | ||| ||| |||||||| |||||||||||||||    
T  19519053 aagtcacttgatgatgttgatattattcgaacattcaccgcaaagaggtattggaaaggtcatttaccacctaattttatttag 19518970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 211
Target Start/End: Original strand, 192060 - 192122
Alignment:
Q  149 cgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggtt 211  Q
    ||||||||||| ||||| | |  |||||||| ||||||||||||| |||||||||||||||||    
T  192060 cgcaaagaggtttcggaaaagatatttaccttctaattttatttaacacactattgataggtt 192122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 204
Target Start/End: Complemental strand, 38269442 - 38269409
Alignment:
Q  171 catttacctcctaattttatttagcacactattg 204  Q
    |||||||||||||||||||||| |||||||||||    
T  38269442 catttacctcctaattttatttggcacactattg 38269409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 28801427 - 28801467
Alignment:
Q  171 catttacctcctaattttatttagcacactattgataggtt 211  Q
    |||||| |||||||||||||||||| ||||||||| |||||    
T  28801427 catttaactcctaattttatttagctcactattgacaggtt 28801467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 47 - 222
Target Start/End: Original strand, 31989029 - 31989204
Alignment:
Q  47 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 146  Q
    ||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  31989029 caacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcgaacattc 31989128  T
Q  147 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatct 222  Q
    ||   ||||||||| |||| ||||||||||||||||||||||||||||||| | ||| | ||||||| ||||||||    
T  31989129 actcgaaagaggtcgcggaaagggcatttacctcctaattttatttagcacgccattaacaggttatatttcatct 31989204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 47 - 204
Target Start/End: Original strand, 43137127 - 43137283
Alignment:
Q  47 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 146  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  43137127 caacaagatcaacgatgtatggttcaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcgaacattc 43137226  T
Q  147 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattg 204  Q
     |||| |||||||||| || | || |||||||||||||||||||||||||||||||||    
T  43137227 gccgc-aagaggtctcagaaaaggtatttacctcctaattttatttagcacactattg 43137283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 29 - 217
Target Start/End: Original strand, 51261961 - 51262149
Alignment:
Q  29 gtgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgtt 128  Q
    |||| ||| |||||||||||||||||||||||| ||||||| ||||||  ||||||||||||||||  ||||| ||||||||||||||||||||||||||    
T  51261961 gtgaaaaagaattgttaccaacaagatcaacgaagtgtggtacaatgaattgatgatatgttacactaagcggaagatattcaagtcacttgatgatgtt 51262060  T
Q  129 gatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgttt 217  Q
    ||||||||| ||||||||| || |||||||||| | | ||  ||||||||||||||||||||||||||||||||||| |||||||||||    
T  51262061 gatattattcgaacattcatcgtaaagaggtcttgaaaagaacatttacctcctaattttatttagcacactattgacaggttatgttt 51262149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 29 - 223
Target Start/End: Complemental strand, 3857069 - 3856875
Alignment:
Q  29 gtgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgtt 128  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||| |||||| ||||||| | ||| ||||||||||||||||| |||||||||||    
T  3857069 gtgagaaataattgttaccatcaagatcaacgatgtgtggttaaatgacttgatgacatgttactcagagtgggagatattcaagtcatttgatgatgtt 3856970  T
Q  129 gatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    |||||||||  ||||||||||||||||||||||| || ||   ||||||||||||||||||||||||||| |||||  | || ||||||||||||    
T  3856969 gatattattcaaacattcaccgcaaagaggtctcagaaagaaaatttacctcctaattttatttagcacattattggcatgtaatgtttcatctc 3856875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 47 - 222
Target Start/End: Original strand, 53710398 - 53710573
Alignment:
Q  47 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 146  Q
    ||||||||||||| |||  ||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  53710398 caacaagatcaacaatggatggttgaatgacttgatgatctgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcgaacattc 53710497  T
Q  147 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatct 222  Q
    ||   ||||||||| |||| ||||||||||||||||||||||||||||||| ||||||| ||||||| ||| ||||    
T  53710498 actcgaaagaggtcacggaaagggcatttacctcctaattttatttagcacgctattgacaggttatattttatct 53710573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 30 - 185
Target Start/End: Original strand, 15667956 - 15668111
Alignment:
Q  30 tgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttg 129  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  15667956 tgagaaagaattgttaccaacaagatcaaggatgtgtggttcaataacttgatgatatgttataccgagcgggagatattcaagtcacttgatgatgttg 15668055  T
Q  130 atattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaat 185  Q
    |||||||| |||||| |||  ||||||||| ||||| | |||||||||||||||||    
T  15668056 atattattcgaacatgcacaacaaagaggtatcggaaaaggcatttacctcctaat 15668111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 47 - 222
Target Start/End: Complemental strand, 24908568 - 24908393
Alignment:
Q  47 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 146  Q
    ||||||||||||| |||||||||| |||||| ||||||||||||||||| ||| ||||||||||||||| ||||| ||||||||||||||| ||||||||    
T  24908568 caacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccaagcaggagatattcaagtcgcttgaagatgttgatattattcgaacattc 24908469  T
Q  147 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatct 222  Q
    ||   ||||||||| |||| |||| |||||||||||||||||||||||||| ||||| | ||||||| ||||||||    
T  24908468 actcgaaagaggtcgcggaaagggtatttacctcctaattttatttagcacgctattcacaggttatatttcatct 24908393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 47 - 220
Target Start/End: Complemental strand, 37382044 - 37381871
Alignment:
Q  47 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 146  Q
    |||||||||||||||||||||||| ||||||  |||||||| |||||| ||||  ||||||||||||||| ||||||||||| |||||||| ||||||||    
T  37382044 caacaagatcaacgatgtgtggttaaatgactcgatgatatattacactgagcatgagatattcaagtcatttgatgatgtttatattattcgaacattc 37381945  T
Q  147 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcat 220  Q
    || |||||||||||||||| | | ||||| ||||||||||||||| ||||| ||||||| ||||||| ||||||    
T  37381944 actgcaaagaggtctcggaaatgacatttgcctcctaattttattcagcacgctattgacaggttatatttcat 37381871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 118 - 223
Target Start/End: Complemental strand, 24988917 - 24988812
Alignment:
Q  118 ttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgttt 217  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||  || ||||||||    
T  24988917 ttgatgatgttgatattattcgaacattcaccgcaaagaggtctcggaaagggcatgtatctcctaattttatttagcacactattgccagattatgttt 24988818  T
Q  218 catctc 223  Q
    ||||||    
T  24988817 catctc 24988812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 111 - 223
Target Start/End: Complemental strand, 22934910 - 22934798
Alignment:
Q  111 aagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggt 210  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||| ||||||| ||||  ||||||||||||  |    
T  22934910 aagtcacttgatgatgttgatattattagaacattcaccgcaaagaggtctcggaaaggtcatttacctcttaattttgtttaagacactattgatatat 22934811  T
Q  211 tatgtttcatctc 223  Q
    ||| |||||||||    
T  22934810 tatatttcatctc 22934798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 66 - 137
Target Start/End: Original strand, 43585836 - 43585907
Alignment:
Q  66 tggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatt 137  Q
    ||||| |||||| |||||||||||||||||||||||||||||| ||||| |||||| |||||| ||||||||    
T  43585836 tggttgaatgacttgatgatatgttacaccgagcgggagatatccaagttacttgacgatgttaatattatt 43585907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 9743379 - 9743444
Alignment:
Q  158 gtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    |||||||| || | ||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  9743379 gtctcggagagagtatttacctcgtaattttatttagcacactattggtaggttatgtttcatctc 9743444  T

