View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20787_high_21 (Length: 310)
Name: NF20787_high_21
Description: NF20787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20787_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 155 - 295
Target Start/End: Original strand, 46532267 - 46532407
Alignment:
| Q |
155 |
atttttgacagagtctaagttttgtttcttaggctttcaagtgattaaccaaaaataatggctcttaatgtagaaattattggttcttaaatttaattat |
254 |
Q |
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| T |
46532267 |
atttttgacagagtctaagttttgtttcttaggctttcaagtgattaaccaaaaataatggctcttaatgtagaaattattggttcttaaatttaattat |
46532366 |
T |
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| Q |
255 |
ttcaatcttctctcagcattcaaacttagaagaagtatgtg |
295 |
Q |
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| T |
46532367 |
ttcaatcttctctcagcattcaaacttagaagaagtatgtg |
46532407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 3 - 158
Target Start/End: Original strand, 46532091 - 46532246
Alignment:
| Q |
3 |
gatgtcgaagaatatgcaaaattgcaagttacaagatcgaaagtcgagtcagttcgaccactaccagctctaaaagagaaggtgaagaaagtaatgtttt |
102 |
Q |
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| T |
46532091 |
gatgtccatgaaaatgcaaaatcgcaagttacaggatcgaaagtcgagtcagttcgaccactaccagctctaaaagagaaggttaagaaagtaatgtttt |
46532190 |
T |
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| Q |
103 |
actgttgaatgaggggctttgtaggacgacttccaagtagagaaattggttcattt |
158 |
Q |
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| T |
46532191 |
actgttgaatgaggggctttgtaggacgacttccaagtagagaaattggttcattt |
46532246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 159 - 288
Target Start/End: Complemental strand, 43018737 - 43018608
Alignment:
| Q |
159 |
ttgacagagtctaagttttgtttcttaggctttcaagtgattaaccaaaaataatggctcttaatgtagaaattattggttcttaaatttaattatttca |
258 |
Q |
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| T |
43018737 |
ttgacatagtataagttttgtttcttaggctttctggtgaataaccaaagataatgcctctaaatgtagaaattattggttcttaaatataattatttca |
43018638 |
T |
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| Q |
259 |
atcttctctcagcattcaaacttagaagaa |
288 |
Q |
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| T |
43018637 |
accttccgtcggccttcaaacttagaagaa |
43018608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 114
Target Start/End: Original strand, 24599898 - 24599937
Alignment:
| Q |
75 |
aaagagaaggtgaagaaagtaatgttttactgttgaatga |
114 |
Q |
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| T |
24599898 |
aaagagaatgtgaagaatgtaatgttttactgttgaatga |
24599937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 114
Target Start/End: Complemental strand, 24614216 - 24614177
Alignment:
| Q |
75 |
aaagagaaggtgaagaaagtaatgttttactgttgaatga |
114 |
Q |
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| T |
24614216 |
aaagagaatgtgaagaatgtaatgttttactgttgaatga |
24614177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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