View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20787_high_33 (Length: 252)

Name: NF20787_high_33
Description: NF20787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20787_high_33
NF20787_high_33
[»] chr8 (8 HSPs)
chr8 (66-217)||(14091402-14091557)
chr8 (77-217)||(40307448-40307588)
chr8 (78-242)||(26087520-26087680)
chr8 (66-104)||(14126764-14126802)
chr8 (124-171)||(40524797-40524844)
chr8 (93-159)||(44997626-44997690)
chr8 (91-164)||(5338709-5338780)
chr8 (124-164)||(34664359-34664399)
[»] chr2 (5 HSPs)
chr2 (66-242)||(6680375-6680549)
chr2 (77-217)||(21638248-21638388)
chr2 (77-206)||(13768059-13768188)
chr2 (124-170)||(3410264-3410310)
chr2 (72-170)||(17408833-17408931)
[»] chr3 (2 HSPs)
chr3 (13-137)||(35987667-35987790)
chr3 (87-153)||(8627622-8627686)
[»] chr6 (4 HSPs)
chr6 (67-242)||(30740483-30740662)
chr6 (72-168)||(13677713-13677808)
chr6 (91-164)||(3147628-3147699)
chr6 (23-56)||(13677825-13677858)
[»] chr7 (8 HSPs)
chr7 (67-114)||(20217356-20217403)
chr7 (72-225)||(14760760-14760913)
chr7 (93-164)||(14964312-14964381)
chr7 (93-164)||(15393784-15393853)
chr7 (91-164)||(30713884-30713955)
chr7 (91-159)||(20221920-20221986)
chr7 (91-151)||(31601593-31601651)
chr7 (124-164)||(17275984-17276024)
[»] chr4 (4 HSPs)
chr4 (84-242)||(5999881-6000036)
chr4 (93-159)||(36240662-36240726)
chr4 (91-164)||(26936978-26937049)
chr4 (124-164)||(43704365-43704405)
[»] scaffold0695 (1 HSPs)
scaffold0695 (66-104)||(3827-3865)
[»] scaffold0009 (1 HSPs)
scaffold0009 (91-164)||(234359-234430)
[»] chr1 (3 HSPs)
chr1 (91-164)||(43631937-43632008)
chr1 (124-164)||(35064142-35064182)
chr1 (124-164)||(42099608-42099648)
[»] chr5 (2 HSPs)
chr5 (124-164)||(6657721-6657761)
chr5 (124-164)||(38363917-38363957)


Alignment Details
Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 66 - 217
Target Start/End: Original strand, 14091402 - 14091557
Alignment:
Q  66 cggtacaattaacttgcatgcatagagaaatcgaactaaccttccatttaatgtttatcaagggttgaaatgcggtccttttgagcaagaaaacgccaat 165  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||| |||||    
T  14091402 cggtgcaattaacttgcatgcgtagagaaatcgaactaaccttccatttgatgtttatcaagggtttaaatgcggtcattttgagcaagaaaacaccaat 14091501  T
Q  166 tttagttggatttttgtagttcg----taatttgggataagagggggagagagaga 217  Q
    ||| ||||||||||||||| |||     ||||||||||||||| | ||||||||||    
T  14091502 tttggttggatttttgtagctcgatcagaatttgggataagagagagagagagaga 14091557  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 217
Target Start/End: Original strand, 40307448 - 40307588
Alignment:
Q  77 acttgcatgcatagagaaatcgaactaaccttccatttaatgtttatcaagggttgaaatgcggtccttttgagcaagaaaacgccaattttagttggat 176  Q
    ||||||||||||| | |||| ||||||||||||||| | |||||| |||| | |||||||| ||| | |||||||||||   | || ||||| |||||||    
T  40307448 acttgcatgcatacataaattgaactaaccttccatgtgatgtttgtcaatgattgaaatgtggtgcgtttgagcaagatttctccgattttggttggat 40307547  T
Q  177 ttttgtagttcgtaatttgggataagagggggagagagaga 217  Q
    ||||| |||||| | |||||||| |||||| | ||||||||    
T  40307548 ttttgcagttcggattttgggattagagggagggagagaga 40307588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 242
Target Start/End: Original strand, 26087520 - 26087680
Alignment:
Q  78 cttgcatgcatagagaaatcgaactaaccttccatttaatgtttatcaagggttgaaatgcggtccttttgagcaagaaaacgccaattttagttggatt 177  Q
    |||||||| |||||||||||||||||| ||| ||| | || || | ||| | ||||||||| |||  |||||||||||   |||||||||| ||||||||    
T  26087520 cttgcatgaatagagaaatcgaactaagctttcatgtgatcttcaccaacgattgaaatgcagtctgtttgagcaagatttcgccaattttggttggatt 26087619  T
Q  178 tt--tgtagttcgtaatttgggataagagggggagagagagaaagaaagtaaaaagtgaaactgtaa 242  Q
