View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20787_high_36 (Length: 236)
Name: NF20787_high_36
Description: NF20787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20787_high_36 |
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| [»] scaffold0141 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 8351230 - 8351015
Alignment:
| Q |
7 |
ccccgtttacttcacttttatattatttaataaatctggcactag-catagtcacaatagacaaaaagtcccacatcgaaaactttcaacaatagagagt |
105 |
Q |
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| T |
8351230 |
ccccgttcacttcacttttatattatttaataaatctggtaataggcatagtcacaatagacaaaaagtcccacatcgaaaactttcaacaatagagagt |
8351131 |
T |
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| Q |
106 |
gtaagttgcctataaaaacagcgcatgacatcgttgtagtgtatttcttctctaatgagttgataggcgaataagaaacttatcagcaatcattcttggg |
205 |
Q |
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| T |
8351130 |
gtaagttgcctataaaaacagcgcatgatatcgttgtagtgtatttcttctctaatgagttgataggcgaatgagaaacttatcagcaatcattcttgtg |
8351031 |
T |
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| Q |
206 |
gtagatatgaaatttg |
221 |
Q |
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| T |
8351030 |
gtagatatgaaatttg |
8351015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 29 - 172
Target Start/End: Complemental strand, 8412493 - 8412344
Alignment:
| Q |
29 |
ttatttaataaatctggcactagcatagtcacaa--------tagacaaaaagtcccacatcgaaaactttcaacaatagagagtgtaagttgcctataa |
120 |
Q |
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| T |
8412493 |
ttatttaataaatctcgcaatagcatagtcacaaactcacagtaaacaaaaagtcccacatcgaaaactttcaacaatagagagtgtaagttgcctataa |
8412394 |
T |
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| Q |
121 |
aaacagcgcatgacatcgttgtagtgtatttcttctctaatgagttgatagg |
172 |
Q |
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| T |
8412393 |
aagcaacgcat-atatcgttgtagtgtattac-tctctaatgagatgatagg |
8412344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 8451809 - 8451736
Alignment:
| Q |
31 |
atttaataaatctggcactagcatagtcacaatagacaaaaagtcccacatcgaaaactttcaacaatagagag |
104 |
Q |
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| T |
8451809 |
atttaataaatctggcaatagcatactcacagtagacaaaaagtcccacatcaaaaactttcaataatagagag |
8451736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 136
Target Start/End: Original strand, 8479328 - 8479415
Alignment:
| Q |
49 |
tagcatagtcacaatagacaaaaagtcccacatcgaaaactttcaacaatagagagtgtaagttgcctataaaaacagcgcatgacat |
136 |
Q |
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| T |
8479328 |
tagcatattcacaatagacaaaaagtcccacttcgaacactttgtacaatataaagagcaggtttcctataaaagcagcgtatgacat |
8479415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 137
Target Start/End: Complemental strand, 8358903 - 8358837
Alignment:
| Q |
70 |
aaagtcccacatcgaaaactttcaacaatagagagtgtaagttgcctataaaaacagcgcatgacatc |
137 |
Q |
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| T |
8358903 |
aaagtcccacatcgaaaa-tttctacaatataaagagtaagttggctataaaagcagcgcatggcatc |
8358837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 8426866 - 8426785
Alignment:
| Q |
52 |
catagtcacaatagacaaaaagtcccacatcgaaaactttcaacaatagagagtgtaagttgcctataaaaacagcgcatgaca |
135 |
Q |
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| T |
8426866 |
catagtcacaatagatacaaagccccacatcgaaaactttttaaattataga--gtaagtttcctattaaagcagcgcatgaca |
8426785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 10101 - 10137
Alignment:
| Q |
146 |
gtatttcttctctaatgagttgataggcgaataagaa |
182 |
Q |
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| T |
10101 |
gtattacttctctaatgagttgataggcgaattagaa |
10137 |
T |
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