View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20787_high_1 (Length: 741)
Name: NF20787_high_1
Description: NF20787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20787_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 223 - 726
Target Start/End: Original strand, 8538245 - 8538748
Alignment:
| Q |
223 |
gtctttaacaactaacactatcaaatcacataatgcaagaaagtgcaagtaatgataacaagggaagacacttcgagagtaagatcaatcaaagagagaa |
322 |
Q |
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| T |
8538245 |
gtctttaacaactaacactatcaaatcacataatgcaaaaaagtgcaagtaatgataacaagagaagacacttcgagagtaagatcaatcaaagagagaa |
8538344 |
T |
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| Q |
323 |
gaaacttaccatcatttggatctgtgtcgccattgataacaaaagtacagctgctactgatgatgaacatcagcatcagcatcagccatggatccaccga |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8538345 |
gaaacttaccatcatttggatctgtgtcgccattgataacaaaagtacagctgctactgatgatgaacatcagcatcagcatcagccatggatccaccga |
8538444 |
T |
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| Q |
423 |
catctttttctcactgaaacaatattttcaacnnnnnnnncttccaacccagaaagcaaaatcaatattcaatgaacccctttttgtcaaaatttgattt |
522 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8538445 |
catctttttctcactgaaacaatattttcagcaaaaaaaacttccaacccagaaagcaaaatcaatattcaatgaacctctttttgtcaaaatttgattt |
8538544 |
T |
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| Q |
523 |
ttaagaatattatataaatgggtttattcattccatttgtttatatatatgttgcctccataagagtaaagctggcaagcacgatttagctacaagaatc |
622 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8538545 |
ttaagaatattatataaatgggtttattcattccatttgtttatatatatgttgcctccataagagtaaagctggcaagcacgatttagctacaagaatc |
8538644 |
T |
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| Q |
623 |
caacgacacgtatatgttgannnnnnnnnnnnnnnnnnnctaaccttatctcactgtctaaattctgtgtgaattaacgttgttgtcatgttctttccat |
722 |
Q |
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| T |
8538645 |
caacgacacgtatatgttgattttttcttttttctttttctaaccttatctcactgtctaaattctgtgtgaattaacgttgttgtcatgttctttccat |
8538744 |
T |
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| Q |
723 |
gtta |
726 |
Q |
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|||| |
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| T |
8538745 |
gtta |
8538748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 169
Target Start/End: Original strand, 8538153 - 8538192
Alignment:
| Q |
130 |
ccaggcagaactttccacagaacctgataattaaatagtt |
169 |
Q |
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| T |
8538153 |
ccaggcagaactttccacggaacctgttaattaaatagtt |
8538192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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