    ||  ||||||| | | |||||||| |||||      |||||| || |||||||||||||||||||||    
T  26087620 ttgatgtagtttggattttgggattagagg------gagagagagtaagtaaaaagtgaaactgtaa 26087680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 14126764 - 14126802
Alignment:
Q  66 cggtacaattaacttgcatgcatagagaaatcgaactaa 104  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  14126764 cggtgcaattaacttgcatgcatagagaaatcgaactaa 14126802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 171
Target Start/End: Original strand, 40524797 - 40524844
Alignment:
Q  124 caagggttgaaatgcggtccttttgagcaagaaaacgccaattttagt 171  Q
    |||||||||||||||||| ||||||||||| ||||| |||| ||||||    
T  40524797 caagggttgaaatgcggtgcttttgagcaacaaaactccaaatttagt 40524844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 159
Target Start/End: Original strand, 44997626 - 44997690
Alignment:
Q  93 aaatcgaactaaccttccatttaatgtttatcaagggttgaaatgcggtccttttgagcaagaaaac 159  Q
    |||||||||| |||||||||   ||||||  |||||||||||||||||| ||||||||||| |||||    
T  44997626 aaatcgaacttaccttccatg--atgtttgacaagggttgaaatgcggtgcttttgagcaacaaaac 44997690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 164
Target Start/End: Complemental strand, 5338780 - 5338709
Alignment:
Q  91 agaaatcgaactaaccttccatttaatgtttatcaagggttgaaatgcggtccttttgagcaagaaaacgccaa 164  Q
    |||||||||||| |||||||||   ||||||  ||||||||||||| |||| ||||||||||| ||||| ||||    
T  5338780 agaaatcgaacttaccttccatg--atgtttgacaagggttgaaatacggtgcttttgagcaacaaaactccaa 5338709  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 34664359 - 34664399
Alignment:
Q  124 caagggttgaaatgcggtccttttgagcaagaaaacgccaa 164  Q
    |||||||||||||||||| ||||||||||| ||||| ||||    
T  34664359 caagggttgaaatgcggtgcttttgagcaacaaaactccaa 34664399  T

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Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 66 - 242
Target Start/End: Original strand, 6680375 - 6680549
Alignment:
Q  66 cggtacaattaacttgcatgcatagagaaatcgaactaaccttccatttaatgtttatcaagggttgaaatgcggtccttttgagcaagaaaacgccaat 165  Q
    |||||||| | |||||||||||||||||||||||| |||||||| || | ||||||||||||||||||||||| |||| |||||||||||  || |||||    
T  6680375 cggtacaaattacttgcatgcatagagaaatcgaattaaccttctatgtgatgtttatcaagggttgaaatgcagtccgtttgagcaagattacaccaat 6680474  T
Q  166 tttagttggatttttgtagttcgtaatttgggataagagggggagagagagaaagaaagtaaaaagtgaaactgtaa 242  Q
    ||| ||||||||||||||||||| | |||||||| |||  ||||||||| || || |||||||||||||||||||||    
T  6680475 tttggttggatttttgtagttcggattttgggattaga--gggagagagggagagtaagtaaaaagtgaaactgtaa 6680549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 77 - 217
Target Start/End: Complemental strand, 21638388 - 21638248
Alignment:
Q  77 acttgcatgcatagagaaatcgaactaaccttccatttaatgtttatcaagggttgaaatgcggtccttttgagcaagaaaacgccaattttagttggat 176  Q
    ||||||||||||| |||||| ||||||| ||||||| | |||||| |||||| |||||||||||||| ||||||||| |   | || ||||| |||||||    
T  21638388 acttgcatgcatacagaaattgaactaatcttccatgtgatgtttgtcaaggattgaaatgcggtccgtttgagcaaaatttcaccgattttggttggat 21638289  T
Q  177 ttttgtagttcgtaatttgggataagagggggagagagaga 217  Q
    ||||| |||||| | | |||||| |||||| ||||||||||    
T  21638288 ttttgcagttcggattctgggattagagggagagagagaga 21638248  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 206
Target Start/End: Complemental strand, 13768188 - 13768059
Alignment:
Q  77 acttgcatgcatagagaaatcgaactaaccttccatttaatgtttatcaagggttgaaatgcggtccttttgagcaagaaaacgccaattttagttggat 176  Q
    ||||||||||||| |||||| ||||||||||||||| | |||||| |||||| |||||||||||||| |||||||| ||   | || ||||| | | |||    
T  13768188 acttgcatgcatacagaaattgaactaaccttccatgtgatgtttgtcaaggattgaaatgcggtccgtttgagcatgatttcaccgattttggctcgat 13768089  T