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Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 203
Target Start/End: Original strand, 38282510 - 38282563
Alignment:
Q  150 gcaaagaggtctcggatagggcatttacctcctaattttatttagcacactatt 203  Q
    |||||||||||||||| || ||||||||||| ||||||||||||||||||||||    
T  38282510 gcaaagaggtctcggaaagagcatttacctcataattttatttagcacactatt 38282563  T

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Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 51408664 - 51408609
Alignment:
Q  167 agggcatttacctcctaattttatttagcacactattgataggttatgtttcatct 222  Q
    ||||||||||||||||||||||||||||||| ||||||| | ||||| ||||||||    
T  51408664 agggcatttacctcctaattttatttagcacgctattgacatgttatatttcatct 51408609  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 205
Target Start/End: Original strand, 5135410 - 5135443
Alignment:
Q  172 atttacctcctaattttatttagcacactattga 205  Q
    ||||||||| ||||||||||||||||||||||||    
T  5135410 atttacctcataattttatttagcacactattga 5135443  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 203
Target Start/End: Original strand, 43585933 - 43585965
Alignment:
Q  171 catttacctcctaattttatttagcacactatt 203  Q
    ||||||||||||||||||||||||||| |||||    
T  43585933 catttacctcctaattttatttagcacgctatt 43585965  T

