View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20787_high_18 (Length: 347)

Name: NF20787_high_18
Description: NF20787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20787_high_18
NF20787_high_18
[»] chr1 (7 HSPs)
chr1 (151-301)||(8445563-8445713)
chr1 (165-299)||(8442864-8442998)
chr1 (165-299)||(8440966-8441100)
chr1 (232-290)||(27512802-27512860)
chr1 (232-304)||(29936997-29937070)
chr1 (234-301)||(7639034-7639101)
chr1 (247-296)||(30700879-30700928)
[»] chr5 (3 HSPs)
chr5 (152-304)||(43061677-43061829)
chr5 (232-301)||(26303905-26303974)
chr5 (234-289)||(36474946-36475001)
[»] chr3 (3 HSPs)
chr3 (239-304)||(54383590-54383655)
chr3 (242-301)||(4816698-4816757)
chr3 (242-301)||(13619118-13619177)
[»] chr7 (2 HSPs)
chr7 (252-304)||(42898541-42898593)
chr7 (239-293)||(4018714-4018768)
[»] chr4 (1 HSPs)
chr4 (234-304)||(33123950-33124019)
[»] chr2 (3 HSPs)
chr2 (239-300)||(37653622-37653683)
chr2 (233-269)||(28321040-28321076)
chr2 (231-295)||(36338481-36338545)
[»] chr8 (1 HSPs)
chr8 (232-279)||(42355150-42355197)


Alignment Details
Target: chr1 (Bit Score: 111; Significance: 6e-56; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 151 - 301
Target Start/End: Original strand, 8445563 - 8445713
Alignment:
Q  151 ttagcaatttaaagaagtccaacatcgttaattttatagaagattataatatttataatagattgacaaattagaagaattgccgagtttggtaacgcaa 250  Q
    |||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||    
T  8445563 ttagcaatttaaagaagtcccacatcgttaattttatgtaagattataatatttataatagattgacaaattagaagaatcgccgagcttggtaatgcaa 8445662  T
Q  251 acttgtgacctaagtaggggcattaagatatttgaaggtctttgatgtgtg 301  Q
     |||||||||||| ||||||||||||||| || ||||||||||||||||||    
T  8445663 gcttgtgacctaaataggggcattaagatgttggaaggtctttgatgtgtg 8445713  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 165 - 299
Target Start/End: Original strand, 8442864 - 8442998
Alignment:
Q  165 aagtccaacatcgttaattttatagaagattataatatttataatagattgacaaattagaagaattgccgagtttggtaacgcaaacttgtgacctaag 264  Q
    |||||| ||||||  || ||||||||||||||||  |||||||||||||||||| | |  || |||||||||| || ||||||||| ||||| |||||||    
T  8442864 aagtcccacatcgaaaaatttatagaagattatatgatttataatagattgacacagtttaacaattgccgagctttgtaacgcaagcttgtaacctaag 8442963  T
Q  265 taggggcattaagatatttgaaggtctttgatgtg 299  Q
    || ||||| |||| | || |||||| |||||||||    
T  8442964 taagggcaataaggtgttggaaggtgtttgatgtg 8442998  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 299
Target Start/End: Original strand, 8440966 - 8441100
Alignment:
Q  165 aagtccaacatcgttaattttatagaagattataatatttataatagattgacaaattagaagaattgccgagtttggtaacgcaaacttgtgacctaag 264  Q
    |||||| ||||||  || ||||||||||||||||  ||||||| |||||||||| | |  || ||||| |||| || |||||| || ||||| |||||||    
T  8440966 aagtcccacatcgaaaaatttatagaagattatatgatttatagtagattgacacagtttaacaattgtcgagctttgtaacgtaagcttgtaacctaag 8441065  T
Q  265 taggggcattaagatatttgaaggtctttgatgtg 299  Q
    |||||||| |||| | || ||| ||||||||||||    
T  8441066 taggggcaataaggtgttggaaagtctttgatgtg 8441100  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 232 - 290
Target Start/End: Original strand, 27512802 - 27512860
Alignment:
Q  232 gccgagtttggtaacgcaaacttgtgacctaagtaggggcattaagatatttgaaggtc 290  Q
    |||||||||||||||||||||||||||  |||||||||| |||||||| || |||||||    
T  27512802 gccgagtttggtaacgcaaacttgtgatttaagtaggggtattaagatgttggaaggtc 27512860  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 304
Target Start/End: Complemental strand, 29937070 - 29936997
Alignment:
Q  232 gccgagtt-tggtaacgcaaacttgtgacctaagtaggggcattaagatatttgaaggtctttgatgtgtgaaa 304  Q
    |||||||| |||||||| |||||||||||||||||| ||  |||||||| || |||||||||||||| ||||||    
T  29937070 gccgagttatggtaacgtaaacttgtgacctaagtaaggatattaagatgttagaaggtctttgatgcgtgaaa 29936997  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 301
Target Start/End: Complemental strand, 7639101 - 7639034
Alignment:
Q  234 cgagtttggtaacgcaaacttgtgacctaagtaggggcattaagatatttgaaggtctttgatgtgtg 301  Q
    |||||||||||||||||  || ||| |||| |||||| |||||||| || ||||||||||||||||||    
T  7639101 cgagtttggtaacgcaagtttatgatctaaataggggtattaagatgttggaaggtctttgatgtgtg 7639034  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 296
Target Start/End: Complemental strand, 30700928 - 30700879
Alignment:
Q  247 gcaaacttgtgacctaagtaggggcattaagatatttgaaggtctttgat 296  Q
    |||| |||||||||||||||||||| ||||||| || ||||||| |||||    
T  30700928 gcaagcttgtgacctaagtaggggctttaagatgttggaaggtccttgat 30700879  T