Q  177 ttttgtagttcgtaatttgggataagaggg 206  Q
    ||||| |||||| | |||||||| ||||||    
T  13768088 ttttgcagttcggattttgggattagaggg 13768059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 170
Target Start/End: Original strand, 3410264 - 3410310
Alignment:
Q  124 caagggttgaaatgcggtccttttgagcaagaaaacgccaattttag 170  Q
    |||||||||||||||||| ||||||||||| ||||| |||| |||||    
T  3410264 caagggttgaaatgcggtgcttttgagcaacaaaactccaaatttag 3410310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 170
Target Start/End: Complemental strand, 17408931 - 17408833
Alignment:
Q  72 aattaacttgcatgcatagagaaatcgaactaaccttccatttaatgtttatcaagggttgaaatgcggtccttttgagcaagaaaacgccaattttag 170  Q
    |||||||||||| |||||  ||  |||||| ||||||| |||  ||||||   |||| ||||||||||||  |||||||||||||||| |||| |||||    
T  17408931 aattaacttgcaagcataaggatttcgaaccaaccttcaattggatgtttgataaggcttgaaatgcggtgattttgagcaagaaaactccaaatttag 17408833  T

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Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 13 - 137
Target Start/End: Complemental strand, 35987790 - 35987667
Alignment:
Q  13 aatattgtttggaaaacgaaatatggattgcttcagtgcagaaggnnnnnnnncggtacaattaacttgcatgcatagagaaatcgaactaaccttccat 112  Q
    |||||||| |||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||    
T  35987790 aatattgtctggaaaacgaaatatggattgcttcagtgcagaag-aaaaaaaacggtacaattaacttgcatgcatagagaaatcgaactaaccttccat 35987692  T
Q  113 ttaatgtttatcaagggttgaaatg 137  Q
    ||||||||||||||||| |||||||    
T  35987691 ttaatgtttatcaagggctgaaatg 35987667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 8627622 - 8627686
Alignment:
Q  87 atagagaaatcgaactaaccttccatttaatgtttatcaagggttgaaatgcggtccttttgagcaa 153  Q
    |||||||||||||||| |||||||||   ||||||  |||||||||||||||||| |||||||||||    
T  8627622 atagagaaatcgaacttaccttccatg--atgtttgacaagggttgaaatgcggtgcttttgagcaa 8627686  T

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Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 67 - 242
Target Start/End: Complemental strand, 30740662 - 30740483
Alignment:
Q  67 ggtacaattaacttgcatgcatagagaaatcgaactaaccttccatttaatgtttatcaagggttgaaatgcggtccttttgagcaagaaaacgccaatt 166  Q
    ||||||| | ||||||||||||||||||||  |||||||||||||| | ||||||| ||| | ||||||||| |||| |||||||||||   | ||||||    
T  30740662 ggtacaaattacttgcatgcatagagaaatgaaactaaccttccatgtgatgtttaccaacgattgaaatgcagtccatttgagcaagatttcaccaatt 30740563  T
Q  167 ttagttggatttttgtagttcgtaatttgggataagagg--gggagaga--gagaaagaaagtaaaaagtgaaactgtaa 242  Q
    || ||||||||||||||||||  |  ||| ||| |||||  ||||||||  || | ||||||||||||||||||||||||    
T  30740562 ttggttggatttttgtagttcagatcttgagattagagggagggagagatggatagagaaagtaaaaagtgaaactgtaa 30740483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 72 - 168
Target Start/End: Complemental strand, 13677808 - 13677713
Alignment:
Q  72 aattaacttgcatgcatagagaaatcgaactaaccttccatttaatgtttatcaagggttgaaatgcggtccttttgagcaagaaaacgccaatttt 168  Q
    ||||||||||||||||| || ||||| |||| ||||||||||| || ||| |||||||||||||||||||||||||||| ||  |||| ||||||||    
T  13677808 aattaacttgcatgcatggacaaatc-aacttaccttccatttgatttttgtcaagggttgaaatgcggtccttttgagtaaataaactccaatttt 13677713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 164
Target Start/End: Original strand, 3147628 - 3147699
Alignment:
Q  91 agaaatcgaactaaccttccatttaatgtttatcaagggttgaaatgcggtccttttgagcaagaaaacgccaa 164  Q
    |||||||||||| |||||||||   ||||||  |||||||||||||||||| ||||||||||| ||||| ||||    
T  3147628 agaaatcgaacttaccttccatg--atgtttgacaagggttgaaatgcggtgcttttgagcaacaaaactccaa 3147699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 13677858 - 13677825