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Target: scaffold0007 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 47 - 223
Target Start/End: Original strand, 259918 - 260094
Alignment:
Q  47 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 146  Q
    ||||||||||||| ||| ||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||  ||||||||||| ||||||||    
T  259918 caacaagatcaacaatgagtggttcaatgacttgatgatatgttacatcgagcgggatatattcaagtcacttgatgacattgatattattcgaacattc 260017  T
Q  147 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    ||||||||||||||||||| | |||||||||| |||||||||||||||||| ||||||| || |||| |||||||||    
T  260018 accgcaaagaggtctcggaaatggcatttaccacctaattttatttagcacgctattgacagattatatttcatctc 260094  T

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Target: scaffold0015 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 47 - 222
Target Start/End: Complemental strand, 214336 - 214161
Alignment:
Q  47 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 146  Q
    ||||||||||||| || ||||||| |||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||     
T  214336 caacaagatcaacaatatgtggttgaatgacttgatgatatgttacaccgagcaggagatattcgagtcacttgatgatgttgatattattcgaacatta 214237  T
Q  147 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgtttcatct 222  Q
    ||   ||||||||| |||| |||| |||||||||||||||||||||||||| ||||||  ||||||| ||||||||    
T  214236 actcaaaagaggtcgcggaaagggaatttacctcctaattttatttagcacgctattggcaggttatatttcatct 214161  T

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Target: scaffold0002 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 29 - 204
Target Start/End: Complemental strand, 435548 - 435366
Alignment:
Q  29 gtgagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacgtg-----atgatatgttacaccgagcgggagatattcaagtcacttgatg 123  Q
    |||||||| |||||||||||||||||||||  |||||||| |||||||| ||     ||||||||||||||||||||| ||||||||||||||||||||     
T  435548 gtgagaaaaaattgttaccaacaagatcaataatgtgtggctcaatgacttgatgatatgatatgttacaccgagcggaagatattcaagtcacttgatt 435449  T
Q  124 atgttgatattatttgaac--attcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattg 204  Q
    |||||||||||||| ||||  ||| ||||| ||||||||||| | ||| ||||||||||||||||||||||||||||||||||    
T  435448 atgttgatattattagaacatattaaccgcgaagaggtctcgaaaaggacatttacctcctaattttatttagcacactattg 435366  T

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Target: scaffold0168 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 47 - 203
Target Start/End: Original strand, 15814 - 15970
Alignment:
Q  47 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 146  Q
    ||||||||| ||| ||| |||||| |||||  |||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||| ||||||||    
T  15814 caacaagattaacaatgagtggttaaatgatttgatgatatgttacaccgagcgggagatattcaaatcacttgatgacattgatattattcgaacattc 15913  T
Q  147 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactatt 203  Q
    ||||||||||  ||||||| |||||||||||||||||||||||| |||||| |||||    
T  15914 accgcaaagaaatctcggaaagggcatttacctcctaattttatctagcacgctatt 15970  T

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Target: scaffold0198 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 81 - 223
Target Start/End: Original strand, 1430 - 1572
Alignment:
Q  81 atgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctc 180  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||  |||||||||||||||| | ||||||| ||||    
T  1430 atgatatgttacaccgagcgggagatattcaaatcacttgatgatgttgatattattcgaacattcattgcaaagaggtctcggaaatggcatttgcctc 1529  T
Q  181 ctaattttatttagcacactattgataggttatgtttcatctc 223  Q
    |||||||||||||||| ||||| |  | | |||||||||||||    
T  1530 ctaattttatttagcatactatcggcatgctatgtttcatctc 1572  T

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Target: scaffold0012 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 47 - 203
Target Start/End: Original strand, 197105 - 197261
Alignment:
Q  47 caacaagatcaacgatgtgtggttcaatgacgtgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattatttgaacattc 146  Q
    ||||||||| ||| ||| |||||| |||||  |||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||  |||||||    
T  197105 caacaagattaacaatgagtggttaaatgaattgatgatatgttacaccgagcgggagatattcaaatcacttgatgacattgatattattcaaacattc 197204  T
Q  147 accgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactatt 203  Q
    ||||||||||  ||||| | |||||||||||||||||||||||| |||||| |||||    
T  197205 accgcaaagaaatctcgaaaagggcatttacctcctaattttatctagcacgctatt 197261  T

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Target: scaffold0726 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0726
Description:

Target: scaffold0726; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 118 - 223
Target Start/End: Original strand, 954 - 1059
Alignment:
Q  118 ttgatgatgttgatattatttgaacattcaccgcaaagaggtctcggatagggcatttacctcctaattttatttagcacactattgataggttatgttt 217  Q
    |||||||||||||||||||| |||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||  || ||||||||    
T  954 ttgatgatgttgatattattcgaacattcaccgcaaagaggtctccgaaagggcatttatctcctaattttatttagcacactattgccagattatgttt 1053  T
Q  218 catctc 223  Q
    ||||||    
T  1054 catctc 1059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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