View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20787_high_12 (Length: 412)
Name: NF20787_high_12
Description: NF20787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20787_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 79 - 395
Target Start/End: Complemental strand, 45591747 - 45591418
Alignment:
| Q |
79 |
aactacaccaaataaaaactatgtattgatattannnnnnn-actcatgcaaactactcgttgaaaaaatcaattatggggaaaatttgaagatggaaaa |
177 |
Q |
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| T |
45591747 |
aactacaccaaataaaaactatgtattgatattattttttttactcatgtaaactactcgttgaaaaaatcaattatggggaaaatttgaagatggaaaa |
45591648 |
T |
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| Q |
178 |
ttactcacgaatgaaagttctcttttatattaaaatcatcatgaaactaaaacgtaaaatttaaagtggtcaccttatacc-------------agacta |
264 |
Q |
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| T |
45591647 |
ttactcacgaatgaaagttctcttttatattaaaatcatcatgaaactaaaacgtaaaatttaaagtggtcaccttataccagtccaaaaaaaaagacca |
45591548 |
T |
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| Q |
265 |
aaaaaggtagataaaacatagaacataagcacggacaccnnnnnnnnctatgataaaattgtttcctacgcaaccaataaaatataaacacatgaattta |
364 |
Q |
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| T |
45591547 |
aaaaaggtagataaaacatagaacataagcactgacacc-tttttttctatgataaaattgtttcctacgcaaccaataaaatataaacacatgaattta |
45591449 |
T |
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| Q |
365 |
gaagaatatgtatatattttagtgtcatact |
395 |
Q |
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| T |
45591448 |
gaagaatatgtatatattttagtgtcatact |
45591418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 45591861 - 45591792
Alignment:
| Q |
11 |
cagagactataagacaaagaaagacaaattttagaccttaaattcaattttgctattaaaactgcagaaa |
80 |
Q |
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| T |
45591861 |
cagagactataagacaaagaaagacaaattttagaccttacattcaattttgctattaaaactgcagaaa |
45591792 |
T |
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