View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20787_high_13 (Length: 385)
Name: NF20787_high_13
Description: NF20787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20787_high_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 17 - 374
Target Start/End: Complemental strand, 28073247 - 28072889
Alignment:
| Q |
17 |
catgttattcataatttgtttgagttttcttcatttacatatttatcttatcatcatatgatataaatactaaatttttggaagagtttatnnnnnnnta |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
28073247 |
catgttattcataatttgtttgagttttcttcatttacatatttatcttatcatcatatgatataaatactaaatttttggaagagtttataaaaaaata |
28073148 |
T |
|
| Q |
117 |
gcctattgtatgtacacaaattgtttggaaacttattatttaattgacaaaaggtataagtgagttaaatcctagagacttgtagggtttcaaagtttta |
216 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
28073147 |
gcctattatatgtacacaaattgtttggaaacttattatttaattgacaaaaagtataagtgagttaaatcctagagacttgtaaggtttcaaagtttta |
28073048 |
T |
|
| Q |
217 |
atacacaaagaaca-ttacaaatatacttggatactatccgccatggatattcccacattgctagcaaaattcaaacacacatttttgtggaatataaga |
315 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28073047 |
atacacaaagaacacttacaaatatacttggatactatccgccatggatattcccacattgctagcaaaattcaaacacacatttttgtggaatataaga |
28072948 |
T |
|
| Q |
316 |
aaatttcctaccaattgtacctaaataattatcatctaaaaatacttcatctttttcat |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28072947 |
aaatttcctaccaattgtacctaaataattatcatctaaaaatacttcatctttttcat |
28072889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University