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Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 152 - 304
Target Start/End: Original strand, 43061677 - 43061829
Alignment:
Q  152 tagcaatttaaagaagtccaacatcgttaattttatagaagattataatatttataatagattgacaaattagaagaattgccgagtttggtaacgcaaa 251  Q
    ||||||||||||||||||  |||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||    
T  43061677 tagcaatttaaagaagtcacacatcgttaattttatggaaaattataatatttataatagattgacaaattataagaattgtcgagtttggtaacacaaa 43061776  T
Q  252 cttgtgacctaagtaggggcattaagatatttgaaggtctttgatgtgtgaaa 304  Q
    ||| | |||||||||||||||||||||| || ||| |||||||||||||||||    
T  43061777 cttataacctaagtaggggcattaagatgttggaaagtctttgatgtgtgaaa 43061829  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 301
Target Start/End: Original strand, 26303905 - 26303974
Alignment:
Q  232 gccgagtttggtaacgcaaacttgtgacctaagtaggggcattaagatatttgaaggtctttgatgtgtg 301  Q
    |||||| || |||| |||| |||||||  ||||||||||||||||||| || | ||||||||||||||||    
T  26303905 gccgagcttagtaatgcaagcttgtgatttaagtaggggcattaagatgttgggaggtctttgatgtgtg 26303974  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 289
Target Start/End: Complemental strand, 36475001 - 36474946
Alignment:
Q  234 cgagtttggtaacgcaaacttgtgacctaagtaggggcattaagatatttgaaggt 289  Q
    ||||||||||||| ||| |||||||| |||||||| |||||||||| || ||||||    
T  36475001 cgagtttggtaacacaagcttgtgacttaagtaggcgcattaagatgttggaaggt 36474946  T

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Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 239 - 304
Target Start/End: Original strand, 54383590 - 54383655
Alignment:
Q  239 ttggtaacgcaaacttgtgacctaagtaggggcattaagatatttgaaggtctttgatgtgtgaaa 304  Q
    |||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  54383590 ttggtaacgcaagcttgtgacctaagtaggggcattaagatgttggaaggtctttgatgtgtgaaa 54383655  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 242 - 301
Target Start/End: Original strand, 4816698 - 4816757
Alignment:
Q  242 gtaacgcaaacttgtgacctaagtaggggcattaagatatttgaaggtctttgatgtgtg 301  Q
    ||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||    
T  4816698 gtaacgcaagcttgtgacctaagtaggggcattaagatgttggaaggtctttgatgtgtg 4816757  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 301
Target Start/End: Original strand, 13619118 - 13619177
Alignment:
Q  242 gtaacgcaaacttgtgacctaagtaggggcattaagatatttgaaggtctttgatgtgtg 301  Q
    ||||||||| |||||||  ||||||||||||||||||| || | ||||||||||||||||    
T  13619118 gtaacgcaagcttgtgatttaagtaggggcattaagatgttgggaggtctttgatgtgtg 13619177  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 42898541 - 42898593
Alignment:
Q  252 cttgtgacctaagtaggggcattaagatatttgaaggtctttgatgtgtgaaa 304  Q
    |||||||||||||||||| ||||||||| || |||||||||||||||||||||    
T  42898541 cttgtgacctaagtagggtcattaagatgttggaaggtctttgatgtgtgaaa 42898593  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 4018768 - 4018714
Alignment:
Q  239 ttggtaacgcaaacttgtgacctaagtaggggcattaagatatttgaaggtcttt 293  Q
    ||||||||  || ||||||||||||||| |||||||||||| || ||||||||||    
T  4018768 ttggtaacagaagcttgtgacctaagtaagggcattaagatgttagaaggtcttt 4018714  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 304
Target Start/End: Complemental strand, 33124019 - 33123950
Alignment:
Q  234 cgagtttggtaacgcaaacttgtgacctaagtaggggcattaagatatttgaaggtctttgatgtgtgaaa 304  Q
    |||||||||| |||||| ||||||||||||||| |  ||||||||| || |||||| ||||||||||||||    
T  33124019 cgagtttggtgacgcaagcttgtgacctaagtacgatcattaagatgttggaaggt-tttgatgtgtgaaa 33123950  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 300
Target Start/End: Original strand, 37653622 - 37653683
Alignment:
Q  239 ttggtaacgcaaacttgtgacctaagtaggggcattaagatatttgaaggtctttgatgtgt 300  Q
    |||||||| ||| ||||||| |||||||| | |||||||||||| |||||||||||| ||||    
T  37653622 ttggtaacacaagcttgtgatctaagtagagacattaagatattggaaggtctttgacgtgt 37653683  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 269
Target Start/End: Complemental strand, 28321076 - 28321040
Alignment:
Q  233 ccgagtttggtaacgcaaacttgtgacctaagtaggg 269  Q
    |||||||||||||||||| |||||||| |||||||||    
T  28321076 ccgagtttggtaacgcaagcttgtgacataagtaggg 28321040  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 36338481 - 36338545
Alignment:
Q  231 tgccgagtttggtaacgcaaacttgtgacctaagtaggggcattaagatatttgaaggtctttga 295  Q
    ||||||| |||||||||||| |||||||| ||| || || ||||||||| ||  |||||||||||    
T  36338481 tgccgagcttggtaacgcaagcttgtgacttaaatatggacattaagatgttgaaaggtctttga 36338545  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 279
Target Start/End: Complemental strand, 42355197 - 42355150
Alignment:
Q  232 gccgagtttggtaacgcaaacttgtgacctaagtaggggcattaagat 279  Q
    |||| |||||||||||||||||| | |||||||||| |||||||||||    
T  42355197 gccgtgtttggtaacgcaaacttataacctaagtagaggcattaagat 42355150  T

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