Alignment:
Q  23 ggaaaacgaaatatggattgcttcagtgcagaag 56  Q
    |||||||||||| |||||||||||||||||||||    
T  13677858 ggaaaacgaaatctggattgcttcagtgcagaag 13677825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 114
Target Start/End: Original strand, 20217356 - 20217403
Alignment:
Q  67 ggtacaattaacttgcatgcatagagaaatcgaactaaccttccattt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  20217356 ggtacaattaacttgcatgcatagagaaatcgaactaaccttccattt 20217403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 225
Target Start/End: Complemental strand, 14760913 - 14760760
Alignment:
Q  72 aattaacttgcatgcatagagaaatcgaactaaccttccatttaatgtttatcaagggttgaaatgcggtccttttgagcaagaaaacgccaattttagt 171  Q
    ||||||||||||||||||  ||  |||||||||| ||| |||| ||||||   |||| ||||||||||||  |||| ||||||||||| |||| ||| |     
T  14760913 aattaacttgcatgcataaggatttcgaactaactttcaatttgatgtttgataaggcttgaaatgcggtgattttaagcaagaaaactccaaatttgga 14760814  T
Q  172 tggatttttgtagttcgtaatttgggataagagggggagagagagaaagaaagt 225  Q
      ||||  || | |||| | ||||||||||| | | |||||||||| |||||||    
T  14760813 ctgattcgtgcaattcggattttgggataagggagagagagagagagagaaagt 14760760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 164
Target Start/End: Complemental strand, 14964381 - 14964312
Alignment:
Q  93 aaatcgaactaaccttccatttaatgtttatcaagggttgaaatgcggtccttttgagcaagaaaacgccaa 164  Q
    |||||||||| |||||||||   ||||||  |||||||||||||||||| ||||||||||| ||||| ||||    
T  14964381 aaatcgaacttaccttccatg--atgttttacaagggttgaaatgcggtgcttttgagcaacaaaactccaa 14964312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 164
Target Start/End: Complemental strand, 15393853 - 15393784
Alignment:
Q  93 aaatcgaactaaccttccatttaatgtttatcaagggttgaaatgcggtccttttgagcaagaaaacgccaa 164  Q
    |||||||||| |||||||||   ||||||  |||||||||||||||||| ||||||||||| ||||| ||||    
T  15393853 aaatcgaacttaccttccatg--atgttttacaagggttgaaatgcggtgcttttgagcaacaaaactccaa 15393784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 164
Target Start/End: Original strand, 30713884 - 30713955
Alignment:
Q  91 agaaatcgaactaaccttccatttaatgtttatcaagggttgaaatgcggtccttttgagcaagaaaacgccaa 164  Q
    |||||||||||| |||||| ||   ||||||  |||||||||||||||||| ||||||||||| ||||| ||||    
T  30713884 agaaatcgaacttaccttctatg--atgtttgacaagggttgaaatgcggtgcttttgagcaacaaaactccaa 30713955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 20221920 - 20221986
Alignment:
Q  91 agaaatcgaactaaccttccatttaatgtttatcaagggttgaaatgcggtccttttgagcaagaaaac 159  Q
    |||||||||||| |||||||||   ||||||  |||||||||||||||||  ||||||||||| |||||    
T  20221920 agaaatcgaacttaccttccatg--atgtttgacaagggttgaaatgcggcgcttttgagcaacaaaac 20221986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 31601651 - 31601593
Alignment:
Q  91 agaaatcgaactaaccttccatttaatgtttatcaagggttgaaatgcggtccttttgagc 151  Q
    |||||||||||| |||||||||   ||||||  |||||||||||||||||| |||||||||    
T  31601651 agaaatcgaacttaccttccatg--atgtttgacaagggttgaaatgcggtgcttttgagc 31601593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 17275984 - 17276024
Alignment:
Q  124 caagggttgaaatgcggtccttttgagcaagaaaacgccaa 164  Q
    |||||||||||||||||| ||||||||||| ||||| ||||    
T  17275984 caagggttgaaatgcggtgcttttgagcaacaaaactccaa 17276024  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 84 - 242
Target Start/End: Complemental strand, 6000036 - 5999881
Alignment:
Q  84 tgcatagagaaatcgaactaacct-tccatttaatgtttatcaagggttgaaatgcggtccttttgagcaagaaaacgccaattttagttggatttttgt 182  Q
    |||||| ||||||| || |||||  ||||| | |||||| |||||| |||||||||||||| |||||||||||   | || ||||| ||||||||||||     
T  6000036 tgcatacagaaatcaaaataacccctccatgtgatgtttgtcaaggattgaaatgcggtccgtttgagcaagatttcaccgattttggttggatttttgc 5999937  T
Q  183 agttcgtaatttgggataagagggggagagagagaaagaaagtaaaaagtgaaactgtaa 242  Q
    |||||| | |||||||| | |||     ||||||| || |||||||||||||||| ||||    
T  5999936 agttcggattttgggattaaagg----aagagagagagtaagtaaaaagtgaaacggtaa 5999881  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 159
Target Start/End: Complemental strand, 36240726 - 36240662
Alignment:
Q  93 aaatcgaactaaccttccatttaatgtttatcaagggttgaaatgcggtccttttgagcaagaaaac 159  Q
    |||||||||| |||||||||   ||||||  |||||||||||||||||| ||||||||||| |||||    
T  36240726 aaatcgaacttaccttccatg--atgtttgacaagggttgaaatgcggtgcttttgagcaacaaaac 36240662  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 164
Target Start/End: Complemental strand, 26937049 - 26936978
Alignment:
Q  91 agaaatcgaactaaccttccatttaatgtttatcaagggttgaaatgcggtccttttgagcaagaaaacgccaa 164  Q
    |||||||||||| |||||||||  |||||||   ||||||||||||||||| ||||||| ||| ||||| ||||    
T  26937049 agaaatcgaacttaccttccat--aatgtttgaaaagggttgaaatgcggtgcttttgatcaacaaaactccaa 26936978  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 43704365 - 43704405
Alignment:
Q  124 caagggttgaaatgcggtccttttgagcaagaaaacgccaa 164  Q
    |||||||||||||||||| ||||||||||| ||||| ||||    
T  43704365 caagggttgaaatgcggtgcttttgagcaacaaaactccaa 43704405  T

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Target: scaffold0695 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0695
Description:

Target: scaffold0695; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 3865 - 3827
Alignment:
Q  66 cggtacaattaacttgcatgcatagagaaatcgaactaa 104  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  3865 cggtgcaattaacttgcatgcatagagaaatcgaactaa 3827  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 164
Target Start/End: Complemental strand, 234430 - 234359
Alignment:
Q  91 agaaatcgaactaaccttccatttaatgtttatcaagggttgaaatgcggtccttttgagcaagaaaacgccaa 164  Q
    |||||||||||| |||||||||   ||||||  | |||||||||||||||| ||||||||||| ||||| ||||    
T  234430 agaaatcgaacttaccttccatg--atgtttgaccagggttgaaatgcggtgcttttgagcaacaaaactccaa 234359  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 164
Target Start/End: Original strand, 43631937 - 43632008
Alignment:
Q  91 agaaatcgaactaaccttccatttaatgtttatcaagggttgaaatgcggtccttttgagcaagaaaacgccaa 164  Q
    ||||||| |||| |||||||||   ||||||  |||||||||||||||||| ||||||||||| ||||| ||||    
T  43631937 agaaatcaaacttaccttccatg--atgtttgacaagggttgaaatgcggtgcttttgagcaacaaaactccaa 43632008  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 35064182 - 35064142
Alignment:
Q  124 caagggttgaaatgcggtccttttgagcaagaaaacgccaa 164  Q
    |||||||||||||||||| ||||||||||| ||||| ||||    
T  35064182 caagggttgaaatgcggtgcttttgagcaacaaaactccaa 35064142  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 42099608 - 42099648
Alignment:
Q  124 caagggttgaaatgcggtccttttgagcaagaaaacgccaa 164  Q
    |||||||||||||||||| ||||||||||| ||||| ||||    
T  42099608 caagggttgaaatgcggtgcttttgagcaacaaaactccaa 42099648  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 6657761 - 6657721
Alignment:
Q  124 caagggttgaaatgcggtccttttgagcaagaaaacgccaa 164  Q
    |||||||||||||||||| ||||||||||| ||||| ||||    
T  6657761 caagggttgaaatgcggtgcttttgagcaacaaaactccaa 6657721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 38363957 - 38363917
Alignment:
Q  124 caagggttgaaatgcggtccttttgagcaagaaaacgccaa 164  Q
    |||||||||||||||||| ||||||||||| ||||| ||||    
T  38363957 caagggttgaaatgcggtgcttttgagcaacaaaactccaa 38363917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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